Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005048

Physical Location & Seq

Genomic Coordinates Forward (+)

21946370 .. 21946675

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCCAGAGATAAGCAAGCGGCAGTGCTTAATGCACTTGACGTTGCCAAGACCCAATGGTACCATTTCACAGCAATCATCATAGCCGGAATGGGATTTTTCACAGACGCCTACGATCTCTTCTCCATCTCCTTCGTCATCAAGCTCCTCGGTCGTATATACTACACGAAGCAAGGCGCAGCAAAGCCCGGCACGTTGCCTCCCAACGTCTCCGCCGCTGTAAGCGGCGTTGCCCTCTGCGGCACTTTGGCCGGACAACTCTGCTTTGGATGGCTTGGTGACAAGTTAGGCCGGAAGACGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015114 GO:0015291 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0016036 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0035435 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

102

Amino Acids

10.77

Weight (kDa)

9.47

Isoelectric Point (pI)

16.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76430
fragaria_vesca	FvH4_5g25990
malus_domestica	MD06G1004700.v1.1
prunus_persica	Prupe.5G006100_v2.0.a1
pyrus_communis	pycom02g23840 pycom06g00430
rosa_chinensis	RchiOBHm_Chr7g0216571 RchiOBHm_Chr7g0216601 RchiOBHm_Chr7g0216611
rosa_laevigata	RLG00000002554 RLG00000002559 RLG00000002561 RLG00000002563
rosa_multiflora	Rmu_co7979128.1_g000001 Rmu_sc0014840.1_g000003 Rmu_sc0016363.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243070 Rroxscaffold_3G00243100 Rroxscaffold_5G00337960
rosa_rugosa	Rorug07G0160800 Rorug07G0160900
rosa_samantha	Rh7AG300600 Rh7AG301000 Rh7BG292100 Rh7BG292500 Rh7CG319000 Rh7CG319600 Rh7DG301600
rosa_wichuraiana	Rw7G025530 Rw7G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	5 cut(s)	20, 213, 216, 225, 240
AcoI	YGGCCR	2 cut(s)	3, 249
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	214
AoxI	GGCC	3 cut(s)	3, 249, 289
ApeKI	GCWGC	1 cut(s)	179
Asp718I	GGTACC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	134, 264
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	214
BisI	GCNGC	5 cut(s)	21, 180, 216, 226, 241
BlsI	GCNGC	5 cut(s)	22, 181, 217, 227, 242
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	5, 251, 291
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	87, 189, 252, 292
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	5, 251, 291
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	5 cut(s)	20, 213, 216, 225, 240
BspANI	GGCC	3 cut(s)	5, 251, 291
BspLI	GGNNCC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	115
BssNI	GRCGYC	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	115
BstMCI	CGRYCG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	5, 251, 291
BtsCI	GGATG	1 cut(s)	275
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	179
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	7 cut(s)	5, 86, 145, 187, 251, 274, 291
CviKI_1	RGCY	7 cut(s)	5, 86, 145, 187, 251, 274, 291
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	3, 249
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	214
FaiI	YATR	4 cut(s)	83, 158, 160, 304
Fnu4HI	GCNGC	5 cut(s)	21, 180, 216, 226, 241
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	5 cut(s)	21, 180, 216, 226, 241
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	5 cut(s)	21, 180, 216, 226, 241
HaeIII	GGCC	3 cut(s)	5, 251, 291
HapII	CCGG	4 cut(s)	87, 189, 252, 292
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HpaII	CCGG	4 cut(s)	87, 189, 252, 292
HphI	GGTGA	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	142
HpyCH4IV	ACGT	3 cut(s)	42, 194, 207
HpyCH4V	TGCA	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	42, 194, 207
Hsp92I	GRCGYC	1 cut(s)	108
HspAI	GCGC	1 cut(s)	177
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	4 cut(s)	19, 100, 202, 265
Lsp1109I	GCAGC	1 cut(s)	191
MaeII	ACGT	3 cut(s)	42, 194, 207
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	158, 210, 245
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	4 cut(s)	87, 189, 252, 292
MspR9I	CCNGG	1 cut(s)	189
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	22, 181, 217, 227, 242
PspN4I	GGNNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	21, 180, 216, 226, 241
Sau3AI	GATC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	4 cut(s)	45, 147, 197, 210
SsiI	CCGC	5 cut(s)	20, 213, 216, 225, 240
StyD4I	CCNGG	1 cut(s)	187
TaiI	ACGT	3 cut(s)	45, 197, 210
TaqII	GACCGA	1 cut(s)	140
TauI	GCSGC	4 cut(s)	23, 218, 228, 243
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	278
TspRI	CASTG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.