Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Forward (+)

18577235 .. 18578518

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCCTCTCACCTATATTCACCGACTAGAGAGATTTGGATTGGAACACGAACTCAACTACCAATCATCTACTTCCAAATAGACAGGAAAACAAAGAGACACACATCAATAATCCACCCTCCCCTCTCCTCTCCTACGTTGCTTCCCTTTTCCTCCAAACTCTCATTTTTTTTCTCAATTTTTTCTCTTTTATTTTTTTTATTTTTTTTCGTTTTTTCTCCTTTTTCTTTAACCCCCCCCACACACACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGAAACATTATATTAAAGAACTAGGGTTATTGAGTTTTTTTGGTCATATGGGCTCTGCAAGAAACCAAAATCAATGGGCACCATATGACTCATACAAAGATTGTTCCCAAGGGATTTGCAGTATCTACTGCTCTAAATGGTGCAATATCATTGGCCCCCCACCTCCTTCACTCGATTTCACCGAAGCCGATGACCAAAACCACGACTCTCCAACAGATCTTTCTCCTCTCATTATAGCAATCATTGGCATCTTTGCTAGTGCCTTCATTCTAGTCACTTACTACACCGTCATATCCAAATACCGCAGGCAAAGAGGAAGCGATGGAGCTCAAGACATGAATATGGACAGTTCGAATCCAAACCTAGTTAGTGAATCGAGGCAAGGCTCAAATAACGGTCTGGATGAGTCCCTGATCAAGTCCATCATGGTTCACAAGTACAAGAAAGGTGATAAGCTTGTGGAAGGCACAGACTGCTCGGTATGCTTAAGTGAGTTTGAAGAAAATGAGAGCCTGAGGCTGTTGCCGAAATGTAGCCATGCTTTCCATGTTCCTTGCATTGATACTTGGCTCAAATCTCACTCCAGTTGTCCACTGTGTCGTTCAAACATTGCTGCCCCTGCCATTGCTCTAGTTCCTCATCAGCAACTAGCGCTGCCTCCGGTCGAAGAAAATCCACAGGAGGAGGTGAATGTGTCCGCTTCGGAATACCAACATAGGAGTAATGAAAATATTTTGGTGGTTCAAGATAATTCGGAAGAGGTTGTTAGTCAGTTGCAGAGTAGAGTGAGTAGTTGTGAGATTGAACAAGATCGATGGGATCCAGCAGCAGTTGAGGAGATCAGTTTCCATTGCCGATGTGTTGCATTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

386

Amino Acids

43.39

Weight (kDa)

