RchiOBHm_Chr1g0329021

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
18472342 .. 18472689
348 bp
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UTR
Exon/CDS
Intron
PRQ55837

Sequence Viewer

Length: 180 bp
ATGAAGCCTCCTAGCCGCCTTCATCTACCTTGTGTCGTGAAGCTTTGGAGCCTTGCTTTCAAGATCCAAGACCAACGTCTCAAGCTTTCCACCATTCATCCTTCATGGTGTAATTCTATCTTATTCCTTGTAACCTTTTTGGTTTTCTTTGTTTTGATTTCGTATGAACTTGATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.98

Weight (kDa)

9.24

Isoelectric Point (pI)

23.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 58
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 43, 85
AluI AGCT 2 cut(s) 43, 85
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 2 cut(s) 12, 178
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 50
BoxI GACNNNNGTC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 65
BseGI GGATG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 58
BssMI GATC 1 cut(s) 63
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtsCI GGATG 1 cut(s) 97
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 7, 15, 43, 51, 85
CviKI_1 RGCY 5 cut(s) 7, 15, 43, 51, 85
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 108
FaiI YATR 2 cut(s) 106, 165
FatI CATG 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 2 cut(s) 12, 178
GluI GCNGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 108
HindIII AAGCTT 2 cut(s) 41, 83
Hpy188III TCNNGA 2 cut(s) 37, 61
HpyAV CCTTC 2 cut(s) 29, 111
HpyCH4IV ACGT 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 48
MaeI CTAG 2 cut(s) 12, 178
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MflI RGATCY 1 cut(s) 63
MluCI AATT 1 cut(s) 112
MnlI CCTC 1 cut(s) 18
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 17
PshAI GACNNNNGTC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 63
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 63
SetI ASST 5 cut(s) 31, 45, 79, 87, 137
SgeI CNNG 9 cut(s) 24, 42, 49, 65, 73, 80, 94, 117, 140
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 16
SspMI CTAG 2 cut(s) 12, 178
TaiI ACGT 1 cut(s) 79
TasI AATT 1 cut(s) 112
TauI GCSGC 1 cut(s) 18
TspDTI ATGAA 5 cut(s) 11, 17, 86, 93, 180
XspI CTAG 2 cut(s) 12, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.