Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007724.1

Orthogroup ID

OG0001830

Physical Location & Seq

Genomic Coordinates Reverse (-)

45204 .. 48763

Gene Structure 3560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007724.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggaaccccatcaagctgcaaactttgcgcaaccccgccatcacaatcggacagccagaaaagaaaagggtggagattcgaatttagggcttctccgttttgccctaaattcccaattcgaatttcaatcgtgcccacaaaagatggccggaaatatttcagaatctttgaaaggtaaaaagcgcgcgcgagaatcccacgccgaacccgaaaccgccgatatcgatcatattctatcgttagaggaaaatcttacgtttagtgatacattggtggctcttcgcataatgcgagaacagtttccgcaaattgacaagccaatccagcctttcattttgcggtcacagttgtatagcagtgtagaggacaggacacaagtggaccgggacctggagactctaagaagggagaaagtgttgcgcatttttaaattaaatacagggcaagatgatcatgccataatgtttttggatgactacctatgccaggtagaccgaattgtgaaaagattggaaggagaaaagggaagagatgttcttgaagtttttaactggttcagatcacacgttattgatttcaagcttgaacctagtattgaacaccaagaacttgtgatactcaaaggcctctctcagggaagaaaggaagttctttcccttttaaaccgcaggagatacaaagaaatgatgttggcacccctagagaagaagcgtcttagattctctacacttgatatgagatttcatcttcgtgatctgataggctcaggtcatctcaaaactgtccaaataccaacagatgagactaagcaatgccattgtggcaactggcaaggaaataaggttggtgattgctcggagatgacatgttacatgttggattcttcttgggttgctgaatcagaagtagccaaaaacgagtacttaaacttcggacgccgccgtcctttcggctcacattatatacgacgtcaaagaataagacgaaacaaaggcaactcgctgctacgccttagacccatcttgcctaaaaagcatcgtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stk19

Protein Analysis

348

Amino Acids

40.82

Weight (kDa)

