Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007460

Physical Location & Seq

Genomic Coordinates Reverse (-)

18499745 .. 18510218

Gene Structure 10474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAGAGGGACAGGGAGGTGCTCAGGAGTCCATTTTTAGCGGGGGTTGTGGTGGCGGCGCTGCTTCCGATATGGGTTTTGGCTGCTGCAAAACAACAGCATCACCACCATCACCGAGGAATTGGGGAGAAGAAGCTGAGGTTTGGGACAGATGGGCAGTTTAAGATTCTGCAAGTGGCGGATATGCACTACGGCAATGGCAAGACTACACCTTGTGAGGATGTGCTGCCGTCCCAGTTTGCAACTTGCTCTGACCTCAACACCACCGCCTTTGTCCGCCGCATGATCGAGGCGGAGAAGCCGAATCTCATTGTCTTCACCGGAGATAACATATACGGGTTTGATGCCACGAATGCTGCTAAATCTTTGAACGAGGCGTTCGCCCCAGCAATCGCGTCCAACATCCCGTGGGCAGCTGTGTTGGGGAACCATGATCAGGAATCCGACCTCTCGAGGGAAGGGGTAATGAAACACATAGTTGGGTTGAAGAACACTCTGGCTCAAGTTAATCCTTTAGGCCAAGATGTTATTGATGGTTTTGGGAACTATAACCTAGAGGTCGCCGGAGTTGAGGGCTTTGGTTTTGAAAACAAATCGGTTCTCAATCTTTACTTCCTTGACAGCGGAGATTACTCCACGGTTCCCTCCATAGGTGGCTATGGTTGGATCAAACCCTCCCAACAATATTGGTTTGAACAAACTTCTGCAAAGCTTCAGAAAGCATACATGAGCAAGCCCCTACCCCAGAAAGCGCCTGCGCCAGGGCTTGCATACTTTCACATACCATTGCCGGAATTTGCTAGTTTTGACTCATCAAACTTTACAGGAGTGAAACAAGAAGGCATTAGCTCTGCTTCTGTGAACTCGGGCTTCTTCACAACTATGGTTGCAGCAGGAGATGTGAAGGCAGCATTCGTAGGCCATGATCACCTCAATGACTTCTGTGGGGAGCTAACTGGTATAAACCTTTGTTATGCTGGGGGATTTGGATACCATGCTTATGGGAAGGCTGGATGGGATAGGAGAGCAAGGGTGGTGGAAGCAAACTTAGAGAAAACGGTTAAGGGAGGTTGGGGAGCGGTCAAGTCCATCAAAACATGGAAGCGCCTTGATGATGAGCACCTCACTGCTATCGATGGTCAGGTTCTCTGGAGCAAGAGCTCTGTGGGTATGCGTAGAAAGAAACCTGTTGGCGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

401

Amino Acids

43.63

Weight (kDa)

