Rroxscaffold_4G00303250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014829
Physical Location & Seq
Forward (+)
23648862 .. 23652395
3534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303250.1

Sequence Viewer

Length: 351 bp
ATGAAGCCTCCTAGCCGCCATCATCCACCTTGTGTCGTGAAGCTTTGGAGCCTTGCTTTCAAGATCCAAGACCAATGTCTCAAGCTTTCCACCATTCATCTTTCATGGTTTCTTGGGTTCGGGCCTTGTGCGGCGATCCATGGAGGGCTGGTGGCTTGTAGAGGATCCGGTGTGGATGATCCGTCGAGGACTGGTGGCTTGTATAGAATTTGGTGGGGCGACCTGTCCGATTTTAGCCGGGGCTTTTGGACCGAGACCCTTTTGCCAATGGTGGGAGTGTTGTTGCAGAGGGAGACGAGCTCTAGTGTAGGGCGATGTGTAAGTGGTCATCGGATGACGTATTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

9.44

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 16, 131
AclWI GGATC 5 cut(s) 58, 130, 159, 172, 173
AcsI RAATTY 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 3 cut(s) 43, 85, 300
AluI AGCT 3 cut(s) 43, 85, 300
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 3 cut(s) 83, 248, 287
AlwI GGATC 5 cut(s) 58, 130, 159, 172, 173
AoxI GGCC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 122, 249
AsuC2I CCSGG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 249
BamHI GGATCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 302
BccI CCATC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 83, 248, 287
BfaI CTAG 2 cut(s) 12, 303
BisI GCNGC 2 cut(s) 16, 132
BlsI GCNGC 2 cut(s) 17, 133
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 122, 249
BmiI GGNNCC 2 cut(s) 50, 166
BmrFI CCNGG 1 cut(s) 239
BoxI GACNNNNGTC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 139, 238
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 139, 238
BseGI GGATG 3 cut(s) 22, 181, 339
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 196
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 168, 238
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 3 cut(s) 83, 248, 287
BsmBI CGTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 4 cut(s) 63, 135, 164, 178
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 2 cut(s) 16, 131
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 50, 166
BspPI GGATC 5 cut(s) 58, 130, 159, 172, 173
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 139, 238
BssMI GATC 4 cut(s) 63, 135, 164, 178
BssT1I CCWWGG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 3 cut(s) 22, 181, 339
BstKTI GATC 4 cut(s) 66, 138, 167, 181
BstMAI GTCTC 3 cut(s) 83, 248, 287
BstMBI GATC 4 cut(s) 63, 135, 164, 178
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 63, 164
BstYI RGATCY 2 cut(s) 63, 164
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 3 cut(s) 22, 181, 339
Cfr13I GGNCC 2 cut(s) 122, 249
CviAII CATG 2 cut(s) 105, 140
DpnI GATC 4 cut(s) 65, 137, 166, 180
DpnII GATC 4 cut(s) 63, 135, 164, 178
DraIII CACNNNGTG 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 2 cut(s) 108, 143
FaiI YATR 3 cut(s) 106, 141, 204
FatI CATG 2 cut(s) 104, 139
Fnu4HI GCNGC 2 cut(s) 16, 132
FokI GGATG 3 cut(s) 9, 188, 346
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 16, 132
FspBI CTAG 2 cut(s) 12, 303
GluI GCNGC 2 cut(s) 16, 132
HaeIII GGCC 1 cut(s) 124
HapII CCGG 2 cut(s) 168, 238
Hin1II CATG 2 cut(s) 108, 143
HindIII AAGCTT 2 cut(s) 41, 83
HpaII CCGG 2 cut(s) 168, 238
Hpy188I TCNGA 2 cut(s) 229, 333
Hpy188III TCNNGA 2 cut(s) 37, 61
Hpy99I CGWCG 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 2 cut(s) 108, 143
Kzo9I GATC 4 cut(s) 63, 135, 164, 178
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 5 cut(s) 134, 177, 181, 236, 251
MaeI CTAG 2 cut(s) 12, 303
MaeII ACGT 1 cut(s) 338
MalI GATC 4 cut(s) 65, 137, 166, 180
MboI GATC 4 cut(s) 63, 135, 164, 178
MflI RGATCY 2 cut(s) 63, 164
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 1 cut(s) 207
MnlI CCTC 5 cut(s) 18, 137, 155, 180, 282
MspI CCGG 2 cut(s) 168, 238
MspR9I CCNGG 1 cut(s) 239
NciI CCSGG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 139
NdeII GATC 4 cut(s) 63, 135, 164, 178
NlaIII CATG 2 cut(s) 108, 143
NlaIV GGNNCC 2 cut(s) 50, 166
PkrI GCNGC 2 cut(s) 17, 133
PshAI GACNNNNGTC 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 50, 166
PspPI GGNCC 2 cut(s) 122, 249
PsuI RGATCY 2 cut(s) 63, 164
SacI GAGCTC 1 cut(s) 302
SatI GCNGC 2 cut(s) 16, 132
Sau3AI GATC 4 cut(s) 63, 135, 164, 178
Sau96I GGNCC 2 cut(s) 122, 249
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 302
SetI ASST 6 cut(s) 31, 45, 87, 225, 302, 341
SinI GGWCC 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 207
SsiI CCGC 2 cut(s) 16, 131
SspMI CTAG 2 cut(s) 12, 303
SstI GAGCTC 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 139
TaiI ACGT 1 cut(s) 341
TaqI TCGA 1 cut(s) 185
TaqII GACCGA 1 cut(s) 266
TasI AATT 1 cut(s) 207
TauI GCSGC 2 cut(s) 18, 134
TspDTI ATGAA 3 cut(s) 17, 86, 93
TspGWI ACGGA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 207
XspI CTAG 2 cut(s) 12, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.