5.91

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	252 - 295	1.7e-14	Ring finger domain
zf-RING_11	PF17123	252 - 281	1.8e-11	RING-like zinc finger
zf-rbx1	PF12678	253 - 295	7.2e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	253 - 294	9.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	253 - 294	4.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	268 - 298	9.2e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	2 cut(s)	586, 981
AclWI	GGATC	2 cut(s)	1097, 1110
AfaI	GTAC	1 cut(s)	722
AfeI	AGCGCT	1 cut(s)	936
AflII	CTTAAG	1 cut(s)	769
AgsI	TTSAA	4 cut(s)	782, 888, 1028, 1088
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	2 cut(s)	611, 739
AluI	AGCT	2 cut(s)	611, 739
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	1097, 1110
Aor51HI	AGCGCT	1 cut(s)	936
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	3 cut(s)	896, 937, 1109
AspLEI	GCGC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	4 cut(s)	12, 454, 743, 982
AsuII	TTCGAA	1 cut(s)	635
AxyI	CCTNAGG	1 cut(s)	797
BaeGI	GKGCMC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	1102
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	338, 613
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	3 cut(s)	883, 924, 1121
BccI	CCATC	3 cut(s)	599, 713, 1092
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	7 cut(s)	27, 305, 540, 554, 647, 914, 932
BfoI	RGCGCY	1 cut(s)	938
BfrI	CTTAAG	1 cut(s)	769
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	3 cut(s)	897, 938, 1110
BlsI	GCNGC	3 cut(s)	898, 939, 1111
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	363, 439, 1104
BmsI	GCATC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	850
Bpu14I	TTCGAA	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	1096
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	943
Bse1I	ACTGG	1 cut(s)	867
Bse21I	CCTNAGG	1 cut(s)	797
Bse3DI	GCAATG	3 cut(s)	891, 906, 1132
BseCI	ATCGAT	1 cut(s)	1096
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	691
BseMI	GCAATG	3 cut(s)	891, 906, 1132
BseMII	CTCAG	2 cut(s)	295, 788
BseNI	ACTGG	1 cut(s)	867
BseRI	GAGGAG	4 cut(s)	118, 498, 980, 1133
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	883, 924, 1121
Bsh1285I	CGRYCG	1 cut(s)	948
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	1096
BsiEI	CGRYCG	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	676
BsnI	GGCC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1286I	GDGCHC	3 cut(s)	338, 364, 613
Bsp143I	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
BspACI	CCGC	2 cut(s)	586, 981
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	294, 789
BspDI	ATCGAT	1 cut(s)	1096
BspLI	GGNNCC	3 cut(s)	363, 439, 1104
BspPI	GGATC	2 cut(s)	1097, 1110
BspT104I	TTCGAA	1 cut(s)	635
BspT107I	GGYRCC	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	769
BsrDI	GCAATG	3 cut(s)	891, 906, 1132
BsrI	ACTGG	1 cut(s)	867
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	4 cut(s)	571, 632, 680, 879
Bst6I	CTCTTC	1 cut(s)	1035
BstAFI	CTTAAG	1 cut(s)	769
BstAPI	GCANNNNNTGC	1 cut(s)	756
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	281, 797
BstF5I	GGATG	1 cut(s)	691
BstH2I	RGCGCY	1 cut(s)	938
BstHHI	GCGC	1 cut(s)	937
BstKTI	GATC	5 cut(s)	502, 699, 1096, 1105, 1125
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
BstMCI	CGRYCG	1 cut(s)	948
BstMWI	GCNNNNNNNGC	4 cut(s)	756, 765, 902, 934
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	883, 924, 1121
BstX2I	RGATCY	2 cut(s)	499, 1102
BstYI	RGATCY	2 cut(s)	499, 1102
Bsu15I	ATCGAT	1 cut(s)	1096
Bsu36I	CCTNAGG	1 cut(s)	797
BsuRI	GGCC	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	1096
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	875
Cac8I	GCNNGC	1 cut(s)	590
CfoI	GCGC	1 cut(s)	937
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	1096
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	5 cut(s)	619, 709, 821, 830, 1155
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	2 cut(s)	281, 797
DpnI	GATC	5 cut(s)	501, 698, 1095, 1104, 1124
DpnII	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Ecl136II	GAGCTC	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	2 cut(s)	338, 613
