RchiOBHm_Chr4g0424181

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
49737419 .. 49737796
378 bp
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UTR
Exon/CDS
Intron
PRQ39348

Sequence Viewer

Length: 177 bp
ATGACAGGTGTACCCTCAATCCCCGGAATAGAACGATCCCTACTTGCTTATACTACTATGATATTTTTAGGGTTAAATTGTGCGCTTGCTTTTAGCTGCATCAAATTCATTATCTCATTAGTTCAAAACATTCACCAAATCAAAGTAATACGTATAACAAACCAAGTAGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.39

Weight (kDa)

9.38

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
AlwI GGATC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 125
BaeI ACNNNNGTAYC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 83
BcnI CCSGG 1 cut(s) 24
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 24
Bsp143I GATC 1 cut(s) 35
BspPI GGATC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 35
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 87
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 38
BstMBI GATC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 22
BstSNI TACGTA 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 11
CviJI RGCY 1 cut(s) 96
CviKI_1 RGCY 1 cut(s) 96
CviQI GTAC 1 cut(s) 11
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eco105I TACGTA 1 cut(s) 152
FaiI YATR 3 cut(s) 51, 59, 155
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 97
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 151
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 35
LpnPI CCDG 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 151
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MluCI AATT 2 cut(s) 76, 104
MnlI CCTC 1 cut(s) 25
MseI TTAA 1 cut(s) 74
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 24
NciI CCSGG 1 cut(s) 24
NdeII GATC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 152
PsrI GAACNNNNNNTAC 2 cut(s) 24, 56
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 24
SetI ASST 3 cut(s) 10, 98, 154
SfaNI GCATC 1 cut(s) 108
SgeI CNNG 5 cut(s) 18, 35, 36, 56, 98
SnaBI TACGTA 1 cut(s) 152
Sse9I AATT 2 cut(s) 76, 104
StyD4I CCNGG 1 cut(s) 22
TaiI ACGT 1 cut(s) 154
TasI AATT 2 cut(s) 76, 104
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 97
XapI RAATTY 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.