Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014829

Physical Location & Seq

Genomic Coordinates Forward (+)

1800586 .. 1802362

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTTTGTAGGTCCAATTGGCAAAGGTGACAAAAAAGGGCAAAATGGAGCAATTTGGAGCAGTTTTGGACTTGGATTGGATAACATGCGTGGTGAGCACTTGGGATGGACGTTTTTGGTGGAATCAGAAATTAAAGGGAAACCTTATTCAATCTTATCTTATCCAACCTTATCTTATCCAACCTTATCCTTAACAAACCTTATCTTATCCTATCCTAATCCTACTTTACCTTATCTCCAGCTGCAAGGGGGATTCCTTATCACATTAAACCACTTTCTATCTGATTTGAGGGGTCCTAAAACAATAAATACTACCTATTTGCCGCAAGTTTATGAGAGGAAAAGAGTGATTTGTGCTTGCAAGGAAGGAGAGGAGGAGGAGTGCCATGCACCTGCACCTAAGGATTGTACCGAATCTGCCATTGGAGTGCTAGGGAATTCTAGAGTTCTTTCTATCCTTATTTTAGTTTCGATGTTTATTTTAGATTTCTTTTCAACCATGACGAACATGTCATATGCTTTATATAAATTGATTACATCCAGTTATTGTTTCATAAAACATGAATGCGATTTACTTATCTGTTTTATAGAAAACTTATTCTTTTATAATATAAGGGAATTTCACCTAATCGTTGTGAGCTTATATTTACAAGTAGTACAGGTCACTAGCCATGATTTTACGAATGCCTTGTCAATGCTTATGATTTTCACAAAACTTAATGATCGTTCATATGTATCTCTATCATGCTGTTCATATAGGGAAGTTGATAAGAATAATTTGATTGCGTCGCTGATGTTGTTCATGATTAATTTAGGGCATTGTCATTCATGGTTTATAGGAATAATAACTGGAAATCGATTTGTATGCATATGTTTCGTACCTAACTTAATTTGTTTCTTCAATTTACTTGTTTTAAGTCAGAATTCATCCAAAAACCTCCCCCCTTATTGTTTTGTGTCAGTTTACCCCGGCCTAGAACGATCCCTACTTGCTCATACTACAACTGTCTACAAGGGGTTTAATTTGTGTGTTGGTTTTTATCACATCAAATTTTGGCGCTGTTGCCGGGGATTAGCAAAATTGCTAATCTCCCATTTTTTTCTGTTTTTGTTTTTCTTGACTAGAAGTTCTCAACCAGTTCGTGGGCATATATTGGAGTTTGACGATGATTTTGAACAAACTTTGAGAAGGAAAAGGAAGCAGCTAGAACCAATCCACCTAGTTCTAGTTCTGAATCCGAATTTGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAACAAGACATGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

432

Amino Acids

49.71

Weight (kDa)