8.19

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63140
fragaria_vesca	FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180
malus_domestica	MD01G1098300.v1.1 MD07G1164800.v1.1
prunus_persica	Prupe.2G203700_v2.0.a1
pyrus_communis	pycom01g11980 pycom01g12220 pycom01g12480 pycom01g12530 pycom07g16010
rosa_chinensis	RchiOBHm_Chr1g0361821
rosa_laevigata	RLG00000027701
rosa_multiflora	Rmu_ssc0000124.1_g000019
rosa_roxburghii	Rroxscaffold_4G00294680
rosa_rugosa	Rorug01G0291400
rosa_samantha	Rh1AG302100 Rh1BG264900 Rh1CG283300 Rh1DG295000
rosa_wichuraiana	Rw1G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1079
AccII	CGCG	1 cut(s)	395
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	1 cut(s)	698
AdeI	CACNNNGTG	1 cut(s)	215
AfiI	CCNNNNNNNGG	5 cut(s)	436, 454, 650, 761, 1193
AgsI	TTSAA	4 cut(s)	370, 487, 587, 695
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	6 cut(s)	136, 416, 712, 849, 952, 1161
AluI	AGCT	6 cut(s)	136, 416, 712, 849, 952, 1161
Alw21I	GWGCWC	3 cut(s)	24, 1122, 1163
AlwI	GGATC	1 cut(s)	674
Ama87I	CYCGRG	2 cut(s)	451, 865
AoxI	GGCC	2 cut(s)	517, 919
ApeKI	GCWGC	8 cut(s)	61, 83, 86, 226, 356, 413, 890, 908
ApoI	RAATTY	1 cut(s)	794
AspLEI	GCGC	4 cut(s)	61, 754, 760, 1107
AsuHPI	GGTGA	4 cut(s)	95, 104, 310, 920
AvaI	CYCGRG	2 cut(s)	451, 865
BanII	GRGCYC	1 cut(s)	1163
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	3 cut(s)	24, 1122, 1163
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	8 cut(s)	48, 70, 73, 213, 343, 425, 902, 920
BccI	CCATC	6 cut(s)	117, 146, 527, 1008, 1097, 1130
BceAI	ACGGC	2 cut(s)	208, 214
BciT130I	CCWGG	1 cut(s)	762
BciVI	GTATCC	1 cut(s)	983
BclI	TGATCA	2 cut(s)	433, 925
BfaI	CTAG	2 cut(s)	554, 801
BfoI	RGCGCY	3 cut(s)	62, 755, 1108
BfuI	GTATCC	1 cut(s)	983
Bme1390I	CCNGG	1 cut(s)	762
BmeT110I	CYCGRG	2 cut(s)	451, 865
BmiI	GGNNCC	2 cut(s)	428, 642
BmrFI	CCNGG	1 cut(s)	762
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	109, 334
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	1171
Bpu10I	CCTNAGC	2 cut(s)	23, 137
BpuEI	CTTGAG	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	1134
BsaJI	CCNNGG	4 cut(s)	115, 407, 636, 761
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	5 cut(s)	436, 454, 650, 761, 1193
Bse1I	ACTGG	2 cut(s)	235, 961
Bse3DI	GCAATG	2 cut(s)	202, 785
BseBI	CCWGG	1 cut(s)	762
BseCI	ATCGAT	1 cut(s)	1134
BseDI	CCNNGG	4 cut(s)	115, 407, 636, 761
BseGI	GGATG	3 cut(s)	226, 402, 1019
BseLI	CCNNNNNNNGG	5 cut(s)	436, 454, 650, 761, 1193
BseMI	GCAATG	2 cut(s)	202, 785
BseMII	CTCAG	2 cut(s)	37, 128
BseNI	ACTGG	2 cut(s)	235, 961
BseXI	GCAGC	8 cut(s)	48, 70, 73, 213, 343, 425, 902, 920
BseYI	CCCAGC	2 cut(s)	385, 977
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	519, 921
BshVI	ATCGAT	1 cut(s)	1134
BsiHKAI	GWGCWC	3 cut(s)	24, 1122, 1163
BsiHKCI	CYCGRG	2 cut(s)	451, 865
BsiSI	CCGG	3 cut(s)	321, 564, 791
BslFI	GGGAC	3 cut(s)	23, 160, 217
