Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0001830

Physical Location & Seq

Genomic Coordinates Reverse (-)

29893 .. 33749

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003877.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggtccaagactgtaaatttacgactttaccccgaccgacatggaaccccatcaagctgcgaactttgcgcaaccccgccatcacaatcggacagccagaaaagaaaagggtgggttcgaatttagggcttctcccttttgccctaaattcccaattcgaatttcaatcgtgcccacaaaagatggccggaaatatttcagaatctttgaaaggtaaaaagcgcgcgcgagagtcccacgccgaacccgaaaccgccgatatcgatcatattctatcgttagaggaaaatcttacgtttagtgatacattggtggctcttcgcataatgggagaacagtttccgcaaattgacaagccaatccagcctttcattttgcggtcacagttgtatagcagtgtagaggacaggacacaagtggaccgggacctggagactctaagaagggagaaagtgttgcgcatttttaaattaaatacggggcaagatgatcatgccataatgtttttggatgactacctatgccaggtagaccaagttgtgaaaagattggaaggacaaaagggaagagatgttcttgaagtttttaactggttcagatcacacgttattgatttcaagcttgaacctagtattgaacaccaagaactttgtacattattatcacttggaggaaaggttaaagatgaacacatctcacttttaatgaattctggccttcttactcggcaacttattgacccaaacatttactggttcgcaattccaaatatcggttcagtactcaaaggcctctctcagggaagaaaggaagttctttcccttttaaaccgcaggagatacaaagaaatgatgttggcacccctagagaagaagcgtcttagattctcttcacttgatatgagatttcatcttcgtgatctgataggctcaggtcatctcaaaaccgtccaaataccaacagatgagactaagcaatgccattgtggcaactggcaaggaaataagtttggtgattgctcggagatgacatgttacatgttggattcttcttgggttgctgaatcagaagtagccaaaaacgagtacttaaacatggacgccgccgtcctttcggctcacattatatacgacttcaaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stk19

Protein Analysis

381

Amino Acids

43.86

Weight (kDa)