9.22

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014829)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g02150
rosa_chinensis	RchiOBHm_Chr1g0329021 RchiOBHm_Chr1g0342521 RchiOBHm_Chr1g0364761 RchiOBHm_Chr2g0125131 RchiOBHm_Chr2g0125561 RchiOBHm_Chr2g0154931 RchiOBHm_Chr2g0155441 RchiOBHm_Chr2g0157431 RchiOBHm_Chr2g0165251 RchiOBHm_Chr3g0491171 RchiOBHm_Chr4g0401921 RchiOBHm_Chr4g0424181 RchiOBHm_Chr7g0180001 RchiOBHm_Chr7g0181031 RchiOBHm_Chr7g0189041
rosa_roxburghii	Rroxscaffold_4G00303250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AarI	CACCTGC	1 cut(s)	400
AasI	GACNNNNNNGTC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	1008
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	975
AcsI	RAATTY	5 cut(s)	436, 617, 922, 1049, 1240
AfaI	GTAC	3 cut(s)	409, 657, 879
AfiI	CCNNNNNNNGG	1 cut(s)	1142
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	5 cut(s)	150, 495, 901, 1175, 1246
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	3 cut(s)	241, 639, 1204
AluI	AGCT	3 cut(s)	241, 639, 1204
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	975
AoxI	GGCC	1 cut(s)	970
ApeKI	GCWGC	2 cut(s)	241, 1201
ApoI	RAATTY	5 cut(s)	436, 617, 922, 1049, 1240
ArsI	GACNNNNNNTTYG	4 cut(s)	674, 706, 1154, 1186
AseI	ATTAAT	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	1059
AspS9I	GGNCC	2 cut(s)	11, 293
AsuC2I	CCSGG	2 cut(s)	969, 1067
AsuHPI	GGTGA	3 cut(s)	38, 104, 614
AvaII	GGWCC	2 cut(s)	11, 293
AxyI	CCTNAGG	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	228, 1213
BccI	CCATC	1 cut(s)	99
BcgI	CGANNNNNNTGC	4 cut(s)	846, 856, 880, 890
BcnI	CCSGG	2 cut(s)	969, 1067
BfaI	CTAG	8 cut(s)	431, 441, 666, 974, 1122, 1205, 1220, 1226
BfoI	RGCGCY	1 cut(s)	1060
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	3 cut(s)	242, 323, 1202
BlsI	GCNGC	3 cut(s)	243, 324, 1203
Bme1390I	CCNGG	2 cut(s)	969, 1067
Bme18I	GGWCC	2 cut(s)	11, 293
BmgT120I	GGNCC	2 cut(s)	11, 293
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	969, 1067
BpmI	CTGGAG	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	969, 1067
Bsa29I	ATCGAT	1 cut(s)	856
BsaJI	CCNNGG	2 cut(s)	967, 1066
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	1142
Bse1I	ACTGG	3 cut(s)	540, 853, 1136
Bse21I	CCTNAGG	1 cut(s)	399
BseCI	ATCGAT	1 cut(s)	856
BseDI	CCNNGG	2 cut(s)	967, 1066
BseGI	GGATG	3 cut(s)	110, 536, 926
BseLI	CCNNNNNNNGG	1 cut(s)	1142
BseNI	ACTGG	3 cut(s)	540, 853, 1136
BseRI	GAGGAG	3 cut(s)	386, 389, 392
BseXI	GCAGC	2 cut(s)	228, 1213
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	972
BshVI	ATCGAT	1 cut(s)	856
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	969, 1066
BslI	CCNNNNNNNGG	1 cut(s)	1142
BsmI	GAATGC	2 cut(s)	569, 688
BsnI	GGCC	1 cut(s)	972
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	721, 980
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	972
BspDI	ATCGAT	1 cut(s)	856
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	975
BsrI	ACTGG	3 cut(s)	540, 853, 1136
BssECI	CCNNGG	2 cut(s)	967, 1066
BssMI	GATC	2 cut(s)	721, 980
Bst4CI	ACNGT	1 cut(s)	1006
Bst6I	CTCTTC	5 cut(s)	1244, 1250, 1256, 1262, 1268
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	3 cut(s)	110, 536, 926
BstH2I	RGCGCY	1 cut(s)	1060
BstHHI	GCGC	1 cut(s)	1059
BstKTI	GATC	2 cut(s)	724, 983
BstMBI	GATC	2 cut(s)	721, 980
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	2 cut(s)	88, 511
BstSCI	CCNGG	2 cut(s)	967, 1065
BstV1I	GCAGC	2 cut(s)	228, 1213
Bsu15I	ATCGAT	1 cut(s)	856
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	972
BsuTUI	ATCGAT	1 cut(s)	856
BtsCI	GGATG	3 cut(s)	110, 536, 926
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	1059
Cfr13I	GGNCC	2 cut(s)	11, 293
ClaI	ATCGAT	1 cut(s)	856
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	3 cut(s)	408, 656, 878
CviJI	RGCY	5 cut(s)	241, 639, 669, 972, 1204
CviKI_1	RGCY	5 cut(s)	241, 639, 669, 972, 1204
CviQI	GTAC	3 cut(s)	408, 656, 878
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	723, 982
DpnII	GATC	2 cut(s)	721, 980
DrdI	GACNNNNNNGTC	1 cut(s)	508
DseDI	GACNNNNNNGTC	1 cut(s)	508
