pycom02g23430

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011860
Physical Location & Seq
Forward (+)
21531158 .. 21535556
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGAGGAAGAAGCTCGATACGCGTTTCCCTGCCGCCCGGATTAAAAAGATTATGCAAGCTGATGAGGATGTTGGGAAGATAGCATTAGCGGTGCCTGTTTTAGTGTCAAAAGCGTTGGAGCTATTTTTGCAAGACCTTTGTGACCGTACCTATGAGATAACCCTCCAAAGAGGAGCTAAAACCATGAACTCACTGCATCTAAAGCATTGTGTACAGAACTATAATGTGTTTGATTTTCTGAGGGACATTGTCAGCAGAGTTCCGGACTATGGTCATGGTCACTCTGATGCTGCTGCTGATGACCGAACCATTTCAAAAAGAAGAAAACCACCAGGTGATGAATGCAATGACAGTGATGAAGAATTGAAGAGGAGCAAGATGCTTGAGATAAACCATGGCAGCAGCAGTGGCAGAGGAAGAGGCCGGGGTCGGGGACGAGGCCGTGGACGTGGTCGGACAGCTGAAAAAGAGATTTCACACCATGAGACTGAATCTGAACCCTGCACATCTCTTCAGCAGACCATTAAACCTAATCCAAACCCTGGAATGGTGGTGGATGATGTTTCTGAGTCGAAGGATGCATTGAAGGAAAATGTCACTGTCCCTGATGAAACTGATCCTGCAGTTCGAAATTTTGATCTGAATACTGATGTAAATGATAGTGAGGACACAAAAGCTGCAGCAACAGCAGCCCAAGCTGCAGCAACGGCAGCCCCAGCAGCATCCCAAGCAGCCCCAGCGGCATCCCAATCAGCTCCAGCGGCATCCCAATCAGCCCCAGTGGCATCCCAAGTTGCCCCAACGGCAGCCCAAGCCTCATCAGCTGGACCTATTGCCGAGCCTAAACATGAAGAATATCCTGGGTGGTCTCCTGCTGATGTGAATAGAATGGCCATTGATCCTCTTCAACTTGCAAATCTGAGCAGAAGGCTAGACGAGGATGAAGAAGATTACGACGAAGAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

323

Amino Acids

34.83

Weight (kDa)

