RchiOBHm_Chr7g0180001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014829
Physical Location & Seq
Reverse (-)
2084563 .. 2087133
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16047

Sequence Viewer

Length: 252 bp
ATGAAGCCTCCTAGCCGTCATCATCCACCTTGTGCCGTGATAGTGAAGTCTTACTTTAAAGATTCAAGATCAACGTCTCAAGCTCTTCATCATCCACTCCCTTCATGGTGGTTAAATTATGCGCTTGCTTTTAGCGCATCAATGAATAGGCCATGCGCCCCTACCTGGATATTCATGAGTGCTCTAGAAAACTTGCCTAAGTTTCATAGGAAGCGGCCCCACTTCCACACTCATATAGGTACATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.65

Weight (kDa)

10.14

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 32
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 1 cut(s) 66
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 2 cut(s) 149, 215
AspLEI GCGC 3 cut(s) 124, 137, 158
AspS9I GGNCC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 12, 185
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 22, 91
BseLI CCNNNNNNNGG 1 cut(s) 165
BshFI GGCC 2 cut(s) 151, 217
BsiHKAI GWGCWC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 2 cut(s) 151, 217
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 151, 217
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 90
BssMI GATC 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 22, 91
BstHHI GCGC 3 cut(s) 124, 137, 158
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BsuRI GGCC 2 cut(s) 151, 217
BtsCI GGATG 2 cut(s) 22, 91
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 174
CfoI GCGC 3 cut(s) 124, 137, 158
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 105, 153, 175
CviJI RGCY 5 cut(s) 7, 15, 83, 151, 217
CviKI_1 RGCY 5 cut(s) 7, 15, 83, 151, 217
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DraI TTTAAA 1 cut(s) 58
DraIII CACNNNGTG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 108, 156, 178
FaiI YATR 7 cut(s) 106, 120, 154, 176, 207, 234, 236
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 3 cut(s) 104, 152, 174
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 2 cut(s) 9, 78
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 12, 185
GlaI GCGC 3 cut(s) 123, 136, 157
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 151, 217
HhaI GCGC 3 cut(s) 124, 137, 158
Hin1II CATG 3 cut(s) 108, 156, 178
Hin6I GCGC 3 cut(s) 122, 135, 156
HinP1I GCGC 3 cut(s) 122, 135, 156
HinfI GANTC 1 cut(s) 62
Hpy188III TCNNGA 3 cut(s) 66, 175, 185
HpyAV CCTTC 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 3 cut(s) 108, 156, 178
HspAI GCGC 3 cut(s) 122, 135, 156
Kzo9I GATC 1 cut(s) 68
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 2 cut(s) 151, 178
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 12, 185
MaeII ACGT 1 cut(s) 74
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 1 cut(s) 115
MnlI CCTC 1 cut(s) 18
MseI TTAA 2 cut(s) 57, 113
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 68
NlaIII CATG 3 cut(s) 108, 156, 178
NlaIV GGNNCC 1 cut(s) 218
PagI TCATGA 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 57, 113
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 184
SetI ASST 5 cut(s) 31, 77, 85, 167, 241
SfaNI GCATC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 214
SspMI CTAG 2 cut(s) 12, 185
StyD4I CCNGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 77
TasI AATT 1 cut(s) 115
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 57, 113
Tru9I TTAA 2 cut(s) 57, 113
TspDTI ATGAA 6 cut(s) 17, 77, 93, 158, 163, 194
XbaI TCTAGA 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XspI CTAG 2 cut(s) 12, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.