9.57

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20495 AT2G20495 AT2G20495 AT2G20495 AT2G20495
fragaria_vesca	FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270 FvH4_2g21270
malus_domestica	MD05G1195200.v1.1
prunus_persica	Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1 Prupe.8G221800_v2.0.a1
pyrus_communis	pycom05g18250
rosa_chinensis	RchiOBHm_Chr6g0287851
rosa_laevigata	RLG00000012462
rosa_multiflora	Rmu_sc0003877.1_g000003 Rmu_sc0007724.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180720 Rroxscaffold_7G00180830
rosa_rugosa	Rorug06G0192600 Rorug06G0192700 Rorug06G0192800
rosa_samantha	Rh6AG302100 Rh6BG308200 Rh6CG301500 Rh6CG315900 Rh6DG300700
rosa_wichuraiana	Rw6G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	942
AatII	GACGTC	1 cut(s)	973
Acc16I	TGCGCA	2 cut(s)	30, 422
AccB1I	GGYRCC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	3 cut(s)	186, 188, 190
AciI	CCGC	6 cut(s)	37, 216, 305, 340, 667, 940
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	82, 109, 122
AcyI	GRCGYC	2 cut(s)	937, 970
AfaI	GTAC	1 cut(s)	923
AfiI	CCNNNNNNNGG	3 cut(s)	391, 487, 634
AflIII	ACRYGT	3 cut(s)	565, 866, 873
AgsI	TTSAA	6 cut(s)	128, 172, 542, 580, 587, 599
AjnI	CCWGG	2 cut(s)	390, 486
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	2 cut(s)	17, 583
AluI	AGCT	2 cut(s)	17, 583
Alw26I	GTCTC	2 cut(s)	389, 797
AoxI	GGCC	2 cut(s)	147, 625
ApeKI	GCWGC	2 cut(s)	17, 1003
ApoI	RAATTY	3 cut(s)	82, 109, 122
Asp700I	GAANNNNTTC	2 cut(s)	157, 300
AspLEI	GCGC	5 cut(s)	31, 186, 188, 190, 423
AspS9I	GGNCC	2 cut(s)	382, 388
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	860
AsuII	TTCGAA	2 cut(s)	80, 120
AvaII	GGWCC	2 cut(s)	382, 388
BaeGI	GKGCMC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BanI	GGYRCC	1 cut(s)	694
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
BbvI	GCAGC	2 cut(s)	4, 990
BccI	CCATC	4 cut(s)	18, 48, 139, 1028
BceAI	ACGGC	1 cut(s)	927
BciT130I	CCWGG	2 cut(s)	392, 488
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	389, 797
BfaI	CTAG	2 cut(s)	591, 701
BglI	GCCNNNNNGGC	1 cut(s)	822
BisI	GCNGC	3 cut(s)	18, 940, 1004
BlsI	GCNGC	3 cut(s)	19, 941, 1005
BmcAI	AGTACT	1 cut(s)	923
Bme1390I	CCNGG	3 cut(s)	386, 392, 488
Bme18I	GGWCC	2 cut(s)	382, 388
BmgT120I	GGNCC	2 cut(s)	382, 388
BmiI	GGNNCC	3 cut(s)	6, 389, 696
BmrFI	CCNGG	3 cut(s)	386, 392, 488
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	766
Bpu14I	TTCGAA	2 cut(s)	80, 120
BpuMI	CCSGG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	937, 970
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 487, 634
Bse1I	ACTGG	2 cut(s)	557, 833
Bse3DI	GCAATG	1 cut(s)	818
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	392, 488
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	391, 487, 634
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	2 cut(s)	647, 780
BseNI	ACTGG	2 cut(s)	557, 833
BsePI	GCGCGC	2 cut(s)	184, 186
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	4, 990
Bsh1236I	CGCG	3 cut(s)	186, 188, 190
BshFI	GGCC	2 cut(s)	149, 627
BshNI	GGYRCC	1 cut(s)	694
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	150, 385
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	391, 487, 634
BsmAI	GTCTC	2 cut(s)	389, 797
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	149, 627
Bsp119I	TTCGAA	2 cut(s)	80, 120
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	226, 451, 560, 754
BspACI	CCGC	6 cut(s)	37, 216, 305, 340, 667, 940
