Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007460

Physical Location & Seq

Genomic Coordinates Reverse (-)

13033439 .. 13035177

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACGCTGCAGCTTTGCTTAATTAATTTGTCCCACCCCCACATTGTTGGGTTGAAGAACACTCTGGCTCAAGTTAATCCTTTAGACCAAGATGTTATTGATGGTTTTGGGAACTATAACCTAGAGGTCGCTGGAGTTGAGGGCTCTGGTTTTGAAAACAAATCGGTTCTCAATCTTTACTTCCTTGACAGCAGAGATTACTCCACGGTTCCCTCCATCGGTGGTTATGGTTGGATCAAACCCTCCCAACAATATTGGTTTGAACAAACTTCTGCAAAGCTTCAGAAAGCATACATAAGCAAGCAACTGCCCCAGAAAGCACCTGCACCAGGGCTCGCATGCTTTCACATACCATTGCCGGAATTTGCTAGTTTTGACTCATCAAACTTTACAGGAGTGAGGCAAGAGGGCATTAGCTCTGCTTCTGTGAACTCGGGCTTCTTCACAACGATGGTTGCAGCAGGAGATGTGAAGGCAGTGTTCACAGGTCACGATCACCTCAATGACTTCTGCGGGGAGCTAACTGGCATAAACCTTTGTTATGCTGGGGGATTTGGATACCATGCTTATGGGAAGCCTGGATGGGATCGGAGAGCAAGGGTTGTGGTAGCAAACTTAGAGAAAACGCAAAAGGGAGGTTGGGGAGCGGTCAAGTCAATCAAAACATGGAAGCGTCTTGATGATGAGCACCTCACTGCTTTTGATGGTGAGGTTCTCTGGAGCAAGAGCTCTGTAGGTATTCGTAGAAAACCTGTTGGCGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

256

Amino Acids

27.85

Weight (kDa)

