Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009758

Physical Location & Seq

Genomic Coordinates Reverse (-)

8478709 .. 8480406

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAATATGTAACCGTTGCAAGTTGGGGAGCTTACCTTTTGTCCAGGGACATTCTAACAGTGTCATTTGCACCAAGAGACACACATGAAGCGCAAGTTCAATTTGCTCTTGAAAGAGGAGTTCCTGCATTGATTGGCATTCTTGCTTCCAAAAGACTTCCTTACCCCTCAAGAGCTTTTGACATGGCTCACTGCTCTCGATGCCTCATCCCCTGGGGCCAATATGGTAAATTCACCGATTTTGATCATGCAGATGGACTTTACTTGATCGAAGTTGATCGAGTTTTACGCCCCGGTGGGTACTGGATTCTTTCCGGGCCACCAATAAACTGGGAGAATCACTGGAAAGGATGGGAAAGAACAGCTGAAGATCTTAAAGCTGAGCAGACAACGATTGAGAATGTAGCAAAAAGCTTATGTTGGAAGAAACTGAAGCAAAAGGGTGACCTTGCAATTTGGCAAAAACCCACCAACCATGTTCACTGTAAGGTCACCAGAAAGCTCTTCAAGAAACCATCCTTCTGCCAAGCTCAAGATCCTGACACTGCATGGTATACGAAAATGGAGGATTGTTTAACCCCACTTCCCGGAGTGAACAACATAAAAGAAATTGCAGGAGGGCAATTGGCTAAATGGCCAGAGAGGCTAAACACAGTCCCTCCAAGAATCAGCAGTGGGAGGCTGACAGGAATCACAGCTGAGAGCTTCAGAGAAAACACAGAGCTATGGAAGAAAAGAGTAGAATATTACAAGACCGTGGATTATCAGTTGGCAGAGCCCGGGAGGTACCGGAATCTGCTCGATATGAACGCTTACTTGGGCGGCTTTGCAGCTGTACTTGTTCATGACCCTGTGTGGGTTATGAACATTGTCCCTGTTGAGGCTGAGGTTAACACCCTTGGAGCCATTTATGAACGAGGATTGATTGGAACTTATCAGAATTGGTATGCTCTTTCCCCCATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

323

Amino Acids

36.78

Weight (kDa)

