Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009758

Physical Location & Seq

Genomic Coordinates Reverse (-)

8481928 .. 8482614

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACGGTAGCCGCAGTCCTCTGCACGATCTGCTACCTCGTCGGAATTTGGCAGCACTCAACCAGCCGCGCCGTAATTAACACATCTGTCTCCGCCGTCGCCTCATGTCCTCCAATCACCACAAACACAACAATCACTCTCGACTTCAACGCCCACCACCGCGCCGAGGACCTCCCACTACCTCCCGTGGCTGCGCGTGTGGCTCACCTGCCGGCCTGCGACGCCAAGCACAGCGAGTACACCCCGTGCGAGGACGCCACGAGATCGCTCAAGTTCGACAGGGATAGGTTGGTGTACAGGGAGAGGCATTGCCCGGACAAGGAGGAACTCCTGAAGTGTCGGATTCCAGCGCCTCACGGCTACACGGTACCGTTTCGGTGGCCGGAGAGCCGAGAATCGGTTTCGTATGCAAACGTGCCGCACAAGGAGTTGACCGTGGAGAAGAAGATGCAGAACTGGGTTCATTACGAAGGGGATCGGTTTAGATTCCCTGGTGGCGGGACCATGTTTCCTCGCGGTGCAGATGCGTATATTGATGATATCGGAAAGTTGATTAATCTCAGAGAGGGGTCTATACGGACCGCCATCGATACCGGTTGCGGGGTAAGCAAGTTTTATTTACTTTTATTTATTTATTTATTATTTCGGTTTGAAAAGCTATCATGGTTATGGTTACGAGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