BspANI	GGCC	2 cut(s)	149, 627
BspCNI	CTCAG	2 cut(s)	646, 779
BspDI	ATCGAT	1 cut(s)	225
BspFNI	CGCG	3 cut(s)	186, 188, 190
BspLI	GGNNCC	3 cut(s)	6, 389, 696
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	2 cut(s)	80, 120
BspT107I	GGYRCC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	557, 833
BssHII	GCGCGC	2 cut(s)	184, 186
BssMI	GATC	4 cut(s)	226, 451, 560, 754
BssNI	GRCGYC	2 cut(s)	937, 970
Bst2UI	CCWGG	2 cut(s)	392, 488
Bst4CI	ACNGT	3 cut(s)	300, 348, 784
Bst6I	CTCTTC	2 cut(s)	285, 523
BstACI	GRCGYC	2 cut(s)	937, 970
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	2 cut(s)	80, 120
BstC8I	GCNNGC	2 cut(s)	186, 188
BstDEI	CTNAG	6 cut(s)	401, 633, 716, 766, 807, 1013
BstENI	CCTNNNNNAGG	2 cut(s)	485, 632
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	3 cut(s)	186, 188, 190
BstHHI	GCGC	5 cut(s)	31, 186, 188, 190, 423
BstKTI	GATC	4 cut(s)	229, 454, 563, 757
BstMAI	GTCTC	2 cut(s)	389, 797
BstMBI	GATC	4 cut(s)	226, 451, 560, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 325, 822, 1033
BstNI	CCWGG	2 cut(s)	392, 488
BstNSI	RCATGY	2 cut(s)	870, 877
BstSCI	CCNGG	3 cut(s)	384, 390, 486
BstSLI	GKGCMC	1 cut(s)	137
BstUI	CGCG	3 cut(s)	186, 188, 190
BstV1I	GCAGC	2 cut(s)	4, 990
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	149, 627
BsuTUI	ATCGAT	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	186, 188
CfoI	GCGC	5 cut(s)	31, 186, 188, 190, 423
Cfr13I	GGNCC	2 cut(s)	382, 388
ClaI	ATCGAT	1 cut(s)	225
CseI	GACGC	2 cut(s)	701, 945
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	3 cut(s)	455, 867, 874
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	6 cut(s)	401, 633, 716, 766, 807, 1013
DpnI	GATC	4 cut(s)	228, 453, 562, 756
DpnII	GATC	4 cut(s)	226, 451, 560, 754
DraI	TTTAAA	2 cut(s)	430, 663
DrdI	GACNNNNNNGTC	1 cut(s)	942
DseDI	GACNNNNNNGTC	1 cut(s)	942
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	285, 523
EarI	CTCTTC	2 cut(s)	285, 523
Eco147I	AGGCCT	1 cut(s)	627
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	382, 388
EcoNI	CCTNNNNNAGG	2 cut(s)	485, 632
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	390, 486
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	3 cut(s)	458, 870, 877
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	454, 866, 873
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	18, 940, 1004
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	18, 940, 1004
FspBI	CTAG	2 cut(s)	591, 701
FspI	TGCGCA	2 cut(s)	30, 422
GlaI	GCGC	5 cut(s)	30, 185, 187, 189, 422
GluI	GCNGC	3 cut(s)	18, 940, 1004
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	149, 627
HapII	CCGG	2 cut(s)	150, 385
HgaI	GACGC	2 cut(s)	701, 945
HhaI	GCGC	5 cut(s)	31, 186, 188, 190, 423
Hin1I	GRCGYC	2 cut(s)	937, 970
Hin1II	CATG	3 cut(s)	458, 870, 877
Hin6I	GCGC	5 cut(s)	29, 184, 186, 188, 421
HinP1I	GCGC	5 cut(s)	29, 184, 186, 188, 421
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	7 cut(s)	77, 164, 194, 397, 720, 881, 899
HpaII	CCGG	2 cut(s)	150, 385
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	2 cut(s)	382, 493
Hpy188I	TCNGA	7 cut(s)	51, 163, 560, 759, 859, 904, 935
Hpy188III	TCNNGA	2 cut(s)	539, 752
Hpy8I	GTNNAC	2 cut(s)	382, 493
Hpy99I	CGWCG	1 cut(s)	972
HpyAV	CCTTC	2 cut(s)	399, 509
HpyCH4III	ACNGT	3 cut(s)	300, 348, 784
HpyCH4IV	ACGT	3 cut(s)	257, 567, 970
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 325, 822, 1033
HpyF3I	CTNAG	6 cut(s)	401, 633, 716, 766, 807, 1013
HpySE526I	ACGT	3 cut(s)	257, 567, 970