7.69

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63140
fragaria_vesca	FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180
malus_domestica	MD01G1098300.v1.1 MD07G1164800.v1.1
prunus_persica	Prupe.2G203700_v2.0.a1
pyrus_communis	pycom01g11980 pycom01g12220 pycom01g12480 pycom01g12530 pycom07g16010
rosa_chinensis	RchiOBHm_Chr1g0361821
rosa_laevigata	RLG00000027701
rosa_multiflora	Rmu_ssc0000124.1_g000019
rosa_roxburghii	Rroxscaffold_4G00294680
rosa_rugosa	Rorug01G0291400
rosa_samantha	Rh1AG302100 Rh1BG264900 Rh1CG283300 Rh1DG295000
rosa_wichuraiana	Rw1G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	647
AciI	CCGC	3 cut(s)	513, 647, 759
AclWI	GGATC	2 cut(s)	242, 594
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	218, 329, 758
AgsI	TTSAA	3 cut(s)	55, 155, 263
AjnI	CCWGG	2 cut(s)	328, 577
AluBI	AGCT	5 cut(s)	13, 280, 417, 520, 729
AluI	AGCT	5 cut(s)	13, 280, 417, 520, 729
Alw21I	GWGCWC	2 cut(s)	690, 731
AlwI	GGATC	2 cut(s)	242, 594
Ama87I	CYCGRG	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	7, 10, 458
ApoI	RAATTY	1 cut(s)	362
AseI	ATTAAT	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	488, 719
AvaI	CYCGRG	1 cut(s)	433
BanII	GRGCYC	3 cut(s)	146, 336, 731
Bbv12I	GWGCWC	2 cut(s)	690, 731
BbvI	GCAGC	2 cut(s)	22, 470
BccI	CCATC	5 cut(s)	95, 224, 445, 576, 698
BciT130I	CCWGG	2 cut(s)	330, 579
BciVI	GTATCC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	122, 369
BfmI	CTRYAG	2 cut(s)	8, 732
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	3 cut(s)	8, 11, 459
BlsI	GCNGC	3 cut(s)	9, 12, 460
Bme1390I	CCNGG	2 cut(s)	330, 579
BmeT110I	CYCGRG	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	330, 579
BpmI	CTGGAG	2 cut(s)	153, 739
BpuEI	CTTGAG	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	204, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 329, 758
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	330, 579
BseDI	CCNNGG	2 cut(s)	204, 329
BseGI	GGATG	1 cut(s)	587
BseLI	CCNNNNNNNGG	3 cut(s)	218, 329, 758
BseMI	GCAATG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	2 cut(s)	22, 470
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	690, 731
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	218, 329, 758
BsmFI	GGGAC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	4 cut(s)	146, 336, 690, 731
Bsp143I	GATC	3 cut(s)	234, 493, 586
BspACI	CCGC	3 cut(s)	513, 647, 759
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	242, 594
BsrBI	CCGCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	204, 329
BssMI	GATC	3 cut(s)	234, 493, 586
Bst2UI	CCWGG	2 cut(s)	330, 579
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	302, 336, 340
BstDEI	CTNAG	1 cut(s)	616
BstDSI	CCRYGG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	587
BstKTI	GATC	3 cut(s)	237, 496, 589
BstMBI	GATC	3 cut(s)	234, 493, 586
BstNI	CCWGG	2 cut(s)	330, 579
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	328, 577
BstSFI	CTRYAG	2 cut(s)	8, 732
BstV1I	GCAGC	2 cut(s)	22, 470
BstXI	CCANNNNNNTGG	2 cut(s)	47, 569
BsuI	GTATCC	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	587
BtsI	GCAGTG	2 cut(s)	483, 693
BtsIMutI	CAGTG	2 cut(s)	483, 693
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	302, 336, 340
CseI	GACGC	2 cut(s)	13, 662
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	3 cut(s)	339, 563, 666
DdeI	CTNAG	1 cut(s)	616
DpnI	GATC	3 cut(s)	236, 495, 588
DpnII	GATC	3 cut(s)	234, 493, 586
Ecl136II	GAGCTC	1 cut(s)	729
Eco24I	GRGCYC	3 cut(s)	146, 336, 731
Eco53kI	GAGCTC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	729
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	328, 577
EcoT38I	GRGCYC	3 cut(s)	146, 336, 731
FaeI	CATG	3 cut(s)	342, 566, 669
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	3 cut(s)	338, 562, 665
FauI	CCCGC	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	8, 11, 459
FokI	GGATG	1 cut(s)	594
FriOI	GRGCYC	3 cut(s)	146, 336, 731
Fsp4HI	GCNGC	3 cut(s)	8, 11, 459
FspBI	CTAG	2 cut(s)	122, 369
GluI	GCNGC	3 cut(s)	8, 11, 459
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	153, 739
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	2 cut(s)	13, 662
Hin1II	CATG	3 cut(s)	342, 566, 669
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	488, 719
Hpy166II	GTNNAC	2 cut(s)	430, 483
Hpy188I	TCNGA	2 cut(s)	285, 591
Hpy188III	TCNNGA	3 cut(s)	491, 677, 718
Hpy8I	GTNNAC	2 cut(s)	430, 483
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	10, 275, 326, 458
HpyF3I	CTNAG	1 cut(s)	616
Hsp92II	CATG	3 cut(s)	342, 566, 669
Kzo9I	GATC	3 cut(s)	234, 493, 586
LmnI	GCTCC	3 cut(s)	517, 644, 720
Lsp1109I	GCAGC	2 cut(s)	22, 470
MaeI	CTAG	2 cut(s)	122, 369
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	3 cut(s)	236, 495, 588
MbiI	CCGCTC	1 cut(s)	647
MboI	GATC	3 cut(s)	234, 493, 586
MboII	GAAGA	2 cut(s)	67, 433
MhlI	GDGCHC	4 cut(s)	146, 336, 690, 731
MluCI	AATT	4 cut(s)	21, 25, 362, 763
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	212
MseI	TTAA	3 cut(s)	20, 24, 75
MslI	CAYNNNNRTG	3 cut(s)	449, 501, 567
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	330, 579
MvaI	CCWGG	2 cut(s)	330, 579
NdeII	GATC	3 cut(s)	234, 493, 586
NlaIII	CATG	3 cut(s)	342, 566, 669
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	488
NspI	RCATGY	1 cut(s)	342
PacI	TTAATTAA	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	342
PaqCI	CACCTGC	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	9, 12, 460
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	731
Psp6I	CCWGG	2 cut(s)	328, 577
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	328, 577
PspN4I	GGNNCC	1 cut(s)	210
PstI	CTGCAG	1 cut(s)	12
RseI	CAYNNNNRTG	3 cut(s)	449, 501, 567
SacI	GAGCTC	1 cut(s)	731
SaqAI	TTAA	3 cut(s)	20, 24, 75
SatI	GCNGC	3 cut(s)	8, 11, 459
Sau3AI	GATC	3 cut(s)	234, 493, 586
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	330, 579
SduI	GDGCHC	4 cut(s)	146, 336, 690, 731
SfcI	CTRYAG	2 cut(s)	8, 732
SmiMI	CAYNNNNRTG	3 cut(s)	449, 501, 567
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	21, 25, 362, 763
SsiI	CCGC	3 cut(s)	513, 647, 759
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	2 cut(s)	122, 369
SstI	GAGCTC	1 cut(s)	731
StyD4I	CCNGG	2 cut(s)	328, 577
TaaI	ACNGT	1 cut(s)	208
TasI	AATT	4 cut(s)	21, 25, 362, 763
Tru1I	TTAA	3 cut(s)	20, 24, 75
Tru9I	TTAA	3 cut(s)	20, 24, 75
TscAI	CASTG	2 cut(s)	483, 700
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	3 cut(s)	7, 10, 458
Tsp45I	GTSAC	1 cut(s)	488
TspRI	CASTG	2 cut(s)	483, 700
VspI	ATTAAT	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	2 cut(s)	122, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.