RchiOBHm_Chr1g0364761

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
55831396 .. 55833536
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58944

Sequence Viewer

Length: 321 bp
ATGCGAGAAGAAGAAGCCATGAAGCCTCCTAGCCGTCATCATCCACCTTGTGCCGTGATAGTGAAGTCTTGCTTTAAAGATTCAAGATCAATGTCTCAAGCTCTTCATCATCCACTCCCTTCATGGTGTGTACCCTCAATCCCCGGAATAGAACGATCCCTATTTACTTATACTACTAACGATATTTTCAGGGTTAAATTGCGCGCTTGCTTTTTAGCGCATCAAGATGAGAATTACTACCTGCATACATTTTACAGTGTTTATAGCAACAGTGATTATAAGTCTAATTACATATCATGTAAGAAATTAGTTAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.39

Weight (kDa)

9.03

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 249
AccII CGCG 1 cut(s) 204
AclWI GGATC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 132
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 150
AspLEI GCGC 3 cut(s) 204, 206, 220
AsuC2I CCSGG 1 cut(s) 144
BceAI ACGGC 2 cut(s) 18, 38
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 40, 109
BsePI GCGCGC 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 86, 155
BspFNI CGCG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 142
BssHII GCGCGC 1 cut(s) 202
BssMI GATC 2 cut(s) 86, 155
Bst4CI ACNGT 2 cut(s) 257, 272
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 204, 208
BstF5I GGATG 2 cut(s) 40, 109
BstFNI CGCG 1 cut(s) 204
BstHHI GCGC 3 cut(s) 204, 206, 220
BstKTI GATC 2 cut(s) 89, 158
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 86, 155
BstSCI CCNGG 1 cut(s) 142
BstUI CGCG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 40, 109
BtsIMutI CAGTG 2 cut(s) 262, 277
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 204, 208
CfoI GCGC 3 cut(s) 204, 206, 220
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 19, 123, 297
CviJI RGCY 4 cut(s) 17, 25, 33, 101
CviKI_1 RGCY 4 cut(s) 17, 25, 33, 101
CviQI GTAC 1 cut(s) 131
DpnI GATC 2 cut(s) 88, 157
DpnII GATC 2 cut(s) 86, 155
DraI TTTAAA 1 cut(s) 76
DraIII CACNNNGTG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
FaeI CATG 3 cut(s) 22, 126, 300
FaiI YATR 8 cut(s) 20, 124, 171, 246, 264, 279, 293, 298
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 3 cut(s) 18, 122, 296
FokI GGATG 2 cut(s) 27, 96
FspBI CTAG 1 cut(s) 30
GlaI GCGC 3 cut(s) 203, 205, 219
HapII CCGG 1 cut(s) 144
HhaI GCGC 3 cut(s) 204, 206, 220
Hin1II CATG 3 cut(s) 22, 126, 300
Hin6I GCGC 3 cut(s) 202, 204, 218
HinP1I GCGC 3 cut(s) 202, 204, 218
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 84, 224
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 2 cut(s) 257, 272
HpyCH4V TGCA 1 cut(s) 244
Hsp92II CATG 3 cut(s) 22, 126, 300
HspAI GCGC 3 cut(s) 202, 204, 218
Kzo9I GATC 2 cut(s) 86, 155
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 157, 175, 254
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 30
MalI GATC 2 cut(s) 88, 157
MboI GATC 2 cut(s) 86, 155
MboII GAAGA 3 cut(s) 20, 23, 95
MluCI AATT 5 cut(s) 197, 232, 286, 305, 316
MnlI CCTC 2 cut(s) 36, 145
MseI TTAA 4 cut(s) 75, 195, 312, 319
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 204
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 86, 155
NlaIII CATG 3 cut(s) 22, 126, 300
PauI GCGCGC 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 80
PsiI TTATAA 1 cut(s) 279
PteI GCGCGC 1 cut(s) 202
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 75, 195, 312, 319
Sau3AI GATC 2 cut(s) 86, 155
ScrFI CCNGG 1 cut(s) 144
SetI ASST 3 cut(s) 49, 103, 243
SfaNI GCATC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 5 cut(s) 197, 232, 286, 305, 316
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 257, 272
TasI AATT 5 cut(s) 197, 232, 286, 305, 316
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 4 cut(s) 75, 195, 312, 319
Tru9I TTAA 4 cut(s) 75, 195, 312, 319
TscAI CASTG 2 cut(s) 262, 277
TspDTI ATGAA 3 cut(s) 35, 95, 111
TspRI CASTG 2 cut(s) 262, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.