8.4

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45750 AT4G00750
fragaria_vesca	FvH4_7g13290
malus_domestica	MD01G1050600.v1.1 MD07G1127900.v1.1
prunus_persica	Prupe.2G156500_v2.0.a1
pyrus_communis	pycom01g07540 pycom01g07550 pycom07g12340
rosa_chinensis	RchiOBHm_Chr1g0352551
rosa_laevigata	RLG00000028331
rosa_multiflora	Rmu_co8293159.1_g000001 Rmu_sc0000911.1_g000032
rosa_roxburghii	Rroxscaffold_4G00302640
rosa_rugosa	Rorug01G0230000
rosa_samantha	Rh1AG243500 Rh1BG214100 Rh1CG227000 Rh1DG240100
rosa_wichuraiana	Rw1G021280 Rw1G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	1 cut(s)	822
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	3 cut(s)	387, 452, 691
AfaI	GTAC	3 cut(s)	302, 788, 837
AfiI	CCNNNNNNNGG	3 cut(s)	587, 856, 880
AgsI	TTSAA	3 cut(s)	101, 113, 508
AjnI	CCWGG	2 cut(s)	44, 212
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	3 cut(s)	217, 317, 635
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	1 cut(s)	230
Asp718I	GGTACC	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	217, 317
AsuC2I	CCSGG	5 cut(s)	294, 316, 588, 780, 781
AsuHPI	GGTGA	3 cut(s)	226, 455, 484
AvaI	CYCGRG	1 cut(s)	779
BalI	TGGCCA	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	3 cut(s)	248, 345, 523
BciT130I	CCWGG	2 cut(s)	46, 214
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	5 cut(s)	294, 316, 588, 780, 781
BcoDI	GTCTC	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	2 cut(s)	823, 831
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	2 cut(s)	824, 832
Bme1390I	CCNGG	7 cut(s)	46, 214, 294, 316, 588, 780, 781
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	217, 317
BmiI	GGNNCC	3 cut(s)	218, 788, 904
BmrFI	CCNGG	7 cut(s)	46, 214, 294, 316, 588, 780, 781
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	154, 516
BpuMI	CCSGG	5 cut(s)	294, 316, 588, 780, 781
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	7 cut(s)	45, 212, 213, 292, 756, 779, 898
BsaWI	WCCGGW	1 cut(s)	789
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	587, 856, 880
Bse1I	ACTGG	3 cut(s)	308, 335, 347
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	46, 214
BseDI	CCNNGG	7 cut(s)	45, 212, 213, 292, 756, 779, 898
BseGI	GGATG	3 cut(s)	207, 356, 515
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	587, 856, 880
BseMII	CTCAG	3 cut(s)	372, 690, 876
BseNI	ACTGG	3 cut(s)	308, 335, 347
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	842
BshFI	GGCC	3 cut(s)	219, 319, 637
BshNI	GGYRCC	1 cut(s)	786
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	5 cut(s)	294, 315, 588, 780, 790
BslFI	GGGAC	3 cut(s)	62, 641, 857
BslI	CCNNNNNNNGG	3 cut(s)	587, 856, 880
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	3 cut(s)	62, 641, 857
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	219, 319, 637
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	5 cut(s)	244, 267, 277, 370, 535
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	822
BspANI	GGCC	3 cut(s)	219, 319, 637
BspCNI	CTCAG	3 cut(s)	373, 691, 877
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	218, 788, 904
BspPI	GGATC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	786
BsrI	ACTGG	3 cut(s)	308, 335, 347
BssECI	CCNNGG	7 cut(s)	45, 212, 213, 292, 756, 779, 898
BssMI	GATC	5 cut(s)	244, 267, 277, 370, 535
BssNAI	GTATAC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	898
Bst1107I	GTATAC	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	46, 214
Bst4CI	ACNGT	5 cut(s)	16, 61, 485, 655, 757
Bst6I	CTCTTC	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	381, 699, 885
BstDSI	CCRYGG	1 cut(s)	756
BstEII	GGTNACC	2 cut(s)	443, 490
BstF5I	GGATG	3 cut(s)	207, 356, 515
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	5 cut(s)	247, 270, 280, 373, 538
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	5 cut(s)	244, 267, 277, 370, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 643
BstNI	CCWGG	2 cut(s)	46, 214
BstPI	GGTNACC	2 cut(s)	443, 490
BstSCI	CCNGG	7 cut(s)	44, 212, 292, 314, 586, 778, 779
BstV1I	GCAGC	1 cut(s)	842
BstX2I	RGATCY	2 cut(s)	370, 535
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	2 cut(s)	370, 535
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	219, 319, 637
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	3 cut(s)	207, 356, 515
BtsI	GCAGTG	3 cut(s)	190, 543, 679
BtsIMutI	CAGTG	6 cut(s)	66, 190, 340, 481, 543, 679
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	217, 317
Cfr9I	CCCGGG	1 cut(s)	779
Csp6I	GTAC	3 cut(s)	301, 787, 836
CviAII	CATG	7 cut(s)	86, 184, 248, 476, 549, 845, 961
CviQI	GTAC	3 cut(s)	301, 787, 836
DdeI	CTNAG	3 cut(s)	381, 699, 885
DpnI	GATC	5 cut(s)	246, 269, 279, 372, 537
DpnII	GATC	5 cut(s)	244, 267, 277, 370, 535
