RchiOBHm_Chr2g0157431

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
73805339 .. 73807852
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52616

Sequence Viewer

Length: 336 bp
ATGATATTTGAGGTCATTAGGCAAAGGCTTCGCATCGTTGACGTCCGAAAGTGTATCCCTCCCTCCATAGCCGAGGAAAAGAGGAATGTCTTTCGGAATGTTTGCCATGTTGTACAGAAAATTCTAGTAGAAGAAGAAGCCATGAAGCCTCCTAGCCGTCATCATCCACCTTGTGCCGTGATAGTGAAGTCTTGCTTTAAAGATTCAAGATCAATGTCTCAAGCTCTTCATCATCCACTCCCTTCATGGTGTGTACCCTCAATCCCCGGAATAGAACGATCCCTATTTGCTTATACTACTAACGATATTTCAGGGTTAAATTATGCGCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.65

Weight (kDa)

9.17

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 45
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 2 cut(s) 114, 255
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 267
BceAI ACGGC 2 cut(s) 141, 161
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciVI GTATCC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 125, 153
BfuI GTATCC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 72, 265
BseDI CCNNGG 2 cut(s) 72, 265
BseGI GGATG 2 cut(s) 163, 232
BsiSI CCGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 209, 278
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 72, 265
BssMI GATC 2 cut(s) 209, 278
BssNI GRCGYC 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 330
BstF5I GGATG 2 cut(s) 163, 232
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 212, 281
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 209, 278
BstSCI CCNGG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 163, 232
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 113, 254
CviAII CATG 3 cut(s) 107, 142, 246
CviJI RGCY 6 cut(s) 28, 71, 140, 148, 156, 224
CviKI_1 RGCY 6 cut(s) 28, 71, 140, 148, 156, 224
CviQI GTAC 2 cut(s) 113, 254
DpnI GATC 2 cut(s) 211, 280
DpnII GATC 2 cut(s) 209, 278
DraI TTTAAA 1 cut(s) 199
DraIII CACNNNGTG 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
FaeI CATG 3 cut(s) 110, 145, 249
FaiI YATR 6 cut(s) 68, 108, 143, 247, 294, 324
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 3 cut(s) 106, 141, 245
FokI GGATG 2 cut(s) 150, 219
FspBI CTAG 2 cut(s) 125, 153
GlaI GCGC 1 cut(s) 327
HapII CCGG 1 cut(s) 267
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 110, 145, 249
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 267
Hpy166II GTNNAC 2 cut(s) 40, 254
Hpy188I TCNGA 2 cut(s) 47, 96
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 2 cut(s) 40, 254
HpyAV CCTTC 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 110, 145, 249
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 209, 278
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 280, 297
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 125, 153
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 211, 280
MboI GATC 2 cut(s) 209, 278
MboII GAAGA 3 cut(s) 143, 146, 218
MluCI AATT 2 cut(s) 120, 319
MnlI CCTC 7 cut(s) 4, 67, 69, 73, 75, 159, 268
MseI TTAA 3 cut(s) 198, 317, 334
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 267
NciI CCSGG 1 cut(s) 267
NdeII GATC 2 cut(s) 209, 278
NlaIII CATG 3 cut(s) 110, 145, 249
NmeAIII GCCGAG 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 114, 255
RsaNI GTAC 2 cut(s) 113, 254
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 198, 317, 334
Sau3AI GATC 2 cut(s) 209, 278
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 15, 45, 172, 226
SfaNI GCATC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 2 cut(s) 120, 319
SspMI CTAG 2 cut(s) 125, 153
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 1 cut(s) 45
TasI AATT 2 cut(s) 120, 319
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 198, 317, 334
Tru9I TTAA 3 cut(s) 198, 317, 334
TspDTI ATGAA 3 cut(s) 158, 218, 234
XapI RAATTY 1 cut(s) 120
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XspI CTAG 2 cut(s) 125, 153
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.