Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Reverse (-)

20428909 .. 20431642

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATGCAGAAACTGGGCTTTTGTTCCCATATTTCCAGAACTTTTCTCAAGATTTCCAGCAGCTGGAGGAGTTCTGCAGAGGCCAAAAGTCAAATGCTCCAATGAATTGCTTCTCCGAGGCCTCGATGATCTCGGAATATGACCTGGGAGGAGAATGGGATCTGTTCAAAGCTCCAGAGCCTATCATCGAAGAACCGGCCATTGGCCTTGATCCCATGACAGCAGTCATTTCAATGATATCTAGCGGCGAAGATGTCACCTCCTCTCAAGGACTCAAGGTTGCAGACCTTGAATCACTTCAAAGCGAGCAGCTTTTGAATGATGTCTTCTATGACAAGGATCTTTTGGGGAAAGATGCGATAGGAGCACCACTTTCTGAGGCCGTAGATATCAAAATTTCTGTTTTGACAGTGGATGGAAATCATATTCAGGAAAACAAACCGCCTCGCAACGTGTCATTCCAGAAGAGTGTGAGCTCAGGATGTTTAACCTCAATGGACTGGATGCACGGAACTTCAACGAAGGCAAGTTTTCTGGATTTTCCTGGAATGGATTTGAGTGCTTATGGGATTCGTCGAGCATACAGTGAAGGTGATATTAAGACTCTCGGTAACAGTAACACAAGCCTCATCCAGTCCTCCCTAGAGCGGCCCATAGTTATCAGCAACTACAGCAGTGAGGAACGCATGGAAAAGCTTTCAAGATACCGCAACAAGAAGACAAAGAGGAACTTCGGCAGGAAAATCAAGTACGCATGCAGGAAGGCTCTTGCAGACAACCAGCCAAGGATCGATCGGGGAAGGTTTGCCAAGACCGAAGAATCGTATGCCAAGAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

281

Amino Acids

31.39

Weight (kDa)