8.4

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	79 - 208	6.3e-52	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45750 AT4G00750
fragaria_vesca	FvH4_7g13290
malus_domestica	MD01G1050600.v1.1 MD07G1127900.v1.1
prunus_persica	Prupe.2G156500_v2.0.a1
pyrus_communis	pycom01g07540 pycom01g07550 pycom07g12340
rosa_chinensis	RchiOBHm_Chr1g0352551
rosa_laevigata	RLG00000028331
rosa_multiflora	Rmu_co8293159.1_g000001 Rmu_sc0000911.1_g000032
rosa_roxburghii	Rroxscaffold_4G00302640
rosa_rugosa	Rorug01G0230000
rosa_samantha	Rh1AG243500 Rh1BG214100 Rh1CG227000 Rh1DG240100
rosa_wichuraiana	Rw1G021280 Rw1G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	216
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AccII	CGCG	4 cut(s)	69, 162, 196, 516
AciI	CCGC	9 cut(s)	12, 67, 93, 160, 419, 498, 516, 582, 600
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	353
AcyI	GRCGYC	2 cut(s)	222, 255
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	3 cut(s)	239, 296, 369
AfiI	CCNNNNNNNGG	6 cut(s)	166, 250, 319, 397, 497, 600
AgeI	ACCGGT	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	148, 653
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	1 cut(s)	658
AluI	AGCT	1 cut(s)	658
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	213, 380
ApeKI	GCWGC	2 cut(s)	52, 191
ApoI	RAATTY	1 cut(s)	45
AseI	ATTAAT	1 cut(s)	555
AsiGI	ACCGGT	1 cut(s)	593
Asp718I	GGTACC	1 cut(s)	367
AspLEI	GCGC	4 cut(s)	71, 164, 196, 352
AspS9I	GGNCC	3 cut(s)	169, 501, 579
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	109, 197
AvaII	GGWCC	3 cut(s)	169, 501, 579
BanI	GGYRCC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	64, 178
BccI	CCATC	1 cut(s)	593
BceAI	ACGGC	3 cut(s)	56, 80, 373
BciT130I	CCWGG	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	216
BisI	GCNGC	5 cut(s)	12, 53, 67, 192, 419
BlsI	GCNGC	5 cut(s)	13, 54, 68, 193, 420
Bme1390I	CCNGG	2 cut(s)	314, 492
Bme18I	GGWCC	3 cut(s)	169, 501, 579
BmgT120I	GGNCC	3 cut(s)	169, 501, 579
BmiI	GGNNCC	2 cut(s)	369, 502
BmrFI	CCNGG	2 cut(s)	314, 492
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	438, 514
BmuI	ACTGGG	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	588
BsaHI	GRCGYC	2 cut(s)	222, 255
BsaJI	CCNNGG	4 cut(s)	165, 186, 435, 490
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 250, 319, 397, 497, 600
Bse118I	RCCGGY	2 cut(s)	211, 593
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	4 cut(s)	165, 186, 435, 490
BseLI	CCNNNNNNNGG	6 cut(s)	166, 250, 319, 397, 497, 600
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	64, 178
BsgI	GTGCAG	2 cut(s)	7, 540
Bsh1236I	CGCG	4 cut(s)	69, 162, 196, 516
BshFI	GGCC	2 cut(s)	215, 382
BshNI	GGYRCC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	593
BshVI	ATCGAT	1 cut(s)	588
BsiSI	CCGG	4 cut(s)	212, 314, 383, 594
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	6 cut(s)	166, 250, 319, 397, 497, 600
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	215, 382
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	27, 263, 475
BspACI	CCGC	9 cut(s)	12, 67, 93, 160, 419, 498, 516, 582, 600
BspANI	GGCC	2 cut(s)	215, 382
BspCNI	CTCAG	1 cut(s)	573
BspDI	ATCGAT	1 cut(s)	588
BspFNI	CGCG	4 cut(s)	69, 162, 196, 516
BspLI	GGNNCC	2 cut(s)	369, 502
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	211, 593
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	2 cut(s)	211, 593
BssECI	CCNNGG	4 cut(s)	165, 186, 435, 490
BssMI	GATC	3 cut(s)	27, 263, 475
BssNI	GRCGYC	2 cut(s)	222, 255
BssSI	CACGAG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	4 cut(s)	7, 367, 372, 436
BstACI	GRCGYC	2 cut(s)	222, 255
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	213, 217
BstDEI	CTNAG	1 cut(s)	560
BstDSI	CCRYGG	2 cut(s)	186, 435
BstFNI	CGCG	4 cut(s)	69, 162, 196, 516
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	4 cut(s)	71, 164, 196, 352
BstKTI	GATC	3 cut(s)	30, 266, 478
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	27, 263, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 200, 221, 606
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	312, 490
BstUI	CGCG	4 cut(s)	69, 162, 196, 516
BstV1I	GCAGC	2 cut(s)	64, 178
Bsu15I	ATCGAT	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	215, 382
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	2 cut(s)	186, 435
