RchiOBHm_Chr1g0342521

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
34391422 .. 34392347
926 bp
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UTR
Exon/CDS
Intron
PRQ56914

Sequence Viewer

Length: 159 bp
ATGAAGCCTCCTAGCCGCCATCATCCACCTTGTGTCGTGAAGCTTTGGAGCCTTGCTTTCAAGATCCAAGACCAACGTCTCAAGCTTTCCACCATTCATCCTTCATGGTGTGTACCCTCAATCCCCGGAATAGAACGATCCCTATTTACTATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

6.04

Weight (kDa)

9.9

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 58, 132
AdeI CACNNNGTG 1 cut(s) 32
AfaI GTAC 1 cut(s) 114
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 43, 85
AluI AGCT 2 cut(s) 43, 85
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 58, 132
AsuC2I CCSGG 1 cut(s) 126
BccI CCATC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 12
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 126
BoxI GACNNNNGTC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 2 cut(s) 22, 97
BsiSI CCGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 63, 137
BspACI CCGC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 2 cut(s) 58, 132
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 63, 137
BstF5I GGATG 2 cut(s) 22, 97
BstKTI GATC 2 cut(s) 66, 140
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 63, 137
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtsCI GGATG 2 cut(s) 22, 97
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 7, 15, 43, 51, 85
CviKI_1 RGCY 5 cut(s) 7, 15, 43, 51, 85
CviQI GTAC 1 cut(s) 113
DpnI GATC 2 cut(s) 65, 139
DpnII GATC 2 cut(s) 63, 137
DraIII CACNNNGTG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 108
FaiI YATR 3 cut(s) 106, 152, 154
FatI CATG 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 2 cut(s) 9, 84
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 16
HapII CCGG 1 cut(s) 126
Hin1II CATG 1 cut(s) 108
HindIII AAGCTT 2 cut(s) 41, 83
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 37, 61
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 2 cut(s) 63, 137
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 1 cut(s) 139
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 76
MalI GATC 2 cut(s) 65, 139
MboI GATC 2 cut(s) 63, 137
MflI RGATCY 1 cut(s) 63
MnlI CCTC 2 cut(s) 18, 127
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 126
NciI CCSGG 1 cut(s) 126
NdeII GATC 2 cut(s) 63, 137
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 17
PshAI GACNNNNGTC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 63, 137
ScrFI CCNGG 1 cut(s) 126
SetI ASST 4 cut(s) 31, 45, 79, 87
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 79
TauI GCSGC 1 cut(s) 18
TspDTI ATGAA 3 cut(s) 17, 86, 93
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.