Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001830

Physical Location & Seq

Genomic Coordinates Forward (+)

21207787 .. 21210477

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18250.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGAATATTTCAGATTCTTTGAAAGGTAAAAAACGCCCGCGAGAGACAGACACTGAAGCCCCAACCGGCGATTTCGATCAGATTCTGTCACTAGAGGAAAATCTTACATTCAGCGACACGTTGGTGGCGCTTCGGATAATGCGAGCTCAGTTTCCAAACAACGAAAAGGTAACAGTTCAGCCTTTCATTTTGCGGTCACAGCTGTATAGCAGTGTGGAGGATCGAACACAAGTGGACCGGGATCTAGAGACTCTAAAAAGAGAGAAAGTGCTACGGGTTTTTAAATTAAATACTGGACAAGACGATCATGCAATAATGTTTGTGGATGACTATTTTCGCCAGATGGAAAAAGTTGTGAAAAGATTTGAAGAAAAGGACGAAGATATTGTTGAAGTTTTTAAGTGGTTTAAATCACACGTTATTGATTGCAAGCTCGAACCCAGTATTGGACATCAAGATCTTTGTACATTATTATCTGGTGGAGGAAAGGTGAAGGATGAACACATCTCCCTTTTGATCAATTCTGGCCTTCTGACTCGGCAACTTATTGATCCAAACGTTTACTGGTTCGCAATTCCAAATATTGGTTCAGTACTAAAAGGACTCTCTCAGGGAAGAAAGGAAGTTCTCTCTCTTCTAAACCGGAGGAGATACAAAGAAATGATGATGGCCCCTTTAGAGAAGAAGGCTCTTCGATTTTCTCTGCTTGATATGAGATTTCACCTCCGTGATCTGATTGGCTCAGGTCATCTCAAAACTTCCAAGACACCGACAGGCTTAGTTGTTCGAGTCTCAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stk19

Protein Analysis

269

Amino Acids

30.88

Weight (kDa)