BslI	CCNNNNNNNGG	5 cut(s)	436, 454, 650, 761, 1193
BsmFI	GGGAC	3 cut(s)	23, 160, 217
BsmI	GAATGC	2 cut(s)	358, 911
BsnI	GGCC	2 cut(s)	519, 921
BsoBI	CYCGRG	2 cut(s)	451, 865
Bsp1286I	GDGCHC	3 cut(s)	24, 1122, 1163
Bsp143I	GATC	4 cut(s)	285, 433, 666, 925
BspANI	GGCC	2 cut(s)	519, 921
BspCNI	CTCAG	2 cut(s)	36, 129
BspDI	ATCGAT	1 cut(s)	1134
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	428, 642
BspPI	GGATC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	1079
BsrDI	GCAATG	2 cut(s)	202, 785
BsrI	ACTGG	2 cut(s)	235, 961
BssECI	CCNNGG	4 cut(s)	115, 407, 636, 761
BssMI	GATC	4 cut(s)	285, 433, 666, 925
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	2 cut(s)	640, 1060
BstC8I	GCNNGC	3 cut(s)	734, 756, 768
BstDEI	CTNAG	3 cut(s)	23, 137, 1048
BstDSI	CCRYGG	2 cut(s)	407, 636
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstF5I	GGATG	3 cut(s)	226, 402, 1019
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	3 cut(s)	62, 755, 1108
BstHHI	GCGC	4 cut(s)	61, 754, 760, 1107
BstKTI	GATC	4 cut(s)	288, 436, 669, 928
BstMBI	GATC	4 cut(s)	285, 433, 666, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	762
BstSCI	CCNGG	1 cut(s)	760
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	8 cut(s)	48, 70, 73, 213, 343, 425, 902, 920
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	1001
Bsu15I	ATCGAT	1 cut(s)	1134
BsuI	GTATCC	1 cut(s)	983
BsuRI	GGCC	2 cut(s)	519, 921
BsuTUI	ATCGAT	1 cut(s)	1134
BtgI	CCRYGG	2 cut(s)	407, 636
BtsCI	GGATG	3 cut(s)	226, 402, 1019
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	1 cut(s)	1125
Cac8I	GCNNGC	3 cut(s)	734, 756, 768
CfoI	GCGC	4 cut(s)	61, 754, 760, 1107
ClaI	ATCGAT	1 cut(s)	1134
CseI	GACGC	1 cut(s)	384
CspCI	CAANNNNNGTGG	4 cut(s)	253, 288, 1017, 1052
CviAII	CATG	6 cut(s)	283, 431, 727, 923, 995, 1098
DdeI	CTNAG	3 cut(s)	23, 137, 1048
DpnI	GATC	4 cut(s)	287, 435, 668, 927
DpnII	GATC	4 cut(s)	285, 433, 666, 925
DraIII	CACNNNGTG	1 cut(s)	215
EciI	GGCGGA	3 cut(s)	194, 266, 308
Ecl136II	GAGCTC	1 cut(s)	1161
Eco24I	GRGCYC	1 cut(s)	1163
Eco53kI	GAGCTC	1 cut(s)	1161
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	2 cut(s)	451, 865
EcoICRI	GAGCTC	1 cut(s)	1161
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	1163
FaeI	CATG	6 cut(s)	286, 434, 730, 926, 998, 1101
FaqI	GGGAC	3 cut(s)	23, 160, 217
FatI	CATG	6 cut(s)	282, 430, 726, 922, 994, 1097
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	2 cut(s)	433, 925
FokI	GGATG	3 cut(s)	233, 389, 1026
FriOI	GRGCYC	1 cut(s)	1163
FspBI	CTAG	2 cut(s)	554, 801
GlaI	GCGC	4 cut(s)	60, 753, 759, 1106
GsaI	CCCAGC	2 cut(s)	389, 981
GsuI	CTGGAG	1 cut(s)	1171
HaeII	RGCGCY	3 cut(s)	62, 755, 1108
HaeIII	GGCC	2 cut(s)	519, 921
HapII	CCGG	3 cut(s)	321, 564, 791
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	4 cut(s)	61, 754, 760, 1107
Hin1II	CATG	6 cut(s)	286, 434, 730, 926, 998, 1101
Hin6I	GCGC	4 cut(s)	59, 752, 758, 1105
HinP1I	GCGC	4 cut(s)	59, 752, 758, 1105
