Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293159.1

Orthogroup ID

OG0009758

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 876

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 473 bp

aaccatatccactgtcaagccaatagaaaggttttcaagaaaccatccttctgccaagctcaaaatccagacacagcatggtatactaaacttgaggagtgtttgactccattgcccggagcgaacaacataaaagaagttgcaggtggggaattggctaaatggccagcgaggctaactacagttcctccaagaattagtagtggaagtttgaaaggaattacagctgagatgttcagagaaaacacggcgctatggaaacagagagttgcacattataagaccttggactatcagttggcagaccctgggaggtatcgcaatttgcttgacatgaactcttacttggggagctttgcggctgcactggctgatgaccctgcatgggttatgaacattgtccccgttgaggctgaggtgaacacccttggagccatttatgaacgtggattgattggaacttatcagaattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

157

Amino Acids

17.52

Weight (kDa)

8.45

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45750 AT4G00750
fragaria_vesca	FvH4_7g13290
malus_domestica	MD01G1050600.v1.1 MD07G1127900.v1.1
prunus_persica	Prupe.2G156500_v2.0.a1
pyrus_communis	pycom01g07540 pycom01g07550 pycom07g12340
rosa_chinensis	RchiOBHm_Chr1g0352551
rosa_laevigata	RLG00000028331
rosa_multiflora	Rmu_co8293159.1_g000001 Rmu_sc0000911.1_g000032
rosa_roxburghii	Rroxscaffold_4G00302640
rosa_rugosa	Rorug01G0230000
rosa_samantha	Rh1AG243500 Rh1BG214100 Rh1CG227000 Rh1DG240100
rosa_wichuraiana	Rw1G021280 Rw1G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	116, 385, 409
AgsI	TTSAA	2 cut(s)	37, 214
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	59, 227, 354
AluI	AGCT	3 cut(s)	59, 227, 354
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	360, 363
BlsI	GCNGC	2 cut(s)	361, 364
Bme1390I	CCNGG	2 cut(s)	117, 309
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	117, 309
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	285, 307, 308, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 385, 409
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	285, 307, 308, 427
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	3 cut(s)	116, 385, 409
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	219, 405
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	116, 385, 409
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	220, 406
BspLI	GGNNCC	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	4 cut(s)	285, 307, 308, 427
BssNAI	GTATAC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	285, 427
Bst1107I	GTATAC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	14, 184
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	228, 414
BstF5I	GGATG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 368
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	115, 307
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	10, 365
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	1 cut(s)	253
CviAII	CATG	3 cut(s)	78, 334, 384
DdeI	CTNAG	2 cut(s)	228, 414
EaeI	YGGCCR	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	285, 427
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	285, 427
ErhI	CCWWGG	2 cut(s)	285, 427
FaeI	CATG	3 cut(s)	81, 337, 387
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	3 cut(s)	77, 333, 383
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	360, 363
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	360, 363
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	360, 363
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	81, 337, 387
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	84, 421
Hpy188I	TCNGA	2 cut(s)	239, 468
Hpy188III	TCNNGA	2 cut(s)	37, 68
Hpy8I	GTNNAC	2 cut(s)	84, 421
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	14, 184
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	4 cut(s)	143, 272, 365, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 368
HpyF3I	CTNAG	2 cut(s)	228, 414
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	81, 337, 387
HspAI	GCGC	1 cut(s)	251
LmnI	GCTCC	3 cut(s)	119, 351, 431
LpnPI	CCDG	8 cut(s)	81, 129, 130, 180, 294, 321, 353, 393
Lsp1109I	GCAGC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	5 cut(s)	152, 195, 219, 322, 469
MluNI	TGGCCA	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	88, 165, 198, 306, 403, 409
Mox20I	TGGCCA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	166
Msp20I	TGGCCA	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	117, 309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	172, 368
NciI	CCSGG	1 cut(s)	117
NlaIII	CATG	3 cut(s)	81, 337, 387
NlaIV	GGNNCC	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	134
PasI	CCCWGGG	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	361, 364
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	227
SatI	GCNGC	2 cut(s)	360, 363
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	117, 309
SetI	ASST	9 cut(s)	33, 61, 148, 229, 287, 317, 356, 420, 448
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	5 cut(s)	152, 195, 219, 322, 469
SsiI	CCGC	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	115, 307
StyI	CCWWGG	2 cut(s)	285, 427
TaaI	ACNGT	2 cut(s)	14, 184
TaiI	ACGT	1 cut(s)	448
TasI	AATT	5 cut(s)	152, 195, 219, 322, 469
TauI	GCSGC	1 cut(s)	362
TscAI	CASTG	2 cut(s)	17, 372
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	350, 407, 456
TspRI	CASTG	2 cut(s)	17, 372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.