Hsp92I	GRCGYC	2 cut(s)	937, 970
Hsp92II	CATG	3 cut(s)	458, 870, 877
HspAI	GCGC	5 cut(s)	29, 184, 186, 188, 421
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	226, 451, 560, 754
LguI	GCTCTTC	1 cut(s)	285
Lsp1109I	GCAGC	2 cut(s)	4, 990
MaeI	CTAG	2 cut(s)	591, 701
MaeII	ACGT	3 cut(s)	257, 567, 970
MaeIII	GTNAC	2 cut(s)	342, 869
MalI	GATC	4 cut(s)	228, 453, 562, 756
MauBI	CGCGCGCG	1 cut(s)	186
MboI	GATC	4 cut(s)	226, 451, 560, 754
MboII	GAAGA	6 cut(s)	272, 540, 651, 718, 740, 876
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	7 cut(s)	82, 109, 116, 122, 309, 431, 498
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	3 cut(s)	238, 358, 638
MroXI	GAANNNNTTC	2 cut(s)	157, 300
MseI	TTAA	5 cut(s)	429, 434, 549, 662, 926
MslI	CAYNNNNRTG	1 cut(s)	750
MspI	CCGG	2 cut(s)	150, 385
MspR9I	CCNGG	3 cut(s)	386, 392, 488
MvaI	CCWGG	2 cut(s)	392, 488
MvnI	CGCG	3 cut(s)	186, 188, 190
MwoI	GCNNNNNNNGC	4 cut(s)	26, 325, 822, 1033
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	4 cut(s)	226, 451, 560, 754
NlaIII	CATG	3 cut(s)	458, 870, 877
NlaIV	GGNNCC	3 cut(s)	6, 389, 696
NmuCI	GTSAC	1 cut(s)	342
NsbI	TGCGCA	2 cut(s)	30, 422
NspI	RCATGY	2 cut(s)	870, 877
NspV	TTCGAA	2 cut(s)	80, 120
PauI	GCGCGC	2 cut(s)	184, 186
PceI	AGGCCT	1 cut(s)	627
PciI	ACATGT	2 cut(s)	866, 873
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 289
PdmI	GAANNNNTTC	2 cut(s)	157, 300
PfeI	GAWTC	6 cut(s)	77, 164, 194, 720, 881, 899
PkrI	GCNGC	3 cut(s)	19, 941, 1005
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	388
PscI	ACATGT	2 cut(s)	866, 873
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	390, 486
PspGI	CCWGG	2 cut(s)	390, 486
PspN4I	GGNNCC	3 cut(s)	6, 389, 696
PspPI	GGNCC	2 cut(s)	382, 388
PspPPI	RGGWCCY	1 cut(s)	388
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PteI	GCGCGC	2 cut(s)	184, 186
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	1 cut(s)	750
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	429, 434, 549, 662, 926
SatI	GCNGC	3 cut(s)	18, 940, 1004
Sau3AI	GATC	4 cut(s)	226, 451, 560, 754
Sau96I	GGNCC	2 cut(s)	382, 388
ScaI	AGTACT	1 cut(s)	923
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	386, 392, 488
SduI	GDGCHC	1 cut(s)	137
SfuI	TTCGAA	2 cut(s)	80, 120
SinI	GGWCC	2 cut(s)	382, 388
SmiMI	CAYNNNNRTG	1 cut(s)	750
Sse9I	AATT	7 cut(s)	82, 109, 116, 122, 309, 431, 498
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	6 cut(s)	37, 216, 305, 340, 667, 940
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	2 cut(s)	591, 701
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	3 cut(s)	384, 390, 486
TaaI	ACNGT	3 cut(s)	300, 348, 784
TaiI	ACGT	3 cut(s)	260, 570, 973
TaqI	TCGA	3 cut(s)	80, 120, 225
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	7 cut(s)	82, 109, 116, 122, 309, 431, 498
TatI	WGTACW	1 cut(s)	921
TauI	GCSGC	1 cut(s)	942
TfiI	GAWTC	6 cut(s)	77, 164, 194, 720, 881, 899
Tru1I	TTAA	5 cut(s)	429, 434, 549, 662, 926
Tru9I	TTAA	5 cut(s)	429, 434, 549, 662, 926
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	2 cut(s)	17, 1003
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	322, 734
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	382, 388
XagI	CCTNNNNNAGG	2 cut(s)	485, 632
XapI	RAATTY	3 cut(s)	82, 109, 122
XceI	RCATGY	2 cut(s)	870, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	2 cut(s)	157, 300
XspI	CTAG	2 cut(s)	591, 701
ZraI	GACGTC	1 cut(s)	971
ZrmI	AGTACT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.