5.23

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2.8e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccB7I CCANNNNNTGG 1 cut(s) 542
AccII CGCG 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 4 cut(s) 33, 89, 740, 761
AclWI GGATC 2 cut(s) 611, 893
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 4 cut(s) 315, 367, 586, 908
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 331, 541, 859
AluBI AGCT 9 cut(s) 13, 59, 121, 176, 461, 677, 698, 755, 824
AluI AGCT 9 cut(s) 13, 59, 121, 176, 461, 677, 698, 755, 824
Alw26I GTCTC 2 cut(s) 479, 873
AlwI GGATC 2 cut(s) 611, 893
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 3 cut(s) 421, 439, 891
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 827
AsuC2I CCSGG 2 cut(s) 37, 425
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 827
BalI TGGCCA 1 cut(s) 893
BanI GGYRCC 1 cut(s) 91
BceAI ACGGC 3 cut(s) 426, 723, 819
BciT130I CCWGG 3 cut(s) 333, 543, 861
BcnI CCSGG 2 cut(s) 37, 425
BcoDI GTCTC 2 cut(s) 479, 873
BfaI CTAG 1 cut(s) 932
BfmI CTRYAG 3 cut(s) 621, 678, 699
BglI GCCNNNNNGGC 3 cut(s) 740, 782, 803
Bme1390I CCNGG 5 cut(s) 37, 333, 425, 543, 861
Bme18I GGWCC 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 827
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 5 cut(s) 37, 333, 425, 543, 861
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 8 cut(s) 205, 277, 369, 568, 731, 752, 773, 794
BmuI ACTGGG 1 cut(s) 773
BoxI GACNNNNGTC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 37, 425
BsaI GGTCTC 1 cut(s) 873
BsaJI CCNNGG 5 cut(s) 394, 424, 442, 541, 860
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
Bse1I ACTGG 1 cut(s) 779
Bse3DI GCAATG 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 3 cut(s) 333, 543, 861
BseDI CCNNGG 5 cut(s) 394, 424, 442, 541, 860
BseGI GGATG 8 cut(s) 73, 562, 583, 722, 743, 764, 785, 946
BseLI CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 230, 558, 911
BseNI ACTGG 1 cut(s) 779
BseRI GAGGAG 2 cut(s) 186, 385
BseYI CCCAGC 2 cut(s) 715, 736
BsgI GTGCAG 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 423, 441, 893
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 3 cut(s) 37, 263, 424
BslFI GGGAC 3 cut(s) 257, 447, 587
BslI CCNNNNNNNGG 4 cut(s) 269, 430, 542, 547
BsmAI GTCTC 2 cut(s) 479, 873
BsmFI GGGAC 3 cut(s) 257, 447, 587
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 423, 441, 893
Bso31I GGTCTC 1 cut(s) 873
Bsp119I TTCGAA 1 cut(s) 628
Bsp13I TCCGGA 1 cut(s) 262
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 616, 637, 898
Bsp19I CCATGG 1 cut(s) 394
BspACI CCGC 4 cut(s) 33, 89, 740, 761
BspANI GGCC 3 cut(s) 423, 441, 893
BspCNI CTCAG 3 cut(s) 231, 559, 912
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 3 cut(s) 625, 682, 703
BspPI GGATC 2 cut(s) 611, 893
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 873
BsrDI GCAATG 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 779
BssECI CCNNGG 5 cut(s) 394, 424, 442, 541, 860
BssMI GATC 3 cut(s) 616, 637, 898
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 333, 543, 861
Bst4CI ACNGT 3 cut(s) 146, 353, 601
Bst6I CTCTTC 5 cut(s) 362, 412, 516, 909, 954
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 3 cut(s) 239, 567, 920
BstDSI CCRYGG 2 cut(s) 394, 442
BstF5I GGATG 8 cut(s) 73, 562, 583, 722, 743, 764, 785, 946
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 3 cut(s) 619, 640, 901
BstMAI GTCTC 2 cut(s) 479, 873
BstMBI GATC 3 cut(s) 616, 637, 898
BstNI CCWGG 3 cut(s) 333, 543, 861
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 5 cut(s) 35, 331, 423, 541, 859
BstSFI CTRYAG 3 cut(s) 621, 678, 699
BstUI CGCG 1 cut(s) 22
BsuRI GGCC 3 cut(s) 423, 441, 893
BtgI CCRYGG 2 cut(s) 394, 442
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 8 cut(s) 73, 562, 583, 722, 743, 764, 785, 946
BtsI GCAGTG 2 cut(s) 191, 412
BtsIMutI CAGTG 5 cut(s) 191, 358, 412, 597, 786
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 827
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 5 cut(s) 184, 275, 395, 482, 848
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 3 cut(s) 239, 567, 920
DpnI GATC 3 cut(s) 618, 639, 900
