Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010707

Physical Location & Seq

Genomic Coordinates Forward (+)

20913643 .. 20916859

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G236600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGCAGCGTCGAAACGTCGTCGTTGATGAGGGACTTGCTCAAGCAGGCCGGCGGCGTGGCGGTGGTTGATGGTGGGCTTGCCACCGAGCTCGAACGCCACGGCGCTGATCTCAACGATCCCCTCTGGAGCGCTAAATGCATCCTCACTTCCCCTCACCTCATTCGAACGGTTCACCTTGATTACCTTGAAGCTGGTGCAGATATCATAATCACAGCATCTTATCAGGCCACCATTCAAGGTTTTGAGGCCAAAGGCTTTTCCACAGAAGAGAGTGAAGACTTGCTTAGAAAAAGTGTTGAAATTGCCCGTGAGGCACGTGATATCTATTACGACAGATGTACTGAAGGCGCTTCTGGTGACAGTGGAAATGGTAGAATTCTCAAGCGTCGGAAAATCTTAGTTGCAGCATCTGTGGGGAGCTACGGTGCTTATTTGGCTGATGGGTCTGAGTACAGTGGAGATTACGGTGAGGCTATGACACTAGGAACATTAAAAGATTTTCATCGGAGAAGGGTCCGAGTGCTAGCAGAAGCAGGTCCTGACCTACTTGCGTTTGAGACAGTTCCAAATAAGCTTGAAGCTCAGGCTTACGCTGAGCTTTTGGAAGAAGAAAACATGGAACTTCCTGCATGGTTTTCTTTCAACTCTAAAGATGGCGTGAATGTTGTTAGTGGTGATTCTCTCCTTGAATGTGCCGCAATTGCTGAATCATGCAAGAATGTTGTCGCAGTTGGAATAAACTGCACTCCTCCTAGATTTATTCATGGACTGTTAACATCAATTACAAAGGTGGCTACAAAACCGATAATTGTGTACCCCAATAGTGGTGAAAGCTATGATGCTGATAGAAAGATGTGGGTGCAAAATACTGGTGTTTCAGATGAAGATTTTGTCTCATATGTAAACAAATGGTGCGAGGTAGGGGCTTCCCTTGTAGGAGGCTGTTGCAGAACAACCCCACAGACTATCAGAGCCATATACAGGACCCTTCCCAATAGGTCAACAACTCCACCGGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006575 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0033477 GO:0033528 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

342

Amino Acids

37.06

Weight (kDa)

