Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000124.1

Orthogroup ID

OG0007460

Physical Location & Seq

Genomic Coordinates Forward (+)

79721 .. 82130

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000124.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgggtcgtttgttcacggcggcggcgttggtggtgttgcttccgatctgggttttggcggcggcggcgaagcaccatgaagagaaacccatgaggctgaggtttgggggtgatgggcagtttaagatactgcaagtggcggacatgcactatgccgatgggaaaacgacgccgtgtgaggatgtgctgccgtcacaggtggcgggttgctctgacttaaatacgacggcgtttgttcagcggatgattcaggctgagaagcccaatttcattgttttcaccggagataacatctttgggtctgatgctacggatgctgctaaatcaatggatgcagcatttgccccagcaattgcgtccaacattccgtgggcagctgttttggggaaccatgatcaggagtcggacctttcgagggaaggggtaatgaagcacatagtcaagtataaaagcaccctggctcaactcaatccttcggatcaagatgttattgatggtttcgggaactataacctggaggtaggtggagttcaggggactggttttgaaaacaaatcggttctcaatctatacttccttgacagtggagattactccacagttccctctatccctggctatggttggatcaaaccctcccagcaattttggttccaacaaacttcagcaaagctaaagaaagcatatatgaaaaagccacaggcgcagaaatcaccggctccagggctcgcatactttcacataccgttaccagaatatgctagttttgactcatcaaacttcacaggagtgaggcaagaaggcattagctctgcctccgtgaactctggcttcttcacaaccctggttgaagcgggcgatgtaaaggcagctttcacaggccatgatcacctcaatgacttctgtgggaagctaactggcataaacctttgttatgctgggggattcggataccatgcatatggccaggcaggatgggataggagagcaagggtggtagcagcaaccttagagaaaacaaatactggaggttggggagcagtcaagtcaatcaaaacatggaaacgcctcgacgatcagcacctcagtactatcaatagtgaggttctctggaccaagagttctgcgggtgcacgtagaaagaaacccattggcggtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

387

Amino Acids

41.96

Weight (kDa)

