Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025482.1

Orthogroup ID

OG0010707

Physical Location & Seq

Genomic Coordinates Forward (+)

186 .. 1547

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgacgctgggagcattaaaagagtttcatcgtagaagagtccaagtcctaactgaagcaggtcctgacctacttgcatttgaaactattccaaataagctggaagcccaggcttttgctgagcttttggaagaagaagacataaagcttcctgcatggttttgtttcaactctaaagatggaatcaatgttgttagtggtgattctttccttgaatgtgcctcggttgctgaatcctgtgagaaagttgttgctgtggggattaactgtactcctcctagatttattcatggattgatcacaacaattaaaaaggtggctacaaaacctatagttatatacccaaatagtggcgaaagttatgatgctgatcgaagggagtgggtacaaaatactggggtttcagatgaagattttgtttcatatgtaaacaaatggtgtgaggcaggggcttcccttgtgggaggttgttgcagaacaactccaaatactatcagggccatctacaaaacccttcccaatcggtcaacatctccacctgaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006575 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0033477 GO:0033528 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

5.15

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63250 AT3G63250 AT3G63250
fragaria_vesca	FvH4_2g23130 FvH4_2g23130
malus_domestica	MD03G1260400.v1.1 MD11G1280700.v1.1
prunus_persica	Prupe.8G236600_v2.0.a1
pyrus_communis	pycom03g20810 pycom11g24850
rosa_chinensis	RchiOBHm_Chr6g0290381
rosa_laevigata	RLG00000012224
rosa_multiflora	Rmu_sc0025482.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177120
rosa_rugosa	Rorug06G0212100 Rorug06G0212100 Rorug06G0212200
rosa_samantha	Rh6DG322700
rosa_wichuraiana	Rw6G027840 Rw6G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	271, 387
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	83, 169, 215
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	100, 124, 148
AluI	AGCT	3 cut(s)	100, 124, 148
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	62, 498
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	144
BccI	CCATC	2 cut(s)	173, 509
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	297
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	50
BlpI	GCTNAGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 498
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	108, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	108, 222
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	264
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	350
BsnI	GGCC	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	297, 370
Bsp1720I	GCTNAGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	108, 222
BssMI	GATC	2 cut(s)	297, 370
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	269, 546
Bst6I	CTCTTC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	300, 373
BstMBI	GATC	2 cut(s)	297, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	500
BveI	ACCTGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	62, 498
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	270, 386
CviAII	CATG	2 cut(s)	156, 290
CviJI	RGCY	8 cut(s)	100, 107, 113, 124, 148, 320, 452, 500
CviKI_1	RGCY	8 cut(s)	100, 107, 113, 124, 148, 320, 452, 500
CviQI	GTAC	2 cut(s)	270, 386
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	299, 372
DpnII	GATC	2 cut(s)	297, 370
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	159, 293
FaiI	YATR	9 cut(s)	143, 157, 291, 332, 338, 340, 363, 424, 426
FatI	CATG	2 cut(s)	155, 289
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	297
FspBI	CTAG	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	500
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	159, 293
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	39, 183, 203, 233
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	430, 528
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	430, 528
HpyAV	CCTTC	2 cut(s)	369, 524
HpyCH4III	ACNGT	2 cut(s)	269, 546
HpyCH4V	TGCA	3 cut(s)	77, 155, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	159, 293
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	297, 370
LmnI	GCTCC	1 cut(s)	11
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	279
MalI	GATC	2 cut(s)	299, 372
MboI	GATC	2 cut(s)	297, 370
MboII	GAAGA	5 cut(s)	48, 143, 146, 149, 422
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	232, 285, 436, 458
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	17, 264, 309
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	297, 370
NlaIII	CATG	2 cut(s)	159, 293
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	183, 203, 233
PflMI	CCANNNNNTGG	1 cut(s)	350
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	62, 498
PspPPI	RGGWCCY	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	271, 387
RsaNI	GTAC	2 cut(s)	270, 386
SaqAI	TTAA	3 cut(s)	17, 264, 309
Sau3AI	GATC	2 cut(s)	297, 370
Sau96I	GGNCC	2 cut(s)	62, 498
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	9 cut(s)	64, 72, 102, 126, 150, 318, 331, 469, 541
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	269, 546
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	183, 203, 233
Tru1I	TTAA	3 cut(s)	17, 264, 309
Tru9I	TTAA	3 cut(s)	17, 264, 309
TspDTI	ATGAA	4 cut(s)	17, 278, 411, 423
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.