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	5 cut(s)	28, 166, 304, 440, 809
HpaII	CCGG	3 cut(s)	321, 564, 791
HphI	GGTGA	4 cut(s)	95, 104, 310, 920
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	4 cut(s)	69, 253, 445, 717
Hpy188III	TCNNGA	4 cut(s)	25, 437, 451, 1150
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	4 cut(s)	452, 833, 898, 1000
HpyCH4III	ACNGT	2 cut(s)	640, 1060
HpyCH4V	TGCA	7 cut(s)	89, 172, 187, 242, 707, 770, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	23, 137, 1048
Hsp92II	CATG	6 cut(s)	286, 434, 730, 926, 998, 1101
HspAI	GCGC	4 cut(s)	59, 752, 758, 1105
Ksp22I	TGATCA	2 cut(s)	433, 925
Kzo9I	GATC	4 cut(s)	285, 433, 666, 925
LmnI	GCTCC	3 cut(s)	949, 1076, 1152
Lsp1109I	GCAGC	8 cut(s)	48, 70, 73, 213, 343, 425, 902, 920
LweI	GCATC	2 cut(s)	109, 334
MaeI	CTAG	2 cut(s)	554, 801
MalI	GATC	4 cut(s)	287, 435, 668, 927
MbiI	CCGCTC	1 cut(s)	1079
MboI	GATC	4 cut(s)	285, 433, 666, 925
MboII	GAAGA	5 cut(s)	16, 142, 307, 499, 865
MhlI	GDGCHC	3 cut(s)	24, 1122, 1163
MluCI	AATT	3 cut(s)	120, 794, 1198
MlyI	GAGTC	2 cut(s)	37, 803
MmeI	TCCRAC	3 cut(s)	423, 468, 644
MseI	TTAA	3 cut(s)	162, 507, 1062
MslI	CAYNNNNRTG	3 cut(s)	881, 933, 999
MspA1I	CMGCKG	2 cut(s)	416, 624
MspI	CCGG	3 cut(s)	321, 564, 791
MspR9I	CCNGG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	358, 911
MvaI	CCWGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	4 cut(s)	285, 433, 666, 925
NlaIII	CATG	6 cut(s)	286, 434, 730, 926, 998, 1101
NlaIV	GGNNCC	2 cut(s)	428, 642
PaeR7I	CTCGAG	1 cut(s)	451
PctI	GAATGC	2 cut(s)	358, 911
PfeI	GAWTC	3 cut(s)	166, 304, 440
PleI	GAGTC	2 cut(s)	36, 803
PpsI	GAGTC	2 cut(s)	36, 803
Psp124BI	GAGCTC	1 cut(s)	1163
Psp6I	CCWGG	1 cut(s)	760
PspFI	CCCAGC	2 cut(s)	385, 977
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	428, 642
PvuII	CAGCTG	1 cut(s)	416
RseI	CAYNNNNRTG	3 cut(s)	881, 933, 999
SacI	GAGCTC	1 cut(s)	1163
SaqAI	TTAA	3 cut(s)	162, 507, 1062
Sau3AI	GATC	4 cut(s)	285, 433, 666, 925
SchI	GAGTC	2 cut(s)	37, 803
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	3 cut(s)	24, 1122, 1163
SfaNI	GCATC	2 cut(s)	109, 334
Sfr274I	CTCGAG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	3 cut(s)	881, 933, 999
SmlI	CTYRAG	2 cut(s)	451, 501
SmoI	CTYRAG	2 cut(s)	451, 501
Sse9I	AATT	3 cut(s)	120, 794, 1198
SspI	AATATT	1 cut(s)	686
SspMI	CTAG	2 cut(s)	554, 801
SstI	GAGCTC	1 cut(s)	1163
StyD4I	CCNGG	1 cut(s)	760
TaaI	ACNGT	2 cut(s)	640, 1060
TaqI	TCGA	3 cut(s)	288, 452, 1134
TasI	AATT	3 cut(s)	120, 794, 1198
TauI	GCSGC	2 cut(s)	59, 282
TfiI	GAWTC	3 cut(s)	166, 304, 440
Tru1I	TTAA	3 cut(s)	162, 507, 1062
Tru9I	TTAA	3 cut(s)	162, 507, 1062
TscAI	CASTG	1 cut(s)	1132
TseI	GCWGC	8 cut(s)	61, 83, 86, 226, 356, 413, 890, 908
TspDTI	ATGAA	2 cut(s)	17, 482
TspRI	CASTG	1 cut(s)	1132
XagI	CCTNNNNNAGG	1 cut(s)	759
XapI	RAATTY	1 cut(s)	794
XhoI	CTCGAG	1 cut(s)	451
XspI	CTAG	2 cut(s)	554, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.