7.14

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20495 AT2G20495 AT2G20495 AT2G20495 AT2G20495
fragaria_vesca	FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270
malus_domestica	MD05G1195200.v1.1
prunus_persica	Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1
pyrus_communis	pycom05g18250
rosa_chinensis	RchiOBHm_Chr6g0287851
rosa_laevigata	RLG00000012462
rosa_multiflora	Rmu_sc0003877.1_g000003 Rmu_sc0007724.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180720 Rroxscaffold_7G00180830
rosa_rugosa	Rorug06G0192600 Rorug06G0192700 Rorug06G0192800
rosa_samantha	Rh6AG302100 Rh6BG308200 Rh6CG301500 Rh6CG315900 Rh6DG300700
rosa_wichuraiana	Rw6G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1106
Acc16I	TGCGCA	2 cut(s)	71, 461
AccB1I	GGYRCC	1 cut(s)	859
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	3 cut(s)	225, 227, 229
AciI	CCGC	6 cut(s)	78, 255, 344, 379, 832, 1104
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	5 cut(s)	17, 121, 148, 161, 709
AcyI	GRCGYC	1 cut(s)	1101
AfaI	GTAC	3 cut(s)	655, 783, 1088
AfiI	CCNNNNNNNGG	4 cut(s)	430, 526, 773, 799
AflIII	ACRYGT	3 cut(s)	604, 1031, 1038
AgsI	TTSAA	7 cut(s)	167, 211, 581, 619, 626, 638, 1138
AjnI	CCWGG	2 cut(s)	429, 525
AjuI	GAANNNNNNNTTGG	4 cut(s)	147, 179, 760, 792
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	2 cut(s)	58, 622
AluI	AGCT	2 cut(s)	58, 622
Alw26I	GTCTC	2 cut(s)	428, 962
AoxI	GGCC	3 cut(s)	186, 715, 790
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	5 cut(s)	17, 121, 148, 161, 709
Asp700I	GAANNNNTTC	2 cut(s)	196, 339
AspLEI	GCGC	5 cut(s)	72, 225, 227, 229, 462
AspS9I	GGNCC	3 cut(s)	4, 421, 427
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	1025
AsuII	TTCGAA	2 cut(s)	119, 159
AvaII	GGWCC	3 cut(s)	4, 421, 427
BaeGI	GKGCMC	1 cut(s)	176
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BanI	GGYRCC	1 cut(s)	859
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	3 cut(s)	59, 89, 178
BceAI	ACGGC	1 cut(s)	1091
BciT130I	CCWGG	2 cut(s)	431, 527
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	428, 962
BfaI	CTAG	2 cut(s)	630, 866
BglI	GCCNNNNNGGC	1 cut(s)	987
BisI	GCNGC	2 cut(s)	59, 1104
BlsI	GCNGC	2 cut(s)	60, 1105
BmcAI	AGTACT	2 cut(s)	783, 1088
Bme1390I	CCNGG	3 cut(s)	425, 431, 527
Bme18I	GGWCC	3 cut(s)	4, 421, 427
BmgT120I	GGNCC	3 cut(s)	4, 421, 427
BmiI	GGNNCC	3 cut(s)	47, 428, 861
BmrFI	CCNGG	3 cut(s)	425, 431, 527
BpmI	CTGGAG	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	931
Bpu14I	TTCGAA	2 cut(s)	119, 159
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	1101
BsaXI	ACNNNNNCTCC	4 cut(s)	440, 470, 663, 693
Bsc4I	CCNNNNNNNGG	4 cut(s)	430, 526, 773, 799
Bse1I	ACTGG	3 cut(s)	596, 758, 998
Bse3DI	GCAATG	1 cut(s)	983
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	431, 527
BseCI	ATCGAT	1 cut(s)	264
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	4 cut(s)	430, 526, 773, 799
BseMI	GCAATG	1 cut(s)	983
BseMII	CTCAG	2 cut(s)	812, 945
BseNI	ACTGG	3 cut(s)	596, 758, 998
BsePI	GCGCGC	2 cut(s)	223, 225
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	45
Bsh1236I	CGCG	3 cut(s)	225, 227, 229
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	188, 717, 792
BshNI	GGYRCC	1 cut(s)	859
BshVI	ATCGAT	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	189, 424
BslFI	GGGAC	2 cut(s)	220, 440
BslI	CCNNNNNNNGG	4 cut(s)	430, 526, 773, 799
BsmAI	GTCTC	2 cut(s)	428, 962
BsmFI	GGGAC	2 cut(s)	220, 440
BsnI	GGCC	3 cut(s)	188, 717, 792
Bsp119I	TTCGAA	2 cut(s)	119, 159
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	653
Bsp143I	GATC	4 cut(s)	265, 490, 599, 919