4.97

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63250 AT3G63250 AT3G63250
fragaria_vesca	FvH4_2g23130 FvH4_2g23130
malus_domestica	MD03G1260400.v1.1 MD11G1280700.v1.1
prunus_persica	Prupe.8G236600_v2.0.a1
pyrus_communis	pycom03g20810 pycom11g24850
rosa_chinensis	RchiOBHm_Chr6g0290381
rosa_laevigata	RLG00000012224
rosa_multiflora	Rmu_sc0025482.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177120
rosa_rugosa	Rorug06G0212100 Rorug06G0212100 Rorug06G0212200
rosa_samantha	Rh6DG322700
rosa_wichuraiana	Rw6G027840 Rw6G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	527
AciI	CCGC	3 cut(s)	54, 62, 699
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	366
AcvI	CACGTG	1 cut(s)	320
AfaI	GTAC	3 cut(s)	343, 455, 818
AfeI	AGCGCT	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	827, 984
AgsI	TTSAA	6 cut(s)	191, 239, 302, 581, 646, 692
AluBI	AGCT	7 cut(s)	91, 194, 423, 577, 584, 601, 837
AluI	AGCT	7 cut(s)	91, 194, 423, 577, 584, 601, 837
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	554, 901
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	2 cut(s)	413, 542
Aor51HI	AGCGCT	1 cut(s)	133
AoxI	GGCC	3 cut(s)	48, 228, 249
ApeKI	GCWGC	2 cut(s)	6, 407
ApoI	RAATTY	1 cut(s)	378
AspLEI	GCGC	3 cut(s)	107, 134, 353
AspS9I	GGNCC	3 cut(s)	517, 539, 987
AsuHPI	GGTGA	6 cut(s)	149, 167, 371, 482, 689, 842
AsuII	TTCGAA	1 cut(s)	166
AsuNHI	GCTAGC	1 cut(s)	526
AvaII	GGWCC	3 cut(s)	517, 539, 987
BanII	GRGCYC	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	18, 419
BccI	CCATC	3 cut(s)	65, 437, 650
BceAI	ACGGC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	554, 901
BfaI	CTAG	3 cut(s)	485, 527, 756
BfoI	RGCGCY	3 cut(s)	108, 135, 354
BfuAI	ACCTGC	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	4 cut(s)	7, 55, 408, 699
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	4 cut(s)	8, 56, 409, 700
Bme18I	GGWCC	3 cut(s)	517, 539, 987
BmgT120I	GGNCC	3 cut(s)	517, 539, 987
BmiI	GGNNCC	2 cut(s)	518, 989
BmsI	GCATC	4 cut(s)	150, 227, 419, 832
BmtI	GCTAGC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	166
BpuEI	CTTGAG	2 cut(s)	26, 368
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	1015
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 984
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	877
Bse8I	GATNNNNATC	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	2 cut(s)	827, 984
BseMII	CTCAG	3 cut(s)	441, 588, 599
BseNI	ACTGG	1 cut(s)	877
BseRI	GAGGAG	1 cut(s)	741
BseXI	GCAGC	2 cut(s)	18, 419
BsgI	GTGCAG	2 cut(s)	219, 730
BshFI	GGCC	3 cut(s)	50, 230, 251
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	51, 1016
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	827, 984
BsmAI	GTCTC	2 cut(s)	554, 901
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	50, 230, 251
Bsp119I	TTCGAA	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	109, 118
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	3 cut(s)	54, 62, 699
BspANI	GGCC	3 cut(s)	50, 230, 251
BspCNI	CTCAG	3 cut(s)	442, 589, 598
BspLI	GGNNCC	2 cut(s)	518, 989
BspMI	ACCTGC	1 cut(s)	527
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	877
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	109, 118
Bst4CI	ACNGT	7 cut(s)	172, 365, 428, 458, 470, 565, 774
Bst6I	CTCTTC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	4 cut(s)	48, 52, 81, 528
BstDEI	CTNAG	5 cut(s)	287, 400, 450, 585, 597
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	141
BstH2I	RGCGCY	3 cut(s)	108, 135, 354
BstHHI	GCGC	3 cut(s)	107, 134, 353
BstKTI	GATC	2 cut(s)	112, 121
BstMAI	GTCTC	2 cut(s)	554, 901
BstMBI	GATC	2 cut(s)	109, 118
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 314, 437, 704
BstV1I	GCAGC	2 cut(s)	18, 419
BstV2I	GAAGAC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	50, 230, 251
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	370, 463
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	4 cut(s)	48, 52, 81, 528
CaiI	CAGNNNCTG	2 cut(s)	413, 542
CfoI	GCGC	3 cut(s)	107, 134, 353
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	517, 539, 987
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	3 cut(s)	342, 454, 817
CviAII	CATG	4 cut(s)	619, 633, 714, 767
CviQI	GTAC	3 cut(s)	342, 454, 817
DdeI	CTNAG	5 cut(s)	287, 400, 450, 585, 597
DpnI	GATC	2 cut(s)	111, 120
DpnII	GATC	2 cut(s)	109, 118
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	2 cut(s)	205, 325
Eco47I	GGWCC	3 cut(s)	517, 539, 987