DpnII GATC 3 cut(s) 616, 637, 898
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 5 cut(s) 362, 412, 516, 909, 954
EarI CTCTTC 5 cut(s) 362, 412, 516, 909, 954
Eco130I CCWWGG 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 827
Eco57I CTGAAG 1 cut(s) 497
EcoRII CCWGG 3 cut(s) 331, 541, 859
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 5 cut(s) 187, 278, 398, 485, 851
FaiI YATR 9 cut(s) 53, 153, 185, 222, 270, 276, 396, 483, 849
FaqI GGGAC 3 cut(s) 257, 447, 587
FatI CATG 5 cut(s) 183, 274, 394, 481, 847
FokI GGATG 8 cut(s) 80, 569, 590, 709, 730, 751, 772, 953
FspBI CTAG 1 cut(s) 932
GsaI CCCAGC 2 cut(s) 719, 740
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 3 cut(s) 423, 441, 893
HapII CCGG 3 cut(s) 37, 263, 424
Hin1II CATG 5 cut(s) 187, 278, 398, 485, 851
HinfI GANTC 2 cut(s) 491, 569
HpaII CCGG 3 cut(s) 37, 263, 424
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 212, 446
Hpy188I TCNGA 7 cut(s) 240, 286, 456, 496, 568, 642, 921
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 212, 446
Hpy99I CGWCG 1 cut(s) 959
HpyAV CCTTC 3 cut(s) 568, 580, 921
HpyCH4III ACNGT 3 cut(s) 146, 353, 601
HpyCH4IV ACGT 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 239, 567, 920
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 5 cut(s) 187, 278, 398, 485, 851
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 616, 637, 898
LmnI GCTCC 4 cut(s) 118, 173, 372, 760
LweI GCATC 8 cut(s) 205, 277, 369, 568, 731, 752, 773, 794
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 932
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 3 cut(s) 140, 278, 595
MalI GATC 3 cut(s) 618, 639, 900
MboI GATC 3 cut(s) 616, 637, 898
MlsI TGGCCA 1 cut(s) 893
MluCI AATT 2 cut(s) 362, 631
MluI ACGCGT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 96, 434
Mox20I TGGCCA 1 cut(s) 893
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 893
MseI TTAA 2 cut(s) 42, 525
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 893
MspA1I CMGCKG 4 cut(s) 461, 740, 761, 824
MspI CCGG 3 cut(s) 37, 263, 424
MspR9I CCNGG 5 cut(s) 37, 333, 425, 543, 861
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 333, 543, 861
MvnI CGCG 1 cut(s) 22
NciI CCSGG 2 cut(s) 37, 425
NcoI CCATGG 1 cut(s) 394
NdeII GATC 3 cut(s) 616, 637, 898
NlaIII CATG 5 cut(s) 187, 278, 398, 485, 851
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 3 cut(s) 140, 278, 595
NsiI ATGCAT 1 cut(s) 583
NspV TTCGAA 1 cut(s) 628
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 491
PflFI GACNNNGTC 2 cut(s) 248, 450
PflMI CCANNNNNTGG 1 cut(s) 542
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 3 cut(s) 331, 541, 859
PspFI CCCAGC 2 cut(s) 715, 736
PspGI CCWGG 3 cut(s) 331, 541, 859
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 827
PstI CTGCAG 3 cut(s) 625, 682, 703
PsyI GACNNNGTC 2 cut(s) 248, 450
PvuII CAGCTG 2 cut(s) 461, 824
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 42, 525
Sau3AI GATC 3 cut(s) 616, 637, 898
Sau96I GGNCC 1 cut(s) 827
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 37, 333, 425, 543, 861
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 8 cut(s) 205, 277, 369, 568, 731, 752, 773, 794
SfcI CTRYAG 3 cut(s) 621, 678, 699
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 1 cut(s) 827
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 362, 631
SsiI CCGC 4 cut(s) 33, 89, 740, 761
SspMI CTAG 1 cut(s) 932
StyD4I CCNGG 5 cut(s) 35, 331, 423, 541, 859
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 146, 353, 601
TaiI ACGT 1 cut(s) 451
TaqI TCGA 3 cut(s) 15, 572, 628
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 362, 631
TatI WGTACW 1 cut(s) 211
TauI GCSGC 3 cut(s) 35, 743, 764
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 2 cut(s) 42, 525
Tru9I TTAA 2 cut(s) 42, 525
TscAI CASTG 5 cut(s) 198, 358, 412, 604, 786
TseFI GTSAC 3 cut(s) 140, 278, 595
Tsp45I GTSAC 3 cut(s) 140, 278, 595
TspDTI ATGAA 6 cut(s) 200, 354, 372, 624, 864, 957
TspRI CASTG 5 cut(s) 198, 358, 412, 604, 786
Tth111I GACNNNGTC 2 cut(s) 248, 450
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 1 cut(s) 932
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.