Eam1104I	CTCTTC	5 cut(s)	1244, 1250, 1256, 1262, 1268
EarI	CTCTTC	5 cut(s)	1244, 1250, 1256, 1262, 1268
Eco47I	GGWCC	2 cut(s)	11, 293
Eco81I	CCTNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	2 cut(s)	436, 922
EcoT22I	ATGCAT	1 cut(s)	869
FauNDI	CATATG	3 cut(s)	514, 730, 869
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	3 cut(s)	242, 323, 1202
FokI	GGATG	3 cut(s)	117, 523, 913
Fsp4HI	GCNGC	3 cut(s)	242, 323, 1202
FspBI	CTAG	8 cut(s)	431, 441, 666, 974, 1122, 1205, 1220, 1226
GlaI	GCGC	1 cut(s)	1058
GluI	GCNGC	3 cut(s)	242, 323, 1202
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	1060
HaeIII	GGCC	1 cut(s)	972
HapII	CCGG	2 cut(s)	969, 1066
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	1 cut(s)	1059
Hin6I	GCGC	1 cut(s)	1057
HinP1I	GCGC	1 cut(s)	1057
HinfI	GANTC	4 cut(s)	122, 252, 413, 1234
HpaII	CCGG	2 cut(s)	969, 1066
HphI	GGTGA	3 cut(s)	38, 104, 614
Hpy166II	GTNNAC	2 cut(s)	964, 1009
Hpy188I	TCNGA	5 cut(s)	127, 283, 921, 1233, 1239
Hpy188III	TCNNGA	3 cut(s)	441, 802, 1117
Hpy8I	GTNNAC	2 cut(s)	964, 1009
Hpy99I	CGWCG	1 cut(s)	790
HpyAV	CCTTC	2 cut(s)	359, 1182
HpyCH4III	ACNGT	1 cut(s)	1006
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	5 cut(s)	244, 360, 389, 395, 867
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	110
HspAI	GCGC	1 cut(s)	1057
Kzo9I	GATC	2 cut(s)	721, 980
LmnI	GCTCC	2 cut(s)	47, 57
LpnPI	CCDG	8 cut(s)	251, 405, 553, 644, 834, 982, 1079, 1149
Lsp1109I	GCAGC	2 cut(s)	228, 1213
MaeI	CTAG	8 cut(s)	431, 441, 666, 974, 1122, 1205, 1220, 1226
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	26, 661
MalI	GATC	2 cut(s)	723, 982
MboI	GATC	2 cut(s)	721, 980
MboII	GAAGA	7 cut(s)	889, 1258, 1261, 1267, 1273, 1279, 1285
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	99
MmeI	TCCRAC	2 cut(s)	188, 203
Mph1103I	ATGCAT	1 cut(s)	869
MseI	TTAA	8 cut(s)	132, 191, 266, 717, 807, 887, 914, 1020
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	969, 1066
MspR9I	CCNGG	2 cut(s)	969, 1067
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	2 cut(s)	569, 688
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	2 cut(s)	969, 1067
NdeI	CATATG	3 cut(s)	514, 730, 869
NdeII	GATC	2 cut(s)	721, 980
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	2 cut(s)	26, 661
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	2 cut(s)	88, 511
PagI	TCATGA	1 cut(s)	801
PaqCI	CACCTGC	1 cut(s)	400
PciI	ACATGT	1 cut(s)	507
PctI	GAATGC	2 cut(s)	569, 688
PfeI	GAWTC	4 cut(s)	122, 252, 413, 1234
PflMI	CCANNNNNTGG	1 cut(s)	1142
PkrI	GCNGC	3 cut(s)	243, 324, 1203
PpuMI	RGGWCCY	1 cut(s)	293
PscI	ACATGT	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	11, 293
PspPPI	RGGWCCY	1 cut(s)	293
PsrI	GAACNNNNNNTAC	2 cut(s)	969, 1001
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	3 cut(s)	409, 657, 879
RsaNI	GTAC	3 cut(s)	408, 656, 878
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	8 cut(s)	132, 191, 266, 717, 807, 887, 914, 1020
SatI	GCNGC	3 cut(s)	242, 323, 1202
Sau3AI	GATC	2 cut(s)	721, 980
Sau96I	GGNCC	2 cut(s)	11, 293
ScrFI	CCNGG	2 cut(s)	969, 1067
SduI	GDGCHC	1 cut(s)	99
SinI	GGWCC	2 cut(s)	11, 293
SmiMI	CAYNNNNRTG	1 cut(s)	425
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	8 cut(s)	431, 441, 666, 974, 1122, 1205, 1220, 1226
StyD4I	CCNGG	2 cut(s)	967, 1065
TaaI	ACNGT	1 cut(s)	1006
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	470, 856
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	4 cut(s)	122, 252, 413, 1234
Tru1I	TTAA	8 cut(s)	132, 191, 266, 717, 807, 887, 914, 1020
Tru9I	TTAA	8 cut(s)	132, 191, 266, 717, 807, 887, 914, 1020
TseFI	GTSAC	2 cut(s)	26, 661
TseI	GCWGC	2 cut(s)	241, 1201
Tsp45I	GTSAC	2 cut(s)	26, 661
TspDTI	ATGAA	7 cut(s)	541, 576, 717, 741, 790, 816, 915
Van91I	CCANNNNNTGG	1 cut(s)	1142
VpaK11BI	GGWCC	2 cut(s)	11, 293
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	5 cut(s)	436, 617, 922, 1049, 1240
XbaI	TCTAGA	1 cut(s)	440
XceI	RCATGY	2 cut(s)	88, 511
XmiI	GTMKAC	1 cut(s)	1008
XspI	CTAG	8 cut(s)	431, 441, 666, 974, 1122, 1205, 1220, 1226
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.