Eco47III	AGCGCT	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	539, 987
EcoRI	GAATTC	1 cut(s)	378
EcoRV	GATATC	2 cut(s)	205, 325
EcoT22I	ATGCAT	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	4 cut(s)	622, 636, 717, 770
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	618, 632, 713, 766
FauNDI	CATATG	1 cut(s)	901
Fnu4HI	GCNGC	4 cut(s)	7, 55, 408, 699
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	7, 55, 408, 699
FspBI	CTAG	3 cut(s)	485, 527, 756
GlaI	GCGC	3 cut(s)	106, 133, 352
GluI	GCNGC	4 cut(s)	7, 55, 408, 699
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	3 cut(s)	108, 135, 354
HaeIII	GGCC	3 cut(s)	50, 230, 251
HapII	CCGG	2 cut(s)	51, 1016
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	3 cut(s)	107, 134, 353
Hin1II	CATG	4 cut(s)	622, 636, 717, 770
Hin6I	GCGC	3 cut(s)	105, 132, 351
HinP1I	GCGC	3 cut(s)	105, 132, 351
HincII	GTYRAC	2 cut(s)	777, 1005
HindII	GTYRAC	2 cut(s)	777, 1005
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	2 cut(s)	680, 710
HpaI	GTTAAC	1 cut(s)	777
HpaII	CCGG	2 cut(s)	51, 1016
HphI	GGTGA	6 cut(s)	149, 167, 371, 482, 689, 842
Hpy166II	GTNNAC	5 cut(s)	175, 777, 817, 907, 1005
Hpy188I	TCNGA	6 cut(s)	393, 451, 510, 521, 883, 974
Hpy188III	TCNNGA	2 cut(s)	127, 542
Hpy8I	GTNNAC	5 cut(s)	175, 777, 817, 907, 1005
Hpy99I	CGWCG	4 cut(s)	14, 22, 25, 393
HpyAV	CCTTC	3 cut(s)	341, 507, 1001
HpyCH4III	ACNGT	7 cut(s)	172, 365, 428, 458, 470, 565, 774
HpyCH4IV	ACGT	2 cut(s)	17, 319
HpyCH4V	TGCA	8 cut(s)	141, 200, 407, 632, 717, 747, 865, 951
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 314, 437, 704
HpyF3I	CTNAG	5 cut(s)	287, 400, 450, 585, 597
HpySE526I	ACGT	2 cut(s)	17, 319
Hsp92II	CATG	4 cut(s)	622, 636, 717, 770
HspAI	GCGC	3 cut(s)	105, 132, 351
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	777
Kzo9I	GATC	2 cut(s)	109, 118
LmnI	GCTCC	3 cut(s)	129, 420, 1018
Lsp1109I	GCAGC	2 cut(s)	18, 419
LweI	GCATC	4 cut(s)	150, 227, 419, 832
MaeI	CTAG	3 cut(s)	485, 527, 756
MaeII	ACGT	2 cut(s)	17, 319
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	111, 120
MboI	GATC	2 cut(s)	109, 118
MboII	GAAGA	5 cut(s)	281, 290, 620, 623, 899
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	5 cut(s)	303, 378, 702, 783, 810
MmeI	TCCRAC	2 cut(s)	371, 715
Mph1103I	ATGCAT	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	2 cut(s)	494, 776
MspI	CCGG	2 cut(s)	51, 1016
MunI	CAATTG	1 cut(s)	702
MwoI	GCNNNNNNNGC	4 cut(s)	138, 314, 437, 704
NaeI	GCCGGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	901
NdeII	GATC	2 cut(s)	109, 118
NgoMIV	GCCGGC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	4 cut(s)	622, 636, 717, 770
NlaIV	GGNNCC	2 cut(s)	518, 989
NmuCI	GTSAC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	166
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	680, 710
PkrI	GCNGC	4 cut(s)	8, 56, 409, 700
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	320
PpuMI	RGGWCCY	2 cut(s)	539, 987
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	2 cut(s)	539, 987
PspCI	CACGTG	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	518, 989
PspPI	GGNCC	3 cut(s)	517, 539, 987
PspPPI	RGGWCCY	2 cut(s)	539, 987
PstNI	CAGNNNCTG	2 cut(s)	413, 542
RsaI	GTAC	3 cut(s)	343, 455, 818
RsaNI	GTAC	3 cut(s)	342, 454, 817
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	494, 776
SatI	GCNGC	4 cut(s)	7, 55, 408, 699
Sau3AI	GATC	2 cut(s)	109, 118
Sau96I	GGNCC	3 cut(s)	517, 539, 987
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	4 cut(s)	150, 227, 419, 832
SfuI	TTCGAA	1 cut(s)	166
SinI	GGWCC	3 cut(s)	517, 539, 987
SmlI	CTYRAG	2 cut(s)	41, 383
SmoI	CTYRAG	2 cut(s)	41, 383
Sse9I	AATT	5 cut(s)	303, 378, 702, 783, 810
SsiI	CCGC	3 cut(s)	54, 62, 699
SspMI	CTAG	3 cut(s)	485, 527, 756
SstI	GAGCTC	1 cut(s)	93
TaaI	ACNGT	7 cut(s)	172, 365, 428, 458, 470, 565, 774
TaiI	ACGT	2 cut(s)	20, 322
TaqI	TCGA	3 cut(s)	12, 93, 166
TasI	AATT	5 cut(s)	303, 378, 702, 783, 810
TatI	WGTACW	2 cut(s)	341, 453
TauI	GCSGC	2 cut(s)	57, 701
TfiI	GAWTC	2 cut(s)	680, 710
Tru1I	TTAA	2 cut(s)	494, 776
Tru9I	TTAA	2 cut(s)	494, 776
TscAI	CASTG	2 cut(s)	370, 463
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	6, 407
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	494, 755, 900
TspRI	CASTG	2 cut(s)	370, 463
VpaK11BI	GGWCC	3 cut(s)	517, 539, 987
XapI	RAATTY	1 cut(s)	378
XspI	CTAG	3 cut(s)	485, 527, 756
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.