Eco47III	AGCGCT	1 cut(s)	936
Eco53kI	GAGCTC	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	2 cut(s)	338, 613
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	5 cut(s)	622, 712, 824, 833, 1158
FaqI	GGGAC	1 cut(s)	676
FatI	CATG	5 cut(s)	618, 708, 820, 829, 1154
FauNDI	CATATG	2 cut(s)	330, 367
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	3 cut(s)	897, 938, 1110
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	2 cut(s)	338, 613
Fsp4HI	GCNGC	3 cut(s)	897, 938, 1110
FspBI	CTAG	7 cut(s)	27, 305, 540, 554, 647, 914, 932
GlaI	GCGC	1 cut(s)	936
GluI	GCNGC	3 cut(s)	897, 938, 1110
GsuI	CTGGAG	1 cut(s)	850
HaeII	RGCGCY	1 cut(s)	938
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	1 cut(s)	944
HhaI	GCGC	1 cut(s)	937
Hin1II	CATG	5 cut(s)	622, 712, 824, 833, 1158
Hin6I	GCGC	1 cut(s)	935
HinP1I	GCGC	1 cut(s)	935
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	5 cut(s)	371, 488, 637, 656, 689
HpaII	CCGG	1 cut(s)	944
HphI	GGTGA	4 cut(s)	12, 454, 743, 982
Hpy166II	GTNNAC	2 cut(s)	715, 875
Hpy188I	TCNGA	2 cut(s)	988, 1039
Hpy188III	TCNNGA	4 cut(s)	283, 614, 683, 1028
Hpy8I	GTNNAC	2 cut(s)	715, 875
HpyAV	CCTTC	3 cut(s)	459, 556, 740
HpyCH4III	ACNGT	4 cut(s)	571, 632, 680, 879
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	7 cut(s)	341, 402, 426, 840, 1060, 1148, 1154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	756, 765, 902, 934
HpyF3I	CTNAG	2 cut(s)	281, 797
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	622, 712, 824, 833, 1158
HspAI	GCGC	1 cut(s)	935
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
LmnI	GCTCC	1 cut(s)	608
Lsp1109I	GCAGC	3 cut(s)	883, 924, 1121
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	7 cut(s)	27, 305, 540, 554, 647, 914, 932
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	5 cut(s)	501, 698, 1095, 1104, 1124
MboI	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
MboII	GAAGA	3 cut(s)	794, 962, 1052
MflI	RGATCY	2 cut(s)	499, 1102
MhlI	GDGCHC	3 cut(s)	338, 364, 613
MluCI	AATT	2 cut(s)	177, 1033
MlyI	GAGTC	3 cut(s)	365, 482, 698
MmeI	TCCRAC	1 cut(s)	518
MseI	TTAA	3 cut(s)	230, 297, 770
MslI	CAYNNNNRTG	2 cut(s)	623, 1153
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	1 cut(s)	944
MwoI	GCNNNNNNNGC	4 cut(s)	756, 765, 902, 934
NdeI	CATATG	2 cut(s)	330, 367
NdeII	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
NlaIII	CATG	5 cut(s)	622, 712, 824, 833, 1158
NlaIV	GGNNCC	3 cut(s)	363, 439, 1104
NmuCI	GTSAC	1 cut(s)	556
NspV	TTCGAA	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	637, 656
PkrI	GCNGC	3 cut(s)	898, 939, 1111
PleI	GAGTC	3 cut(s)	365, 482, 697
PpsI	GAGTC	3 cut(s)	365, 482, 697
Psp124BI	GAGCTC	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	363, 439, 1104
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	499, 1102
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	623, 1153
SacI	GAGCTC	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	230, 297, 770
SatI	GCNGC	3 cut(s)	897, 938, 1110
Sau3AI	GATC	5 cut(s)	499, 696, 1093, 1102, 1122
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	3 cut(s)	365, 482, 698
SduI	GDGCHC	3 cut(s)	338, 364, 613
SetI	ASST	9 cut(s)	15, 140, 448, 613, 648, 733, 741, 972, 1047
SfaNI	GCATC	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	623, 1153
SmlI	CTYRAG	2 cut(s)	612, 769
SmoI	CTYRAG	2 cut(s)	612, 769
Sse9I	AATT	2 cut(s)	177, 1033
SsiI	CCGC	2 cut(s)	586, 981
SspI	AATATT	1 cut(s)	1015
SspMI	CTAG	7 cut(s)	27, 305, 540, 554, 647, 914, 932
SstI	GAGCTC	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	4 cut(s)	571, 632, 680, 879
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	5 cut(s)	456, 635, 659, 948, 1096
TasI	AATT	2 cut(s)	177, 1033
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	2 cut(s)	637, 656
Tru1I	TTAA	3 cut(s)	230, 297, 770
Tru9I	TTAA	3 cut(s)	230, 297, 770
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	3 cut(s)	896, 937, 1109
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	538, 635, 1023
TspRI	CASTG	1 cut(s)	882
Vha464I	CTTAAG	1 cut(s)	769
XspI	CTAG	7 cut(s)	27, 305, 540, 554, 647, 914, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.