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	780
Eco57I	CTGAAG	3 cut(s)	387, 452, 691
Eco88I	CYCGRG	1 cut(s)	779
Eco91I	GGTNACC	2 cut(s)	443, 490
EcoO65I	GGTNACC	2 cut(s)	443, 490
EcoRII	CCWGG	2 cut(s)	44, 212
EcoT14I	CCWWGG	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	898
FaeI	CATG	7 cut(s)	89, 187, 251, 479, 552, 848, 964
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	3 cut(s)	62, 641, 857
FatI	CATG	7 cut(s)	85, 183, 247, 475, 548, 844, 960
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	2 cut(s)	823, 831
FokI	GGATG	3 cut(s)	194, 363, 502
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	2 cut(s)	823, 831
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	823, 831
HaeIII	GGCC	3 cut(s)	219, 319, 637
HapII	CCGG	5 cut(s)	294, 315, 588, 780, 790
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	7 cut(s)	89, 187, 251, 479, 552, 848, 964
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HindIII	AAGCTT	1 cut(s)	412
HinfI	GANTC	5 cut(s)	307, 337, 666, 690, 793
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	5 cut(s)	294, 315, 588, 780, 790
HphI	GGTGA	3 cut(s)	226, 455, 484
Hpy166II	GTNNAC	4 cut(s)	481, 555, 595, 892
Hpy188I	TCNGA	2 cut(s)	710, 939
Hpy188III	TCNNGA	7 cut(s)	110, 171, 198, 508, 533, 539, 845
Hpy8I	GTNNAC	4 cut(s)	481, 555, 595, 892
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	5 cut(s)	16, 61, 485, 655, 757
HpyCH4V	TGCA	9 cut(s)	20, 71, 128, 251, 452, 548, 614, 830, 964
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 643
HpyF3I	CTNAG	3 cut(s)	381, 699, 885
Hsp92II	CATG	7 cut(s)	89, 187, 251, 479, 552, 848, 964
HspAI	GCGC	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	244, 267, 277, 370, 535
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	2 cut(s)	29, 902
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	10, 443, 490
MalI	GATC	5 cut(s)	246, 269, 279, 372, 537
MboI	GATC	5 cut(s)	244, 267, 277, 370, 535
MboII	GAAGA	4 cut(s)	380, 436, 496, 742
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	370, 535
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	637
MluCI	AATT	6 cut(s)	101, 230, 453, 609, 623, 940
MluNI	TGGCCA	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	401
Mox20I	TGGCCA	1 cut(s)	637
MscI	TGGCCA	1 cut(s)	637
MseI	TTAA	3 cut(s)	375, 575, 891
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	637
MspA1I	CMGCKG	3 cut(s)	365, 698, 833
MspI	CCGG	5 cut(s)	294, 315, 588, 780, 790
MspR9I	CCNGG	7 cut(s)	46, 214, 294, 316, 588, 780, 781
MunI	CAATTG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	2 cut(s)	46, 214
MwoI	GCNNNNNNNGC	2 cut(s)	201, 643
NciI	CCSGG	5 cut(s)	294, 316, 588, 780, 781
NdeII	GATC	5 cut(s)	244, 267, 277, 370, 535
NlaIII	CATG	7 cut(s)	89, 187, 251, 479, 552, 848, 964
NlaIV	GGNNCC	3 cut(s)	218, 788, 904
NmuCI	GTSAC	2 cut(s)	443, 490
PagI	TCATGA	1 cut(s)	844
PasI	CCCWGGG	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	509
PctI	GAATGC	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	307, 337, 666, 690, 793
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	2 cut(s)	824, 832
Psp6I	CCWGG	2 cut(s)	44, 212
PspEI	GGTNACC	2 cut(s)	443, 490
PspGI	CCWGG	2 cut(s)	44, 212
PspN4I	GGNNCC	3 cut(s)	218, 788, 904
PspPI	GGNCC	2 cut(s)	217, 317
PsuI	RGATCY	2 cut(s)	370, 535
PvuII	CAGCTG	3 cut(s)	365, 698, 833
RsaI	GTAC	3 cut(s)	302, 788, 837
RsaNI	GTAC	3 cut(s)	301, 787, 836
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	375, 575, 891
SatI	GCNGC	2 cut(s)	823, 831
Sau3AI	GATC	5 cut(s)	244, 267, 277, 370, 535
Sau96I	GGNCC	2 cut(s)	217, 317
ScrFI	CCNGG	7 cut(s)	46, 214, 294, 316, 588, 780, 781
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	1 cut(s)	191
SmaI	CCCGGG	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	169, 531
SmoI	CTYRAG	2 cut(s)	169, 531
Sse9I	AATT	6 cut(s)	101, 230, 453, 609, 623, 940
SsiI	CCGC	1 cut(s)	822
SspI	AATATT	1 cut(s)	746
StyD4I	CCNGG	7 cut(s)	44, 212, 292, 314, 586, 778, 779
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	5 cut(s)	16, 61, 485, 655, 757
TaqI	TCGA	4 cut(s)	199, 270, 280, 801
TasI	AATT	6 cut(s)	101, 230, 453, 609, 623, 940
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	1 cut(s)	825
TfiI	GAWTC	5 cut(s)	307, 337, 666, 690, 793
Tru1I	TTAA	3 cut(s)	375, 575, 891
Tru9I	TTAA	3 cut(s)	375, 575, 891
TscAI	CASTG	6 cut(s)	66, 197, 347, 488, 550, 679
TseFI	GTSAC	2 cut(s)	443, 490
TseI	GCWGC	1 cut(s)	830
Tsp45I	GTSAC	2 cut(s)	443, 490
TspDTI	ATGAA	5 cut(s)	102, 821, 833, 878, 927
TspMI	CCCGGG	1 cut(s)	779
TspRI	CASTG	6 cut(s)	66, 197, 347, 488, 550, 679
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327
XmaI	CCCGGG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.