8.19

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63140
fragaria_vesca	FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180 FvH4_7g18180
malus_domestica	MD01G1098300.v1.1 MD07G1164800.v1.1
prunus_persica	Prupe.2G203700_v2.0.a1
pyrus_communis	pycom01g11980 pycom01g12220 pycom01g12480 pycom01g12530 pycom07g16010
rosa_chinensis	RchiOBHm_Chr1g0361821
rosa_laevigata	RLG00000027701
rosa_multiflora	Rmu_ssc0000124.1_g000019
rosa_roxburghii	Rroxscaffold_4G00294680
rosa_rugosa	Rorug01G0291400
rosa_samantha	Rh1AG302100 Rh1BG264900 Rh1CG283300 Rh1DG295000
rosa_wichuraiana	Rw1G026770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	486, 635
AcoI	YGGCCR	1 cut(s)	964
AcuI	CTGAAG	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	1 cut(s)	1090
AfiI	CCNNNNNNNGG	5 cut(s)	397, 415, 620, 722, 1154
AgsI	TTSAA	2 cut(s)	548, 851
AjnI	CCWGG	6 cut(s)	456, 513, 613, 721, 843, 966
AleI	CACNNNNGTG	1 cut(s)	788
AloI	GAACNNNNNNTCC	2 cut(s)	1105, 1137
AluBI	AGCT	5 cut(s)	377, 673, 810, 872, 913
AluI	AGCT	5 cut(s)	377, 673, 810, 872, 913
Alw21I	GWGCWC	1 cut(s)	1135
Alw44I	GTGCAC	1 cut(s)	1131
AlwI	GGATC	2 cut(s)	486, 635
AoxI	GGCC	2 cut(s)	880, 964
ApaLI	GTGCAC	1 cut(s)	1131
ApeKI	GCWGC	6 cut(s)	187, 317, 335, 374, 869, 1001
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	3 cut(s)	406, 1113, 1157
AsuHPI	GGTGA	4 cut(s)	122, 271, 705, 881
AvaII	GGWCC	3 cut(s)	406, 1113, 1157
BaeGI	GKGCMC	1 cut(s)	1135
BalI	TGGCCA	1 cut(s)	966
BanII	GRGCYC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	1135
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	6 cut(s)	174, 304, 347, 386, 881, 1013
BccI	CCATC	4 cut(s)	107, 152, 488, 969
BceAI	ACGGC	4 cut(s)	33, 157, 175, 243
BciT130I	CCWGG	6 cut(s)	458, 515, 615, 723, 845, 968
BciVI	GTATCC	1 cut(s)	944
BclI	TGATCA	2 cut(s)	394, 886
BfaI	CTAG	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	944
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	6 cut(s)	458, 515, 615, 723, 845, 968
Bme18I	GGWCC	3 cut(s)	406, 1113, 1157
BmgT120I	GGNCC	3 cut(s)	406, 1113, 1157
BmiI	GGNNCC	3 cut(s)	389, 653, 720
BmrFI	CCNGG	6 cut(s)	458, 515, 615, 723, 845, 968
BmsI	GCATC	3 cut(s)	295, 304, 322
BpmI	CTGGAG	3 cut(s)	536, 705, 1047
Bpu10I	CCTNAGC	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	1136
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	5 cut(s)	368, 456, 613, 722, 843
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	5 cut(s)	397, 415, 620, 722, 1154
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	3 cut(s)	544, 922, 1030
BseBI	CCWGG	6 cut(s)	458, 515, 615, 723, 845, 968
BseDI	CCNNGG	5 cut(s)	368, 456, 613, 722, 843
BseGI	GGATG	5 cut(s)	187, 249, 319, 337, 980
BseLI	CCNNNNNNNGG	5 cut(s)	397, 415, 620, 722, 1154
BseMII	CTCAG	3 cut(s)	89, 246, 1099
BseNI	ACTGG	3 cut(s)	544, 922, 1030
BseSI	GKGCMC	1 cut(s)	1135
BseXI	GCAGC	6 cut(s)	174, 304, 347, 386, 881, 1013
BseYI	CCCAGC	3 cut(s)	346, 639, 938
BshFI	GGCC	2 cut(s)	882, 966
BsiHKAI	GWGCWC	1 cut(s)	1135
BsiSI	CCGG	2 cut(s)	282, 716
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	5 cut(s)	397, 415, 620, 722, 1154
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	882, 966
Bsp1286I	GDGCHC	2 cut(s)	729, 1135
Bsp143I	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
