RchiOBHm_Chr2g0125561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
39336758 .. 39337605
848 bp
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UTR
Exon/CDS
Intron
PRQ49765

Sequence Viewer

Length: 165 bp
ATGAAGCCTCCTAGCCATCATCATCCACCTTGTGCCGTGATAGTGAAGTCTTGCTTTAAAGATTCAAGATCAATGTTTCAAGCTCTTCATCATCCACTCCCTTCATGGTGTAATTCTATCTTTTTCCTTGTAATTTCTTTTGGTTTTCTTTGTTTAGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.17

Weight (kDa)

8.5

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 66, 80
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
BccI CCATC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 20
BfaI CTAG 1 cut(s) 12
BseGI GGATG 2 cut(s) 22, 91
Bsp143I GATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 90
BssMI GATC 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 22, 91
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 22, 91
CviAII CATG 1 cut(s) 105
CviJI RGCY 3 cut(s) 7, 15, 83
CviKI_1 RGCY 3 cut(s) 7, 15, 83
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DraI TTTAAA 1 cut(s) 58
DraIII CACNNNGTG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
FaeI CATG 1 cut(s) 108
FaiI YATR 1 cut(s) 106
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 1 cut(s) 104
FokI GGATG 2 cut(s) 9, 78
FspBI CTAG 1 cut(s) 12
Hin1II CATG 1 cut(s) 108
HinfI GANTC 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 68
LguI GCTCTTC 1 cut(s) 90
MaeI CTAG 1 cut(s) 12
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 77
MluCI AATT 2 cut(s) 112, 132
MnlI CCTC 1 cut(s) 18
MseI TTAA 1 cut(s) 57
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 68
SetI ASST 2 cut(s) 31, 85
SgeI CNNG 8 cut(s) 24, 42, 49, 63, 78, 92, 117, 140
Sse9I AATT 2 cut(s) 112, 132
SspMI CTAG 1 cut(s) 12
TasI AATT 2 cut(s) 112, 132
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 17, 77, 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.