Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007460

Physical Location & Seq

Genomic Coordinates Reverse (-)

13241511 .. 13242333

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAAACACATAGTTGGGTTGAAGAACACTCTGGCTCAAGTTAATCCTTTAGACCAAGATGTTATTGATGGTTTTGGGAACTTTAACCTAGAGGTTGCCGGAGTTGAGGGCTCTGGTTTTGAAAACAAATCGGTTCTCAATCTTTACTTCCTTGACAGCAGAGATTACTCCACGGTTCCCTCCATCGGTGGTTATGGTTGGATCAAACCCTCCCAACAATATTGGTTTGAACAAACTTCTGCAAAGCTTCAGAAAGTGTACATAAGCAAGCCAATGCCCCAGAAAGCACCTGCGCCGGGGCTCGCATACTTTCACATACCATTGCCGGAATTTGCTAGTTTTGACTCATCAAACTTTACCGGAGTGTGGCAAGAAGACATTAGCTCTGCTTCTGTGAACTCGGGCTTCTTCACAACCATGGTTGCAGCAGGAGATGTGAAGGCAGTGTTCACAGGTCACGATCACCTCAATGACTTCTGCGGGGAGCTAACTGGCATAAACCTTTGTTATGCTGGGGGATTTGGATACCATGCTTATGGGAAGGCTGGATGGGATCGATCCACTGAGAGCAAGGGTTGTGGTAGCAAACTTAGAGAAAACGCAAAAGGGACGTTGGGGAGTGGTCAAGTCAATCAAAACATGGAAGCGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

218

Amino Acids

23.52

Weight (kDa)

5.49

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63140
fragaria_vesca	FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180
malus_domestica	MD01G1098300.v1.1 MD07G1164800.v1.1
prunus_persica	Prupe.2G203700_v2.0.a1
pyrus_communis	pycom01g11980 pycom01g12220 pycom01g12480 pycom01g12530 pycom07g16010
rosa_chinensis	RchiOBHm_Chr1g0361821
rosa_laevigata	RLG00000027701
rosa_multiflora	Rmu_ssc0000124.1_g000019
rosa_roxburghii	Rroxscaffold_4G00294680
rosa_rugosa	Rorug01G0291400
rosa_samantha	Rh1AG302100 Rh1BG264900 Rh1CG283300 Rh1DG295000
rosa_wichuraiana	Rw1G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
Acc36I	ACCTGC	1 cut(s)	298
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	3 cut(s)	209, 552, 561
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	185, 296, 366
AgsI	TTSAA	3 cut(s)	22, 122, 230
AluBI	AGCT	3 cut(s)	247, 384, 487
AluI	AGCT	3 cut(s)	247, 384, 487
AlwI	GGATC	3 cut(s)	209, 552, 561
Ama87I	CYCGRG	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	295, 649
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	113, 303
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	3 cut(s)	62, 191, 543
BciVI	GTATCC	1 cut(s)	518
BcnI	CCSGG	1 cut(s)	297
BfaI	CTAG	2 cut(s)	89, 336
BfoI	RGCGCY	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	518
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	556
BsaJI	CCNNGG	3 cut(s)	171, 296, 417
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 296, 366
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	556
BseDI	CCNNGG	3 cut(s)	171, 296, 417
BseGI	GGATG	1 cut(s)	554
BseLI	CCNNNNNNNGG	3 cut(s)	185, 296, 366
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	512
BshVI	ATCGAT	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	4 cut(s)	99, 296, 326, 360
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	3 cut(s)	185, 296, 366
BsmFI	GGGAC	1 cut(s)	622
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	113, 303
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	201, 460, 553, 557
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	556
BspDI	ATCGAT	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	3 cut(s)	209, 552, 561
BsrDI	GCAATG	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	3 cut(s)	171, 296, 417
BssMI	GATC	4 cut(s)	201, 460, 553, 557
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	269, 303
BstDEI	CTNAG	2 cut(s)	564, 590
BstDSI	CCRYGG	2 cut(s)	171, 417
BstF5I	GGATG	1 cut(s)	554
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	2 cut(s)	295, 649
BstKTI	GATC	4 cut(s)	204, 463, 556, 560
BstMBI	GATC	4 cut(s)	201, 460, 553, 557
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	518
BsuTUI	ATCGAT	1 cut(s)	556
BtgI	CCRYGG	2 cut(s)	171, 417
BtsCI	GGATG	1 cut(s)	554
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	2 cut(s)	450, 561
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	269, 303
CfoI	GCGC	2 cut(s)	295, 649
ClaI	ATCGAT	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	3 cut(s)	418, 530, 640
CviJI	RGCY	9 cut(s)	35, 111, 247, 271, 301, 384, 405, 487, 545
CviKI_1	RGCY	9 cut(s)	35, 111, 247, 271, 301, 384, 405, 487, 545
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	564, 590
DpnI	GATC	4 cut(s)	203, 462, 555, 559
DpnII	GATC	4 cut(s)	201, 460, 553, 557
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	113, 303
Eco57I	CTGAAG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	113, 303
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	3 cut(s)	421, 533, 643
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	3 cut(s)	417, 529, 639
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	2 cut(s)	113, 303
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	89, 336
GlaI	GCGC	2 cut(s)	294, 648
GluI	GCNGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	516
HaeII	RGCGCY	1 cut(s)	650
HapII	CCGG	4 cut(s)	99, 296, 326, 360
HhaI	GCGC	2 cut(s)	295, 649
Hin1II	CATG	3 cut(s)	421, 533, 643
Hin6I	GCGC	2 cut(s)	293, 647
HinP1I	GCGC	2 cut(s)	293, 647
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	4 cut(s)	99, 296, 326, 360
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	259, 397, 450
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	3 cut(s)	259, 397, 450
HpyAV	CCTTC	2 cut(s)	433, 535
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	2 cut(s)	242, 425
HpyF3I	CTNAG	2 cut(s)	564, 590
HpySE526I	ACGT	1 cut(s)	611
Hsp92II	CATG	3 cut(s)	421, 533, 643
HspAI	GCGC	2 cut(s)	293, 647
Kzo9I	GATC	4 cut(s)	201, 460, 553, 557
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	1 cut(s)	437
MaeI	CTAG	2 cut(s)	89, 336
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	4 cut(s)	203, 462, 555, 559
MboI	GATC	4 cut(s)	201, 460, 553, 557
MboII	GAAGA	3 cut(s)	34, 386, 400
MhlI	GDGCHC	2 cut(s)	113, 303
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	85, 100, 190, 220, 476
MseI	TTAA	2 cut(s)	42, 84
MslI	CAYNNNNRTG	3 cut(s)	416, 468, 534
MspI	CCGG	4 cut(s)	99, 296, 326, 360
MspR9I	CCNGG	1 cut(s)	297
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	201, 460, 553, 557
NlaIII	CATG	3 cut(s)	421, 533, 643
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	455
PaqCI	CACCTGC	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	3 cut(s)	416, 468, 534
SaqAI	TTAA	2 cut(s)	42, 84
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	4 cut(s)	201, 460, 553, 557
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	2 cut(s)	113, 303
SmiMI	CAYNNNNRTG	3 cut(s)	416, 468, 534
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	2 cut(s)	89, 336
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	556
TasI	AATT	1 cut(s)	329
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	42, 84
Tru9I	TTAA	2 cut(s)	42, 84
TscAI	CASTG	2 cut(s)	450, 568
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	450, 568
XapI	RAATTY	1 cut(s)	329
XspI	CTAG	2 cut(s)	89, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.