RchiOBHm_Chr4g0401921

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
20349133 .. 20349452
320 bp
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UTR
Exon/CDS
Intron
PRQ37381

Sequence Viewer

Length: 174 bp
ATGAAGCCTCCTAGCCGTCATCATCCACCTTGTGCCGTGATAGTGAAGTCTTGCTTTCAAGATTCAAGATCAACGTCTCAAGCTTTTCATCATCCACTCCCTTCATGGTGTAATTCTATCTTTTTCCTTGTAATTTCTTTTGGTTTTATTTTTTTTTGGATTTCCAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.61

Weight (kDa)

9.5

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 59, 66
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 63
BseGI GGATG 2 cut(s) 22, 91
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 68
BssMI GATC 1 cut(s) 68
BstF5I GGATG 2 cut(s) 22, 91
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 22, 91
CviAII CATG 1 cut(s) 105
CviJI RGCY 3 cut(s) 7, 15, 83
CviKI_1 RGCY 3 cut(s) 7, 15, 83
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DraIII CACNNNGTG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 108
FaiI YATR 2 cut(s) 106, 172
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 1 cut(s) 104
FokI GGATG 2 cut(s) 9, 78
FspBI CTAG 1 cut(s) 12
Hin1II CATG 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 59, 66
HpyAV CCTTC 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 74
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MluCI AATT 2 cut(s) 112, 132
MnlI CCTC 1 cut(s) 18
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 108
PfeI GAWTC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 68
SetI ASST 3 cut(s) 31, 77, 85
SgeI CNNG 9 cut(s) 24, 42, 49, 63, 71, 78, 92, 117, 140
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 2 cut(s) 112, 132
SspMI CTAG 1 cut(s) 12
TaiI ACGT 1 cut(s) 77
TasI AATT 2 cut(s) 112, 132
TfiI GAWTC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 17, 77, 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.