BspANI	GGCC	2 cut(s)	882, 966
BspCNI	CTCAG	3 cut(s)	90, 247, 1098
BspLI	GGNNCC	3 cut(s)	389, 653, 720
BspPI	GGATC	2 cut(s)	486, 635
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	3 cut(s)	544, 922, 1030
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	5 cut(s)	368, 456, 613, 722, 843
BssMI	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
BssNI	GRCGYC	1 cut(s)	170
Bst2UI	CCWGG	6 cut(s)	458, 515, 615, 723, 845, 968
Bst4CI	ACNGT	3 cut(s)	584, 601, 747
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	1136
BstC8I	GCNNGC	2 cut(s)	729, 856
BstDEI	CTNAG	4 cut(s)	98, 255, 1009, 1085
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	5 cut(s)	187, 249, 319, 337, 980
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	6 cut(s)	48, 397, 481, 630, 889, 1078
BstMBI	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 314, 341, 703
BstNI	CCWGG	6 cut(s)	458, 515, 615, 723, 845, 968
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	6 cut(s)	456, 513, 613, 721, 843, 966
BstSLI	GKGCMC	1 cut(s)	1135
BstV1I	GCAGC	6 cut(s)	174, 304, 347, 386, 881, 1013
BstXI	CCANNNNNNTGG	1 cut(s)	962
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	2 cut(s)	882, 966
BtgI	CCRYGG	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	5 cut(s)	187, 249, 319, 337, 980
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	729, 856
CfoI	GCGC	1 cut(s)	706
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	406, 1113, 1157
CseI	GACGC	2 cut(s)	178, 345
Csp6I	GTAC	1 cut(s)	1089
CviAII	CATG	7 cut(s)	77, 91, 145, 392, 884, 956, 1059
CviQI	GTAC	1 cut(s)	1089
DdeI	CTNAG	4 cut(s)	98, 255, 1009, 1085
DpnI	GATC	6 cut(s)	47, 396, 480, 629, 888, 1077
DpnII	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	729
Eco47I	GGWCC	3 cut(s)	406, 1113, 1157
Eco57I	CTGAAG	1 cut(s)	648
EcoRII	CCWGG	6 cut(s)	456, 513, 613, 721, 843, 966
EcoT22I	ATGCAT	1 cut(s)	961
EcoT38I	GRGCYC	1 cut(s)	729
FaeI	CATG	7 cut(s)	80, 94, 148, 395, 887, 959, 1062
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	7 cut(s)	76, 90, 144, 391, 883, 955, 1058
FauI	CCCGC	3 cut(s)	196, 847, 1120
FauNDI	CATATG	1 cut(s)	961
FbaI	TGATCA	2 cut(s)	394, 886
FokI	GGATG	5 cut(s)	194, 256, 326, 344, 987
FriOI	GRGCYC	1 cut(s)	729
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	1 cut(s)	705
GsaI	CCCAGC	3 cut(s)	350, 643, 942
GsuI	CTGGAG	3 cut(s)	536, 705, 1047
HaeIII	GGCC	2 cut(s)	882, 966
HapII	CCGG	2 cut(s)	282, 716
HgaI	GACGC	2 cut(s)	178, 345
HhaI	GCGC	1 cut(s)	706
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	7 cut(s)	80, 94, 148, 395, 887, 959, 1062
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HinfI	GANTC	4 cut(s)	247, 401, 770, 945
HpaII	CCGG	2 cut(s)	282, 716
HphI	GGTGA	4 cut(s)	122, 271, 705, 881
Hpy166II	GTNNAC	3 cut(s)	15, 823, 1133
Hpy188I	TCNGA	6 cut(s)	45, 214, 304, 406, 478, 950
Hpy188III	TCNNGA	4 cut(s)	398, 482, 502, 1111
Hpy8I	GTNNAC	3 cut(s)	15, 823, 1133
Hpy99I	CGWCG	3 cut(s)	172, 229, 1076
HpyAV	CCTTC	3 cut(s)	413, 483, 794
HpyCH4III	ACNGT	3 cut(s)	584, 601, 747
HpyCH4IV	ACGT	1 cut(s)	1135
HpyCH4V	TGCA	5 cut(s)	133, 148, 335, 959, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 314, 341, 703
HpyF3I	CTNAG	4 cut(s)	98, 255, 1009, 1085
