Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

8088080 .. 8089913

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGCTTTGGAGGATTCGCTGGTGAATTCCAAGCTCTCTCCCCCGAATACATTCGGAGCCGTCGTTCTCGGCGGCACCTTCGACCGATTACACGACGGCCATCGCCTGTTTCTCAAGGCGGCGGCGGAGCTGGCAAGGGATCGGATTGTGGTCGGAATTTGCGACGGACCCATGTTGACTAACAAGCAGTTTGCTGATCTGATACAACCCCTTGAAGAAAGGAAGCGTAGTGTTGAGAATTTCATCAAGTCTATCAAGCCTGGGCTGGTAGTGCAAGCTGAACCTATTATGGACCCGTATGGCCCCTCAATAGTTGATGAGAATCTGGAGGCAATTGTTGTCAGCAAGGAGACTTTACCAGGTGGACTGTCTGTCAATAAGAAGAGAGTTGACCGAGGCCTGTCACAACTTAAGATTGAAGTTGTAGATTTAGTTTCTGAAGAATCTAGTGGAGATAAGCTAAGTTCAACAACATTAAGGAAGCTTGAGGCGGAGAAGGCCAAGAACCAACAGCCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004595 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006140 GO:0006163 GO:0006164 GO:0006629 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010876 GO:0015936 GO:0015937 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019915 GO:0030808 GO:0031323 GO:0031326 GO:0033036 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0040007 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051186 GO:0051188 GO:0051193 GO:0051196 GO:0051235 GO:0055086 GO:0062012 GO:0065007 GO:0065008 GO:0070566 GO:0071704 GO:0072521 GO:0072522 GO:0080020 GO:0080090 GO:0090407 GO:1900371 GO:1900542 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

175

Amino Acids

18.95

Weight (kDa)

5.78

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	4.7e-11	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	6 cut(s)	5, 75, 122, 125, 128, 494
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	28, 159, 241
AcuI	CTGAAG	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	218, 422, 471
AhdI	GACNNNNNGTC	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	262, 361
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	5 cut(s)	37, 133, 281, 463, 487
AluI	AGCT	5 cut(s)	37, 133, 281, 463, 487
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	4 cut(s)	100, 304, 400, 501
ApoI	RAATTY	3 cut(s)	28, 159, 241
Asp700I	GAANNNNTTC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	170, 295, 305
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	170, 295
BanI	GGYRCC	1 cut(s)	77
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	2 cut(s)	47, 115
BciT130I	CCWGG	2 cut(s)	264, 363
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	4 cut(s)	6, 76, 123, 126
BlsI	GCNGC	4 cut(s)	7, 77, 124, 127
Bme1390I	CCNGG	2 cut(s)	264, 363
Bme18I	GGWCC	2 cut(s)	170, 295
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	170, 295, 305
BmiI	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
BmrFI	CCNGG	2 cut(s)	264, 363
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	101, 509
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	263, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	264, 363
BseDI	CCNNGG	2 cut(s)	263, 397
BseJI	GATNNNNATC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	102, 306, 402, 503
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	4 cut(s)	102, 306, 402, 503
Bsp143I	GATC	2 cut(s)	142, 199
BspACI	CCGC	6 cut(s)	5, 75, 122, 125, 128, 494
BspANI	GGCC	4 cut(s)	102, 306, 402, 503
BspLI	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	263, 397
BssMI	GATC	2 cut(s)	142, 199
Bst2UI	CCWGG	2 cut(s)	264, 363
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	135, 279
BstDEI	CTNAG	1 cut(s)	464
BstKTI	GATC	2 cut(s)	145, 202
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	142, 199
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 274, 500
BstNI	CCWGG	2 cut(s)	264, 363
BstSCI	CCNGG	2 cut(s)	262, 361
BsuRI	GGCC	4 cut(s)	102, 306, 402, 503
BtgZI	GCGATG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	135, 279
Cfr13I	GGNCC	3 cut(s)	170, 295, 305
CsiI	ACCWGGT	1 cut(s)	361
CviAII	CATG	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	144, 201
DpnII	GATC	2 cut(s)	142, 199
DriI	GACNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	380
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	2 cut(s)	143, 509
Eco147I	AGGCCT	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	170, 295
Eco57I	CTGAAG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	262, 361
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	176, 293, 303, 523
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	6, 76, 123, 126
Fsp4HI	GCNGC	4 cut(s)	6, 76, 123, 126
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	4 cut(s)	6, 76, 123, 126
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	4 cut(s)	102, 306, 402, 503
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	180, 394
HindII	GTYRAC	2 cut(s)	180, 394
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	17, 325, 446
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	180, 368, 394
Hpy188I	TCNGA	5 cut(s)	59, 147, 158, 204, 442
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	3 cut(s)	180, 368, 394
Hpy99I	CGWCG	3 cut(s)	68, 101, 170
HpyAV	CCTTC	2 cut(s)	91, 493
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 274, 500
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	142, 199
LmnI	GCTCC	2 cut(s)	59, 130
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	2 cut(s)	144, 201
MboI	GATC	2 cut(s)	142, 199
MboII	GAAGA	3 cut(s)	230, 397, 455
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	4 cut(s)	28, 159, 241, 336
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	5 cut(s)	7, 319, 325, 392, 484
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	414, 479
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	264, 363
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	264, 363
MwoI	GCNNNNNNNGC	3 cut(s)	134, 274, 500
NdeII	GATC	2 cut(s)	142, 199
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 162
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	17, 325, 446
PkrI	GCNGC	4 cut(s)	7, 77, 124, 127
Psp6I	CCWGG	2 cut(s)	262, 361
PspGI	CCWGG	2 cut(s)	262, 361
PspN4I	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
PspPI	GGNCC	3 cut(s)	170, 295, 305
SaqAI	TTAA	2 cut(s)	414, 479
SatI	GCNGC	4 cut(s)	6, 76, 123, 126
Sau3AI	GATC	2 cut(s)	142, 199
Sau96I	GGNCC	3 cut(s)	170, 295, 305
ScrFI	CCNGG	2 cut(s)	264, 363
SetI	ASST	8 cut(s)	39, 83, 135, 283, 289, 367, 465, 489
SexAI	ACCWGGT	1 cut(s)	361
SinI	GGWCC	2 cut(s)	170, 295
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
Sse9I	AATT	4 cut(s)	28, 159, 241, 336
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	6 cut(s)	5, 75, 122, 125, 128, 494
SspMI	CTAG	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	262, 361
TaaI	ACNGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	84
TaqII	GACCGA	2 cut(s)	102, 411
TasI	AATT	4 cut(s)	28, 159, 241, 336
TauI	GCSGC	4 cut(s)	8, 78, 125, 128
TfiI	GAWTC	3 cut(s)	17, 325, 446
Tru1I	TTAA	2 cut(s)	414, 479
Tru9I	TTAA	2 cut(s)	414, 479
TseFI	GTSAC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	183
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	170, 295
XapI	RAATTY	3 cut(s)	28, 159, 241
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.