RchiOBHm_Chr7g0181031

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
2739936 .. 2748346
8411 bp
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UTR
Exon/CDS
Intron
PRQ16146

Sequence Viewer

Length: 369 bp
ATGAAGCCTCCTAGCCGTCATCATCCACCTTGTGCCGTGATAGTGAAGTCTTGCTTTAAAGATTCAAGATCAACGTCTCAAGCTCTTCATCATCCACTCCCTTCATGGTGGTTAAATTGCGCGCTTGCTTTCGAGCGCATCACTCACCCAAAAAGAAAAGCTGAGAGAAAGAGTCCTTCTATCAAGTGCTTCACGCCTTCATGTACAGATATCATATATGCTGATATAAAAACACTGAGAGATCCTGATATAGAAATAGGTAGCTACTCTAATTTTAGTCTCGTGAGCTGTAAATTAAGATTTTTATCTTTATACTGTTTTCTCGTTGATATATTCGATGATATTTTATGTATTTTCAGATACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.14

Weight (kDa)

8.98

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AclWI GGATC 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 32
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 1 cut(s) 66
AluBI AGCT 4 cut(s) 83, 161, 264, 288
AluI AGCT 4 cut(s) 83, 161, 264, 288
Alw26I GTCTC 2 cut(s) 81, 284
AlwI GGATC 1 cut(s) 236
AspLEI GCGC 3 cut(s) 122, 124, 138
AsuHPI GGTGA 1 cut(s) 137
BauI CACGAG 1 cut(s) 281
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 81, 284
BfaI CTAG 1 cut(s) 12
BmsI GCATC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 304
BseGI GGATG 2 cut(s) 22, 91
BseJI GATNNNNATC 1 cut(s) 304
BseMII CTCAG 2 cut(s) 153, 227
BsePI GCGCGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 81, 284
BsmBI CGTCTC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 203
Bsp143I GATC 2 cut(s) 68, 241
BspCNI CTCAG 2 cut(s) 154, 228
BspFNI CGCG 1 cut(s) 122
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 203
BssHII GCGCGC 1 cut(s) 120
BssMI GATC 2 cut(s) 68, 241
BssSI CACGAG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 122, 126
BstDEI CTNAG 2 cut(s) 162, 236
BstF5I GGATG 2 cut(s) 22, 91
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 3 cut(s) 122, 124, 138
BstKTI GATC 2 cut(s) 71, 244
BstMAI GTCTC 2 cut(s) 81, 284
BstMBI GATC 2 cut(s) 68, 241
BstUI CGCG 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtsCI GGATG 2 cut(s) 22, 91
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 122, 126
CfoI GCGC 3 cut(s) 122, 124, 138
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 105, 201
CviJI RGCY 6 cut(s) 7, 15, 83, 161, 264, 288
CviKI_1 RGCY 6 cut(s) 7, 15, 83, 161, 264, 288
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 2 cut(s) 162, 236
DpnI GATC 2 cut(s) 70, 243
DpnII GATC 2 cut(s) 68, 241
DraI TTTAAA 1 cut(s) 58
DraIII CACNNNGTG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 211
EcoRV GATATC 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 2 cut(s) 108, 204
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 2 cut(s) 104, 200
FokI GGATG 2 cut(s) 9, 78
FspBI CTAG 1 cut(s) 12
GlaI GCGC 3 cut(s) 121, 123, 137
HhaI GCGC 3 cut(s) 122, 124, 138
Hin1II CATG 2 cut(s) 108, 204
Hin6I GCGC 3 cut(s) 120, 122, 136
HinP1I GCGC 3 cut(s) 120, 122, 136
HinfI GANTC 2 cut(s) 62, 172
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 3 cut(s) 66, 245, 283
HpyAV CCTTC 3 cut(s) 111, 186, 207
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 162, 236
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 2 cut(s) 108, 204
HspAI GCGC 3 cut(s) 120, 122, 136
Kzo9I GATC 2 cut(s) 68, 241
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 1 cut(s) 258
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 74
MalI GATC 2 cut(s) 70, 243
MboI GATC 2 cut(s) 68, 241
MboII GAAGA 1 cut(s) 77
MflI RGATCY 1 cut(s) 241
MluCI AATT 3 cut(s) 115, 271, 293
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 1 cut(s) 18
MseI TTAA 3 cut(s) 57, 113, 296
MvnI CGCG 1 cut(s) 122
NdeII GATC 2 cut(s) 68, 241
NlaIII CATG 2 cut(s) 108, 204
PauI GCGCGC 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 62
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 241
PteI GCGCGC 1 cut(s) 120
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 3 cut(s) 57, 113, 296
Sau3AI GATC 2 cut(s) 68, 241
SchI GAGTC 1 cut(s) 181
SetI ASST 7 cut(s) 31, 77, 85, 163, 262, 266, 290
SfaNI GCATC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 3 cut(s) 115, 271, 293
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 132, 336
TasI AATT 3 cut(s) 115, 271, 293
TatI WGTACW 1 cut(s) 203
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 57, 113, 296
Tru9I TTAA 3 cut(s) 57, 113, 296
TscAI CASTG 1 cut(s) 240
TspDTI ATGAA 4 cut(s) 17, 77, 93, 189
TspRI CASTG 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.