5.33

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	229 - 272	2.4e-14	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	649
AciI	CCGC	4 cut(s)	246, 443, 649, 709
AclWI	GGATC	4 cut(s)	168, 206, 348, 797
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	3 cut(s)	64, 203, 648
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	7 cut(s)	169, 234, 293, 302, 319, 519, 702
AjnI	CCWGG	2 cut(s)	144, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	5 cut(s)	64, 173, 313, 477, 697
AluI	AGCT	5 cut(s)	64, 173, 313, 477, 697
Alw21I	GWGCWC	2 cut(s)	370, 479
AlwI	GGATC	4 cut(s)	168, 206, 348, 797
AlwNI	CAGNNNCTG	2 cut(s)	14, 64
AoxI	GGCC	6 cut(s)	82, 120, 198, 205, 381, 650
ApeKI	GCWGC	2 cut(s)	61, 310
ApoI	RAATTY	1 cut(s)	396
Asp700I	GAANNNNTTC	2 cut(s)	110, 297
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	250, 605
BanII	GRGCYC	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	319, 725
Bbv12I	GWGCWC	2 cut(s)	370, 479
BbvI	GCAGC	2 cut(s)	73, 322
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	146, 546
BfaI	CTAG	2 cut(s)	243, 644
BfmI	CTRYAG	2 cut(s)	76, 670
BisI	GCNGC	4 cut(s)	62, 247, 311, 650
BlsI	GCNGC	4 cut(s)	63, 248, 312, 651
Bme1390I	CCNGG	2 cut(s)	146, 546
BmgT120I	GGNCC	1 cut(s)	651
BmrFI	CCNGG	2 cut(s)	146, 546
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	346, 495
BmuI	ACTGGG	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	224
BpiI	GAAGAC	2 cut(s)	319, 725
BpmI	CTGGAG	2 cut(s)	86, 159
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	3 cut(s)	33, 252, 260
Bsa29I	ATCGAT	1 cut(s)	792
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	117, 145, 785
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 203, 648
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	19, 506, 634
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	146, 546
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	3 cut(s)	117, 145, 785
BseGI	GGATG	4 cut(s)	421, 488, 510, 630
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	3 cut(s)	64, 203, 648
BseMII	CTCAG	2 cut(s)	369, 492
BseNI	ACTGG	3 cut(s)	19, 506, 634
BseRI	GAGGAG	3 cut(s)	83, 165, 253
BseXI	GCAGC	2 cut(s)	73, 322
Bsh1285I	CGRYCG	1 cut(s)	796
BshFI	GGCC	6 cut(s)	84, 122, 200, 207, 383, 652
BshVI	ATCGAT	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	796
BsiHKAI	GWGCWC	2 cut(s)	370, 479
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	64, 203, 648
BsnI	GGCC	6 cut(s)	84, 122, 200, 207, 383, 652
Bsp1286I	GDGCHC	2 cut(s)	370, 479
Bsp143I	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
BspACI	CCGC	4 cut(s)	246, 443, 649, 709
BspANI	GGCC	6 cut(s)	84, 122, 200, 207, 383, 652
BspCNI	CTCAG	2 cut(s)	370, 491
BspDI	ATCGAT	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	4 cut(s)	168, 206, 348, 797
BsrBI	CCGCTC	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	19, 506, 634
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	117, 145, 785
BssMI	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	2 cut(s)	146, 546
Bst4CI	ACNGT	3 cut(s)	412, 587, 617
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	308, 757
BstDEI	CTNAG	2 cut(s)	378, 478
BstF5I	GGATG	4 cut(s)	421, 488, 510, 630
BstKTI	GATC	6 cut(s)	132, 163, 214, 343, 792, 796
BstMBI	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
BstMCI	CGRYCG	1 cut(s)	796
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 672
BstNI	CCWGG	2 cut(s)	146, 546
BstNSI	RCATGY	1 cut(s)	759
BstPAI	GACNNNNGTC	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	144, 544
BstSFI	CTRYAG	2 cut(s)	76, 670
BstV1I	GCAGC	2 cut(s)	73, 322
BstV2I	GAAGAC	2 cut(s)	319, 725
BstX2I	RGATCY	2 cut(s)	160, 340
BstYI	RGATCY	2 cut(s)	160, 340
Bsu15I	ATCGAT	1 cut(s)	792
BsuRI	GGCC	6 cut(s)	84, 122, 200, 207, 383, 652
BsuTUI	ATCGAT	1 cut(s)	792
BtsCI	GGATG	4 cut(s)	421, 488, 510, 630
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	3 cut(s)	417, 592, 682
Cac8I	GCNNGC	2 cut(s)	308, 757
CaiI	CAGNNNCTG	2 cut(s)	14, 64
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	651
ClaI	ATCGAT	1 cut(s)	792
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	3 cut(s)	217, 688, 756
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	2 cut(s)	378, 478
DpnI	GATC	6 cut(s)	131, 162, 213, 342, 791, 795
DpnII	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	785