BspACI	CCGC	6 cut(s)	78, 255, 344, 379, 832, 1104
BspANI	GGCC	3 cut(s)	188, 717, 792
BspCNI	CTCAG	2 cut(s)	811, 944
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	3 cut(s)	225, 227, 229
BspLI	GGNNCC	3 cut(s)	47, 428, 861
BspQI	GCTCTTC	1 cut(s)	324
BspT104I	TTCGAA	2 cut(s)	119, 159
BspT107I	GGYRCC	1 cut(s)	859
BsrDI	GCAATG	1 cut(s)	983
BsrGI	TGTACA	1 cut(s)	653
BsrI	ACTGG	3 cut(s)	596, 758, 998
BssHII	GCGCGC	2 cut(s)	223, 225
BssMI	GATC	4 cut(s)	265, 490, 599, 919
BssNI	GRCGYC	1 cut(s)	1101
Bst2UI	CCWGG	2 cut(s)	431, 527
Bst4CI	ACNGT	4 cut(s)	14, 339, 387, 949
Bst6I	CTCTTC	3 cut(s)	324, 562, 895
BstACI	GRCGYC	1 cut(s)	1101
BstAUI	TGTACA	1 cut(s)	653
BstBI	TTCGAA	2 cut(s)	119, 159
BstC8I	GCNNGC	2 cut(s)	225, 227
BstDEI	CTNAG	5 cut(s)	440, 798, 881, 931, 972
BstENI	CCTNNNNNAGG	2 cut(s)	524, 797
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	3 cut(s)	225, 227, 229
BstHHI	GCGC	5 cut(s)	72, 225, 227, 229, 462
BstKTI	GATC	4 cut(s)	268, 493, 602, 922
BstMAI	GTCTC	2 cut(s)	428, 962
BstMBI	GATC	4 cut(s)	265, 490, 599, 919
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 364, 987
BstNI	CCWGG	2 cut(s)	431, 527
BstNSI	RCATGY	2 cut(s)	1035, 1042
BstSCI	CCNGG	3 cut(s)	423, 429, 525
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	3 cut(s)	225, 227, 229
BstV1I	GCAGC	1 cut(s)	45
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	188, 717, 792
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	225, 227
CfoI	GCGC	5 cut(s)	72, 225, 227, 229, 462
Cfr13I	GGNCC	3 cut(s)	4, 421, 427
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	2 cut(s)	866, 1109
Csp6I	GTAC	3 cut(s)	654, 782, 1087
CviAII	CATG	5 cut(s)	42, 494, 1032, 1039, 1096
CviQI	GTAC	3 cut(s)	654, 782, 1087
DdeI	CTNAG	5 cut(s)	440, 798, 881, 931, 972
DpnI	GATC	4 cut(s)	267, 492, 601, 921
DpnII	GATC	4 cut(s)	265, 490, 599, 919
DraI	TTTAAA	2 cut(s)	469, 828
DrdI	GACNNNNNNGTC	1 cut(s)	1106
DseDI	GACNNNNNNGTC	1 cut(s)	1106
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	3 cut(s)	324, 562, 895
EarI	CTCTTC	3 cut(s)	324, 562, 895
Eco147I	AGGCCT	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	3 cut(s)	4, 421, 427
EcoNI	CCTNNNNNAGG	2 cut(s)	524, 797
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	429, 525
EcoRV	GATATC	1 cut(s)	262
FaeI	CATG	5 cut(s)	45, 497, 1035, 1042, 1099
FaqI	GGGAC	2 cut(s)	220, 440
FatI	CATG	5 cut(s)	41, 493, 1031, 1038, 1095
FauI	CCCGC	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	59, 1104
FokI	GGATG	1 cut(s)	524
Fsp4HI	GCNGC	2 cut(s)	59, 1104
FspBI	CTAG	2 cut(s)	630, 866
FspI	TGCGCA	2 cut(s)	71, 461
GlaI	GCGC	5 cut(s)	71, 224, 226, 228, 461
GluI	GCNGC	2 cut(s)	59, 1104
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	188, 717, 792
HapII	CCGG	2 cut(s)	189, 424
HgaI	GACGC	2 cut(s)	866, 1109
HhaI	GCGC	5 cut(s)	72, 225, 227, 229, 462
Hin1I	GRCGYC	1 cut(s)	1101
Hin1II	CATG	5 cut(s)	45, 497, 1035, 1042, 1099
Hin6I	GCGC	5 cut(s)	70, 223, 225, 227, 460
HinP1I	GCGC	5 cut(s)	70, 223, 225, 227, 460
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	6 cut(s)	203, 233, 436, 885, 1046, 1064
HpaII	CCGG	2 cut(s)	189, 424
HphI	GGTGA	1 cut(s)	1025
Hpy166II	GTNNAC	2 cut(s)	421, 532
Hpy188I	TCNGA	6 cut(s)	92, 202, 599, 924, 1024, 1069
Hpy188III	TCNNGA	2 cut(s)	578, 917
Hpy8I	GTNNAC	2 cut(s)	421, 532
HpyAV	CCTTC	3 cut(s)	438, 548, 728
HpyCH4III	ACNGT	4 cut(s)	14, 339, 387, 949
HpyCH4IV	ACGT	2 cut(s)	296, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 364, 987
HpyF3I	CTNAG	5 cut(s)	440, 798, 881, 931, 972
HpySE526I	ACGT	2 cut(s)	296, 606
Hsp92I	GRCGYC	1 cut(s)	1101