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	213, 217
CfoI	GCGC	4 cut(s)	71, 164, 196, 352
Cfr10I	RCCGGY	2 cut(s)	211, 593
Cfr13I	GGNCC	3 cut(s)	169, 501, 579
ClaI	ATCGAT	1 cut(s)	588
CpoI	CGGWCCG	1 cut(s)	579
CseI	GACGC	2 cut(s)	230, 263
Csp6I	GTAC	3 cut(s)	238, 295, 368
CspAI	ACCGGT	1 cut(s)	593
CspI	CGGWCCG	1 cut(s)	579
CviAII	CATG	3 cut(s)	105, 505, 663
CviJI	RGCY	9 cut(s)	11, 66, 191, 203, 215, 360, 382, 390, 658
CviKI_1	RGCY	9 cut(s)	11, 66, 191, 203, 215, 360, 382, 390, 658
CviQI	GTAC	3 cut(s)	238, 295, 368
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	29, 265, 477
DpnII	GATC	3 cut(s)	27, 263, 475
DraIII	CACNNNGTG	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	3 cut(s)	169, 501, 579
Eco57I	CTGAAG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	541
FaeI	CATG	3 cut(s)	108, 508, 666
FaiI	YATR	7 cut(s)	106, 408, 506, 531, 575, 664, 670
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	104, 504, 662
FauI	CCCGC	2 cut(s)	491, 593
Fnu4HI	GCNGC	5 cut(s)	12, 53, 67, 192, 419
Fsp4HI	GCNGC	5 cut(s)	12, 53, 67, 192, 419
GlaI	GCGC	4 cut(s)	70, 163, 195, 351
GluI	GCNGC	5 cut(s)	12, 53, 67, 192, 419
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	215, 382
HapII	CCGG	4 cut(s)	212, 314, 383, 594
HgaI	GACGC	2 cut(s)	230, 263
HhaI	GCGC	4 cut(s)	71, 164, 196, 352
Hin1I	GRCGYC	2 cut(s)	222, 255
Hin1II	CATG	3 cut(s)	108, 508, 666
Hin6I	GCGC	4 cut(s)	69, 162, 194, 350
HinP1I	GCGC	4 cut(s)	69, 162, 194, 350
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	343, 395, 486
HpaII	CCGG	4 cut(s)	212, 314, 383, 594
HphI	GGTGA	2 cut(s)	109, 197
Hpy166II	GTNNAC	3 cut(s)	240, 295, 432
Hpy188I	TCNGA	4 cut(s)	44, 342, 545, 563
Hpy188III	TCNNGA	2 cut(s)	140, 331
Hpy8I	GTNNAC	3 cut(s)	240, 295, 432
Hpy99I	CGWCG	3 cut(s)	44, 101, 224
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	4 cut(s)	7, 367, 372, 436
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	24, 410, 451, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 200, 221, 606
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	414
Hsp92I	GRCGYC	2 cut(s)	222, 255
Hsp92II	CATG	3 cut(s)	108, 508, 666
HspAI	GCGC	4 cut(s)	69, 162, 194, 350
KpnI	GGTACC	1 cut(s)	371
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	27, 263, 475
Lsp1109I	GCAGC	2 cut(s)	64, 178
LweI	GCATC	2 cut(s)	438, 514
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	3 cut(s)	29, 265, 477
MboI	GATC	3 cut(s)	27, 263, 475
MboII	GAAGA	2 cut(s)	454, 457
MluCI	AATT	2 cut(s)	45, 75
MmeI	TCCRAC	2 cut(s)	22, 320
MroNI	GCCGGC	1 cut(s)	211
MseI	TTAA	2 cut(s)	78, 555
MslI	CAYNNNNRTG	1 cut(s)	667
MspI	CCGG	4 cut(s)	212, 314, 383, 594
MspR9I	CCNGG	2 cut(s)	314, 492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	4 cut(s)	69, 162, 196, 516
MwoI	GCNNNNNNNGC	4 cut(s)	30, 200, 221, 606
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	27, 263, 475
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	108, 508, 666
NlaIV	GGNNCC	2 cut(s)	369, 502
NmeAIII	GCCGAG	2 cut(s)	190, 416
PaqCI	CACCTGC	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	343, 395, 486
PinAI	ACCGGT	1 cut(s)	593
PkrI	GCNGC	5 cut(s)	13, 54, 68, 193, 420
PpuMI	RGGWCCY	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	369, 502
PspPI	GGNCC	3 cut(s)	169, 501, 579
PspPPI	RGGWCCY	1 cut(s)	169
RsaI	GTAC	3 cut(s)	239, 296, 369
RsaNI	GTAC	3 cut(s)	238, 295, 368
RseI	CAYNNNNRTG	1 cut(s)	667
Rsr2I	CGGWCCG	1 cut(s)	579
RsrII	CGGWCCG	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	78, 555
SatI	GCNGC	5 cut(s)	12, 53, 67, 192, 419
Sau3AI	GATC	3 cut(s)	27, 263, 475
Sau96I	GGNCC	3 cut(s)	169, 501, 579
ScrFI	CCNGG	2 cut(s)	314, 492
SetI	ASST	7 cut(s)	39, 174, 184, 210, 290, 417, 660
SfaNI	GCATC	2 cut(s)	438, 514
SinI	GGWCC	3 cut(s)	169, 501, 579
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	45, 75
SsiI	CCGC	9 cut(s)	12, 67, 93, 160, 419, 498, 516, 582, 600
StyD4I	CCNGG	2 cut(s)	312, 490
TaaI	ACNGT	4 cut(s)	7, 367, 372, 436
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	141, 276, 588
TasI	AATT	2 cut(s)	45, 75
TatI	WGTACW	2 cut(s)	237, 294
TauI	GCSGC	3 cut(s)	14, 69, 421
TfiI	GAWTC	3 cut(s)	343, 395, 486
Tru1I	TTAA	2 cut(s)	78, 555
Tru9I	TTAA	2 cut(s)	78, 555
TseI	GCWGC	2 cut(s)	52, 191
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	169, 501, 579
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.