RchiOBHm_Chr2g0125131

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
38742517 .. 38750007
7491 bp
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UTR
Exon/CDS
Intron
PRQ49726

Sequence Viewer

Length: 162 bp
ATGGATGTGGTTTTGATCTTTGTTCCTTGCGTTCCACCCTTGTGTACCCTCAATCCCCGGATAGAACGATCCCTATTTGCTTATACTACTAACGACATTTCAGGGTTAAATTGCGCGCTTGCTTTGAGCGCATCAATTTTTGGCGCCGTTGCCGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.57

Weight (kDa)

4.41

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 1 cut(s) 116
AclWI GGATC 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 40
AlwI GGATC 1 cut(s) 63
AspLEI GCGC 4 cut(s) 116, 118, 131, 146
AsuC2I CCSGG 2 cut(s) 58, 154
BanI GGYRCC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 131
BcnI CCSGG 2 cut(s) 58, 154
BfoI RGCGCY 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 58, 154
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 58, 154
BmsI GCATC 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 58, 154
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 56, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 56, 153
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 153
BsePI GCGCGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 58, 153
BslI CCNNNNNNNGG 1 cut(s) 153
Bsp143I GATC 2 cut(s) 15, 68
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 56, 153
BssHII GCGCGC 1 cut(s) 114
BssMI GATC 2 cut(s) 15, 68
BssNI GRCGYC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 116, 120
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 4 cut(s) 116, 118, 131, 146
BstKTI GATC 2 cut(s) 18, 71
BstMBI GATC 2 cut(s) 15, 68
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 56, 152
BstUI CGCG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 116, 120
CfoI GCGC 4 cut(s) 116, 118, 131, 146
Csp6I GTAC 1 cut(s) 45
CviQI GTAC 1 cut(s) 45
DinI GGCGCC 1 cut(s) 145
DpnI GATC 2 cut(s) 17, 70
DpnII GATC 2 cut(s) 15, 68
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
FaiI YATR 1 cut(s) 84
FokI GGATG 1 cut(s) 17
GlaI GCGC 4 cut(s) 115, 117, 130, 145
HaeII RGCGCY 1 cut(s) 147
HapII CCGG 2 cut(s) 58, 153
HhaI GCGC 4 cut(s) 116, 118, 131, 146
Hin1I GRCGYC 1 cut(s) 144
Hin6I GCGC 4 cut(s) 114, 116, 129, 144
HinP1I GCGC 4 cut(s) 114, 116, 129, 144
HpaII CCGG 2 cut(s) 58, 153
Hpy166II GTNNAC 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 144
HspAI GCGC 4 cut(s) 114, 116, 129, 144
KasI GGCGCC 1 cut(s) 143
Kzo9I GATC 2 cut(s) 15, 68
LpnPI CCDG 2 cut(s) 71, 87
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 17, 70
MboI GATC 2 cut(s) 15, 68
MluCI AATT 2 cut(s) 109, 135
Mly113I GGCGCC 1 cut(s) 144
MnlI CCTC 1 cut(s) 59
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 40
MspI CCGG 2 cut(s) 58, 153
MspR9I CCNGG 2 cut(s) 58, 154
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 128
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 2 cut(s) 58, 154
NdeII GATC 2 cut(s) 15, 68
NlaIV GGNNCC 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 40
PauI GCGCGC 1 cut(s) 114
PluTI GGCGCC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 145
PteI GCGCGC 1 cut(s) 114
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 107
Sau3AI GATC 2 cut(s) 15, 68
ScrFI CCNGG 2 cut(s) 58, 154
SfaNI GCATC 1 cut(s) 140
SfoI GGCGCC 1 cut(s) 145
SgeI CNNG 7 cut(s) 39, 52, 69, 70, 114, 127, 131
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 2 cut(s) 109, 135
SspDI GGCGCC 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 56, 152
TasI AATT 2 cut(s) 109, 135
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.