8.92

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20495 AT2G20495 AT2G20495 AT2G20495 AT2G20495
fragaria_vesca	FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270
malus_domestica	MD05G1195200.v1.1
prunus_persica	Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1
pyrus_communis	pycom05g18250
rosa_chinensis	RchiOBHm_Chr6g0287851
rosa_laevigata	RLG00000012462
rosa_multiflora	Rmu_sc0003877.1_g000003 Rmu_sc0007724.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180720 Rroxscaffold_7G00180830
rosa_rugosa	Rorug06G0192600 Rorug06G0192700 Rorug06G0192800
rosa_samantha	Rh6AG302100 Rh6BG308200 Rh6CG301500 Rh6CG315900 Rh6DG300700
rosa_wichuraiana	Rw6G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	587
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	41, 196
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	3 cut(s)	231, 252, 548
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	469, 597
AfiI	CCNNNNNNNGG	2 cut(s)	449, 587
AflIII	ACRYGT	2 cut(s)	120, 418
AgsI	TTSAA	3 cut(s)	25, 371, 395
AjuI	GAANNNNNNNTTGG	4 cut(s)	432, 464, 574, 606
AleI	CACNNNNGTG	2 cut(s)	125, 729
AluBI	AGCT	3 cut(s)	149, 205, 436
AluI	AGCT	3 cut(s)	149, 205, 436
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	3 cut(s)	41, 245, 799
AlwI	GGATC	3 cut(s)	231, 252, 548
AlwNI	CAGNNNCTG	2 cut(s)	56, 88
AoxI	GGCC	2 cut(s)	529, 672
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	238, 673
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	505, 716
AvaII	GGWCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BccI	CCATC	2 cut(s)	340, 664
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	41, 245, 799
BfaI	CTAG	2 cut(s)	95, 248
BfoI	RGCGCY	1 cut(s)	134
BglII	AGATCT	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	597
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	238, 673
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	645
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 587
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	301, 444, 572
Bse8I	GATNNNNATC	1 cut(s)	78
BseGI	GGATG	2 cut(s)	334, 505
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	449, 587
BseMII	CTCAG	3 cut(s)	164, 626, 759
BseNI	ACTGG	3 cut(s)	301, 444, 572
BseRI	GAGGAG	1 cut(s)	664
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	531, 674
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	69, 241, 646
BslI	CCNNNNNNNGG	2 cut(s)	449, 587
BsmAI	GTCTC	3 cut(s)	41, 245, 799
BsnI	GGCC	2 cut(s)	531, 674
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	467
Bsp143I	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
BspACI	CCGC	2 cut(s)	41, 196
BspANI	GGCC	2 cut(s)	531, 674
BspCNI	CTCAG	3 cut(s)	163, 625, 758
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	675
BspPI	GGATC	3 cut(s)	231, 252, 548
BspQI	GCTCTTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	301, 444, 572
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	642, 699
BstAUI	TGTACA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	41, 147, 434
BstDEI	CTNAG	4 cut(s)	150, 612, 745, 781
BstF5I	GGATG	2 cut(s)	334, 505
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	8 cut(s)	82, 226, 247, 310, 463, 522, 556, 736
BstMAI	GTCTC	3 cut(s)	41, 245, 799
BstMBI	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	244, 460
BstYI	RGATCY	2 cut(s)	244, 460
BsuRI	GGCC	2 cut(s)	531, 674
BtsCI	GGATG	2 cut(s)	334, 505
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	54, 220
Cac8I	GCNNGC	3 cut(s)	41, 147, 434
CaiI	CAGNNNCTG	2 cut(s)	56, 88
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	238, 673
Csp6I	GTAC	2 cut(s)	468, 596
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	2 cut(s)	468, 596
DdeI	CTNAG	4 cut(s)	150, 612, 745, 781
DpnI	GATC	8 cut(s)	81, 225, 246, 309, 462, 521, 555, 735
DpnII	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
DraI	TTTAAA	2 cut(s)	286, 412
Eam1104I	CTCTTC	2 cut(s)	642, 699
EarI	CTCTTC	2 cut(s)	642, 699
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	1 cut(s)	314
FaiI	YATR	3 cut(s)	210, 312, 716
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	519
FokI	GGATG	2 cut(s)	341, 512
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	95, 248
GlaI	GCGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	531, 674
HapII	CCGG	3 cut(s)	69, 241, 646
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	6 cut(s)	17, 85, 253, 538, 606, 792
HpaII	CCGG	3 cut(s)	69, 241, 646
HphI	GGTGA	2 cut(s)	505, 716
Hpy166II	GTNNAC	2 cut(s)	238, 565
Hpy188I	TCNGA	5 cut(s)	16, 84, 138, 537, 738
Hpy188III	TCNNGA	2 cut(s)	248, 458
Hpy8I	GTNNAC	2 cut(s)	238, 565
HpyAV	CCTTC	3 cut(s)	490, 542, 682
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	3 cut(s)	122, 420, 561
HpyCH4V	TGCA	2 cut(s)	314, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	4 cut(s)	150, 612, 745, 781
HpySE526I	ACGT	3 cut(s)	122, 420, 561
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
LguI	GCTCTTC	1 cut(s)	699
MaeI	CTAG	2 cut(s)	95, 248
MaeII	ACGT	3 cut(s)	122, 420, 561
MaeIII	GTNAC	3 cut(s)	90, 172, 198
MalI	GATC	8 cut(s)	81, 225, 246, 309, 462, 521, 555, 735
MboI	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
MboII	GAAGA	6 cut(s)	383, 395, 629, 630, 686, 697
MflI	RGATCY	2 cut(s)	244, 460
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	287, 523, 576
MlyI	GAGTC	4 cut(s)	247, 532, 600, 801
MnlI	CCTC	5 cut(s)	91, 214, 479, 642, 737
MseI	TTAA	4 cut(s)	285, 290, 402, 411
MslI	CAYNNNNRTG	2 cut(s)	125, 729
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	3 cut(s)	69, 241, 646
MspR9I	CCNGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	675
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	90, 198
OliI	CACNNNNGTG	2 cut(s)	125, 729
PciSI	GCTCTTC	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	17, 85
PflMI	CCANNNNNTGG	1 cut(s)	587
PleI	GAGTC	4 cut(s)	247, 532, 600, 800
PpsI	GAGTC	4 cut(s)	247, 532, 600, 800
Psp124BI	GAGCTC	1 cut(s)	151
Psp1406I	AACGTT	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	238, 673
PstNI	CAGNNNCTG	2 cut(s)	56, 88
PsuI	RGATCY	2 cut(s)	244, 460
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	469, 597
RsaNI	GTAC	2 cut(s)	468, 596
RseI	CAYNNNNRTG	2 cut(s)	125, 729
SacI	GAGCTC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	699
SaqAI	TTAA	4 cut(s)	285, 290, 402, 411
Sau3AI	GATC	8 cut(s)	79, 223, 244, 307, 460, 519, 553, 733
Sau96I	GGNCC	2 cut(s)	238, 673
ScaI	AGTACT	1 cut(s)	597
SchI	GAGTC	4 cut(s)	247, 532, 600, 801
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	125, 729
Sse9I	AATT	3 cut(s)	287, 523, 576
SsiI	CCGC	2 cut(s)	41, 196
SspI	AATATT	2 cut(s)	10, 586
SspMI	CTAG	2 cut(s)	95, 248
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	3 cut(s)	125, 423, 564
TaqI	TCGA	5 cut(s)	78, 226, 438, 697, 790
TasI	AATT	3 cut(s)	287, 523, 576
TatI	WGTACW	2 cut(s)	467, 595
TfiI	GAWTC	2 cut(s)	17, 85
Tru1I	TTAA	4 cut(s)	285, 290, 402, 411
Tru9I	TTAA	4 cut(s)	285, 290, 402, 411
TscAI	CASTG	2 cut(s)	61, 220
TseFI	GTSAC	2 cut(s)	90, 198
Tsp45I	GTSAC	2 cut(s)	90, 198
TspDTI	ATGAA	2 cut(s)	178, 516
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	2 cut(s)	61, 220
Van91I	CCANNNNNTGG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
XspI	CTAG	2 cut(s)	95, 248
ZrmI	AGTACT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.