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	479
Eco32I	GATATC	2 cut(s)	240, 391
Eco53kI	GAGCTC	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	144, 544
EcoRV	GATATC	2 cut(s)	240, 391
EcoT14I	CCWWGG	1 cut(s)	785
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	3 cut(s)	220, 691, 759
FalI	AAGNNNNNCTT	2 cut(s)	716, 748
FatI	CATG	3 cut(s)	216, 687, 755
Fnu4HI	GCNGC	4 cut(s)	62, 247, 311, 650
FokI	GGATG	4 cut(s)	428, 495, 517, 617
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	4 cut(s)	62, 247, 311, 650
FspBI	CTAG	2 cut(s)	243, 644
GluI	GCNGC	4 cut(s)	62, 247, 311, 650
GsuI	CTGGAG	2 cut(s)	86, 159
HaeIII	GGCC	6 cut(s)	84, 122, 200, 207, 383, 652
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	3 cut(s)	220, 691, 759
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	5 cut(s)	273, 293, 571, 604, 821
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	250, 605
Hpy188I	TCNGA	3 cut(s)	118, 136, 379
Hpy188III	TCNNGA	8 cut(s)	37, 50, 176, 431, 463, 480, 536, 702
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	4 cut(s)	517, 584, 757, 795
HpyCH4III	ACNGT	3 cut(s)	412, 587, 617
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	8, 78, 284, 508, 759, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 672
HpyF3I	CTNAG	2 cut(s)	378, 478
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	220, 691, 759
Kzo9I	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
LmnI	GCTCC	3 cut(s)	103, 178, 365
Lsp1109I	GCAGC	2 cut(s)	73, 322
LweI	GCATC	2 cut(s)	346, 495
MaeI	CTAG	2 cut(s)	243, 644
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	256, 611, 617
MalI	GATC	6 cut(s)	131, 162, 213, 342, 791, 795
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
MboII	GAAGA	6 cut(s)	203, 263, 319, 478, 730, 830
MflI	RGATCY	2 cut(s)	160, 340
MhlI	GDGCHC	2 cut(s)	370, 479
MluCI	AATT	2 cut(s)	106, 396
MlyI	GAGTC	2 cut(s)	267, 598
MroXI	GAANNNNTTC	2 cut(s)	110, 297
MseI	TTAA	2 cut(s)	488, 600
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	146, 546
MvaI	CCWGG	2 cut(s)	146, 546
MwoI	GCNNNNNNNGC	2 cut(s)	365, 672
NdeII	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
NlaIII	CATG	3 cut(s)	220, 691, 759
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	759
PaeI	GCATGC	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	122
PdmI	GAANNNNTTC	2 cut(s)	110, 297
PfeI	GAWTC	3 cut(s)	293, 571, 821
PflMI	CCANNNNNTGG	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	63, 248, 312, 651
Ple19I	CGATCG	1 cut(s)	796
PleI	GAGTC	2 cut(s)	267, 598
PpsI	GAGTC	2 cut(s)	267, 598
PshAI	GACNNNNGTC	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	144, 544
PspGI	CCWGG	2 cut(s)	144, 544
PspPI	GGNCC	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	80
PstNI	CAGNNNCTG	2 cut(s)	14, 64
PsuI	RGATCY	2 cut(s)	160, 340
PvuI	CGATCG	1 cut(s)	796
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	488, 600
SatI	GCNGC	4 cut(s)	62, 247, 311, 650
Sau3AI	GATC	6 cut(s)	129, 160, 211, 340, 789, 793
Sau96I	GGNCC	1 cut(s)	651
SchI	GAGTC	2 cut(s)	267, 598
ScrFI	CCNGG	2 cut(s)	146, 546
SduI	GDGCHC	2 cut(s)	370, 479
SfaNI	GCATC	2 cut(s)	346, 495
SfcI	CTRYAG	2 cut(s)	76, 670
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	3 cut(s)	48, 267, 275
SmoI	CTYRAG	3 cut(s)	48, 267, 275
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	2 cut(s)	106, 396
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	4 cut(s)	246, 443, 649, 709
SspMI	CTAG	2 cut(s)	243, 644
SstI	GAGCTC	1 cut(s)	479
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	144, 544
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	3 cut(s)	412, 587, 617
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	4 cut(s)	125, 189, 577, 792
TaqII	GACCGA	1 cut(s)	830
TasI	AATT	2 cut(s)	106, 396
TauI	GCSGC	2 cut(s)	249, 652
TfiI	GAWTC	3 cut(s)	293, 571, 821
Tru1I	TTAA	2 cut(s)	488, 600
Tru9I	TTAA	2 cut(s)	488, 600
TscAI	CASTG	3 cut(s)	417, 592, 682
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	61, 310
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	3 cut(s)	417, 592, 682
Van91I	CCANNNNNTGG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	759
XmnI	GAANNNNTTC	2 cut(s)	110, 297
XspI	CTAG	2 cut(s)	243, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.