HpySE526I	ACGT	1 cut(s)	1135
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	7 cut(s)	80, 94, 148, 395, 887, 959, 1062
HspAI	GCGC	1 cut(s)	704
Ksp22I	TGATCA	2 cut(s)	394, 886
Kzo9I	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
LmnI	GCTCC	2 cut(s)	724, 1037
Lsp1109I	GCAGC	6 cut(s)	174, 304, 347, 386, 881, 1013
LweI	GCATC	3 cut(s)	295, 304, 322
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	1 cut(s)	1135
MaeIII	GTNAC	2 cut(s)	192, 747
MalI	GATC	6 cut(s)	47, 396, 480, 629, 888, 1077
MboI	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
MboII	GAAGA	2 cut(s)	92, 826
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	729, 1135
MlsI	TGGCCA	1 cut(s)	966
MluCI	AATT	3 cut(s)	265, 351, 644
MluNI	TGGCCA	1 cut(s)	966
MlyI	GAGTC	2 cut(s)	410, 764
MmeI	TCCRAC	4 cut(s)	384, 384, 605, 679
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	1 cut(s)	961
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	2 cut(s)	123, 218
MslI	CAYNNNNRTG	3 cut(s)	788, 894, 960
Msp20I	TGGCCA	1 cut(s)	966
MspA1I	CMGCKG	2 cut(s)	241, 377
MspI	CCGG	2 cut(s)	282, 716
MspR9I	CCNGG	6 cut(s)	458, 515, 615, 723, 845, 968
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	6 cut(s)	458, 515, 615, 723, 845, 968
MwoI	GCNNNNNNNGC	4 cut(s)	65, 314, 341, 703
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
NlaIII	CATG	7 cut(s)	80, 94, 148, 395, 887, 959, 1062
NlaIV	GGNNCC	3 cut(s)	389, 653, 720
NmuCI	GTSAC	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	961
NspI	RCATGY	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 410
PfeI	GAWTC	2 cut(s)	247, 945
PleI	GAGTC	2 cut(s)	409, 764
PpsI	GAGTC	2 cut(s)	409, 764
Ppu21I	YACGTR	1 cut(s)	1136
Psp6I	CCWGG	6 cut(s)	456, 513, 613, 721, 843, 966
PspFI	CCCAGC	3 cut(s)	346, 639, 938
PspGI	CCWGG	6 cut(s)	456, 513, 613, 721, 843, 966
PspN4I	GGNNCC	3 cut(s)	389, 653, 720
PspPI	GGNCC	3 cut(s)	406, 1113, 1157
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	1090
RsaNI	GTAC	1 cut(s)	1089
RseI	CAYNNNNRTG	3 cut(s)	788, 894, 960
SaqAI	TTAA	2 cut(s)	123, 218
Sau3AI	GATC	6 cut(s)	45, 394, 478, 627, 886, 1075
Sau96I	GGNCC	3 cut(s)	406, 1113, 1157
ScaI	AGTACT	1 cut(s)	1090
SchI	GAGTC	2 cut(s)	410, 764
ScrFI	CCNGG	6 cut(s)	458, 515, 615, 723, 845, 968
SduI	GDGCHC	2 cut(s)	729, 1135
SfaNI	GCATC	3 cut(s)	295, 304, 322
SinI	GGWCC	3 cut(s)	406, 1113, 1157
SmiMI	CAYNNNNRTG	3 cut(s)	788, 894, 960
Sse9I	AATT	3 cut(s)	265, 351, 644
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	6 cut(s)	456, 513, 613, 721, 843, 966
TaaI	ACNGT	3 cut(s)	584, 601, 747
TaiI	ACGT	1 cut(s)	1138
TaqI	TCGA	2 cut(s)	413, 1071
TasI	AATT	3 cut(s)	265, 351, 644
TatI	WGTACW	1 cut(s)	1088
TauI	GCSGC	5 cut(s)	23, 26, 62, 65, 68
TfiI	GAWTC	2 cut(s)	247, 945
Tru1I	TTAA	2 cut(s)	123, 218
Tru9I	TTAA	2 cut(s)	123, 218
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	6 cut(s)	187, 317, 335, 374, 869, 1001
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	4 cut(s)	93, 259, 443, 704
TspGWI	ACGGA	3 cut(s)	326, 357, 808
TspRI	CASTG	1 cut(s)	589
VneI	GTGCAC	1 cut(s)	1131
VpaK11BI	GGWCC	3 cut(s)	406, 1113, 1157
XceI	RCATGY	1 cut(s)	148
XspI	CTAG	1 cut(s)	762
ZrmI	AGTACT	1 cut(s)	1090
Zsp2I	ATGCAT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.