Hsp92II	CATG	5 cut(s)	45, 497, 1035, 1042, 1099
HspAI	GCGC	5 cut(s)	70, 223, 225, 227, 460
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	265, 490, 599, 919
LguI	GCTCTTC	1 cut(s)	324
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	630, 866
MaeII	ACGT	2 cut(s)	296, 606
MaeIII	GTNAC	2 cut(s)	381, 1034
MalI	GATC	4 cut(s)	267, 492, 601, 921
MauBI	CGCGCGCG	1 cut(s)	225
MboI	GATC	4 cut(s)	265, 490, 599, 919
MboII	GAAGA	7 cut(s)	311, 579, 816, 882, 883, 905, 1041
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	9 cut(s)	17, 121, 148, 155, 161, 348, 470, 709, 762
MlyI	GAGTC	2 cut(s)	242, 430
MmeI	TCCRAC	1 cut(s)	1023
MnlI	CCTC	4 cut(s)	277, 397, 665, 803
MroXI	GAANNNNTTC	2 cut(s)	196, 339
MseI	TTAA	7 cut(s)	468, 473, 588, 681, 704, 827, 1091
MslI	CAYNNNNRTG	1 cut(s)	915
MspI	CCGG	2 cut(s)	189, 424
MspR9I	CCNGG	3 cut(s)	425, 431, 527
MvaI	CCWGG	2 cut(s)	431, 527
MvnI	CGCG	3 cut(s)	225, 227, 229
MwoI	GCNNNNNNNGC	3 cut(s)	67, 364, 987
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	4 cut(s)	265, 490, 599, 919
NlaIII	CATG	5 cut(s)	45, 497, 1035, 1042, 1099
NlaIV	GGNNCC	3 cut(s)	47, 428, 861
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	381
NsbI	TGCGCA	2 cut(s)	71, 461
NspI	RCATGY	2 cut(s)	1035, 1042
NspV	TTCGAA	2 cut(s)	119, 159
PauI	GCGCGC	2 cut(s)	223, 225
PceI	AGGCCT	1 cut(s)	792
PciI	ACATGT	2 cut(s)	1031, 1038
PciSI	GCTCTTC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PdmI	GAANNNNTTC	2 cut(s)	196, 339
PfeI	GAWTC	4 cut(s)	203, 885, 1046, 1064
PkrI	GCNGC	2 cut(s)	60, 1105
PleI	GAGTC	2 cut(s)	241, 430
PpsI	GAGTC	2 cut(s)	241, 430
PpuMI	RGGWCCY	1 cut(s)	427
PscI	ACATGT	2 cut(s)	1031, 1038
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	429, 525
PspGI	CCWGG	2 cut(s)	429, 525
PspN4I	GGNNCC	3 cut(s)	47, 428, 861
PspPI	GGNCC	3 cut(s)	4, 421, 427
PspPPI	RGGWCCY	1 cut(s)	427
PteI	GCGCGC	2 cut(s)	223, 225
RsaI	GTAC	3 cut(s)	655, 783, 1088
RsaNI	GTAC	3 cut(s)	654, 782, 1087
RseI	CAYNNNNRTG	1 cut(s)	915
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	7 cut(s)	468, 473, 588, 681, 704, 827, 1091
SatI	GCNGC	2 cut(s)	59, 1104
Sau3AI	GATC	4 cut(s)	265, 490, 599, 919
Sau96I	GGNCC	3 cut(s)	4, 421, 427
ScaI	AGTACT	2 cut(s)	783, 1088
SchI	GAGTC	2 cut(s)	242, 430
ScrFI	CCNGG	3 cut(s)	425, 431, 527
SduI	GDGCHC	1 cut(s)	176
SfuI	TTCGAA	2 cut(s)	119, 159
SinI	GGWCC	3 cut(s)	4, 421, 427
SmiMI	CAYNNNNRTG	1 cut(s)	915
Sse9I	AATT	9 cut(s)	17, 121, 148, 155, 161, 348, 470, 709, 762
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	6 cut(s)	78, 255, 344, 379, 832, 1104
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	2 cut(s)	630, 866
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	3 cut(s)	423, 429, 525
TaaI	ACNGT	4 cut(s)	14, 339, 387, 949
TaiI	ACGT	2 cut(s)	299, 609
TaqI	TCGA	3 cut(s)	119, 159, 264
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	9 cut(s)	17, 121, 148, 155, 161, 348, 470, 709, 762
TatI	WGTACW	3 cut(s)	653, 781, 1086
TauI	GCSGC	1 cut(s)	1106
TfiI	GAWTC	4 cut(s)	203, 885, 1046, 1064
Tru1I	TTAA	7 cut(s)	468, 473, 588, 681, 704, 827, 1091
Tru9I	TTAA	7 cut(s)	468, 473, 588, 681, 704, 827, 1091
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	4 cut(s)	361, 702, 722, 899
TspRI	CASTG	1 cut(s)	403
VpaK11BI	GGWCC	3 cut(s)	4, 421, 427
XagI	CCTNNNNNAGG	2 cut(s)	524, 797
XapI	RAATTY	5 cut(s)	17, 121, 148, 161, 709
XceI	RCATGY	2 cut(s)	1035, 1042
XcmI	CCANNNNNNNNNTGG	2 cut(s)	505, 750
XmiI	GTMKAC	1 cut(s)	531
XmnI	GAANNNNTTC	2 cut(s)	196, 339
XspI	CTAG	2 cut(s)	630, 866
ZrmI	AGTACT	2 cut(s)	783, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.