Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005048

Physical Location & Seq

Genomic Coordinates Forward (+)

34217369 .. 34217845

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGCTAAAGGTGCTTTCCGCACTTGACACGGCGAAGACGCAATGGTACCACTTCAAGGCCATCATCATCGCCGGCATGGGCCTCTTCACCGACGCCTACGACCTCTTCTGTATCCCTCCCATCATGAGACTCCTCGGCCGCATATACTACAACGACGACAACAACTTCGAAATCCCGGCGATAGTCGTTACCGCGCTGGTGGGCTTCCCTCTCCTCGGCACCGTCCTGGGGCAGCTGCTCTTCGGCAGGCTCGGGGACCTCGTCGGTAGGAGACGTGTCTACGGGCTTTCGCTAATGATGATGGTGCTGAGCTCCATAGGGTGCGGCTTCTCCATCTGCACCTCCCGCACCTGCGTCCTAGTCAGCCTCGTCTTCTTCCGGTTCCTCCTCGGCGTCGGCATCGGCGGAGACTACCCCTCTCGGCGACCATCATGTCGGAGTTTGCCAACAAGAGGACACGTGGCTCGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015399 GO:0015405 GO:0015415 GO:0015698 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035435 GO:0042623 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0099133 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

9.66

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	23 - 139	1.3e-09	Sugar (and other) transporter
MFS_1	PF07690	29 - 142	5e-12	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76430
fragaria_vesca	FvH4_5g25990
malus_domestica	MD06G1004700.v1.1
prunus_persica	Prupe.5G006100_v2.0.a1
pyrus_communis	pycom02g23840 pycom06g00430
rosa_chinensis	RchiOBHm_Chr7g0216571 RchiOBHm_Chr7g0216601 RchiOBHm_Chr7g0216611
rosa_laevigata	RLG00000002554 RLG00000002559 RLG00000002561 RLG00000002563
rosa_multiflora	Rmu_co7979128.1_g000001 Rmu_sc0014840.1_g000003 Rmu_sc0016363.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243070 Rroxscaffold_3G00243100 Rroxscaffold_5G00337960
rosa_rugosa	Rorug07G0160800 Rorug07G0160900
rosa_samantha	Rh7AG300600 Rh7AG301000 Rh7BG292100 Rh7BG292500 Rh7CG319000 Rh7CG319600 Rh7DG301600
rosa_wichuraiana	Rw7G025530 Rw7G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
AasI	GACNNNNNNGTC	1 cut(s)	435
Acc36I	ACCTGC	1 cut(s)	362
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	2 cut(s)	48, 221
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	197
AciI	CCGC	6 cut(s)	21, 142, 195, 327, 349, 408
AcoI	YGGCCR	1 cut(s)	139
AcvI	CACGTG	1 cut(s)	463
AcyI	GRCGYC	2 cut(s)	96, 396
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	58, 218, 231, 455
AflIII	ACRYGT	2 cut(s)	277, 460
AgsI	TTSAA	1 cut(s)	58
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	238, 315
AluI	AGCT	2 cut(s)	238, 315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	3 cut(s)	124, 268, 405
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	60, 82, 139
ApeKI	GCWGC	2 cut(s)	235, 238
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	7, 199
AspS9I	GGNCC	2 cut(s)	82, 259
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	82
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	48, 221
BanII	GRGCYC	1 cut(s)	317
BbrPI	CACGTG	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	44, 367
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	225, 247
BccI	CCATC	5 cut(s)	71, 131, 298, 344, 439
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	124, 268, 405
BfaI	CTAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	4 cut(s)	142, 236, 239, 328
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	4 cut(s)	143, 237, 240, 329
Bme1390I	CCNGG	2 cut(s)	179, 230
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	82, 259
BmiI	GGNNCC	4 cut(s)	50, 223, 260, 386
BmrFI	CCNGG	2 cut(s)	179, 230
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	2 cut(s)	44, 367
Bpu1102I	GCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	463
BsaHI	GRCGYC	2 cut(s)	96, 396
BsaJI	CCNNGG	4 cut(s)	136, 217, 229, 391
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 218, 231, 455
Bse118I	RCCGGY	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	4 cut(s)	136, 217, 229, 391
BseLI	CCNNNNNNNGG	4 cut(s)	58, 218, 231, 455
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	125, 206, 380
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	225, 247
BsgI	GTGCAG	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	62, 84, 141
BshNI	GGYRCC	2 cut(s)	48, 221
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	75, 179, 382
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	4 cut(s)	58, 218, 231, 455
BsmAI	GTCTC	3 cut(s)	124, 268, 405
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	62, 84, 141
BsoBI	CYCGRG	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	6 cut(s)	21, 142, 195, 327, 349, 408
BspANI	GGCC	3 cut(s)	62, 84, 141
BspCNI	CTCAG	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	197
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	50, 223, 260, 386
BspMI	ACCTGC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	48, 221
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	136, 217, 229, 391
BssNI	GRCGYC	2 cut(s)	96, 396
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	3 cut(s)	92, 113, 248
BstACI	GRCGYC	2 cut(s)	96, 396
BstBAI	YACGTR	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	76, 251
BstDEI	CTNAG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	197
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 199
BstMAI	GTCTC	3 cut(s)	124, 268, 405
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 348
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	177, 228
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	225, 247
BstV2I	GAAGAC	2 cut(s)	44, 367
BstZI	CGGCCG	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	62, 84, 141
BtgZI	GCGATG	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	2 cut(s)	76, 251
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	2 cut(s)	7, 199
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	82, 259
CseI	GACGC	4 cut(s)	49, 104, 346, 385
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	79, 127, 435
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	311
DrdI	GACNNNNNNGTC	1 cut(s)	435
DseDI	GACNNNNNNGTC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	139
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	92, 113, 248
EarI	CTCTTC	3 cut(s)	92, 113, 248
EciI	GGCGGA	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	315
EclXI	CGGCCG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	259
Eco52I	CGGCCG	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	3 cut(s)	82, 130, 438
FaiI	YATR	7 cut(s)	80, 128, 146, 148, 320, 436, 475
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	78, 126, 434
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	142, 236, 239, 328
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	142, 236, 239, 328
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	6, 198
GluI	GCNGC	4 cut(s)	142, 236, 239, 328
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	62, 84, 141
HapII	CCGG	3 cut(s)	75, 179, 382
HgaI	GACGC	4 cut(s)	49, 104, 346, 385
HhaI	GCGC	2 cut(s)	7, 199
Hin1I	GRCGYC	2 cut(s)	96, 396
Hin1II	CATG	3 cut(s)	82, 130, 438
Hin6I	GCGC	2 cut(s)	5, 197
HinP1I	GCGC	2 cut(s)	5, 197
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	3 cut(s)	75, 179, 382
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	4 cut(s)	98, 161, 269, 401
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	277, 462
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 348
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	2 cut(s)	277, 462
Hsp92I	GRCGYC	2 cut(s)	96, 396
Hsp92II	CATG	3 cut(s)	82, 130, 438
HspAI	GCGC	2 cut(s)	5, 197
KpnI	GGTACC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	8 cut(s)	88, 185, 192, 215, 235, 242, 367, 395
Lsp1109I	GCAGC	2 cut(s)	225, 247
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	277, 462
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	6 cut(s)	49, 79, 100, 235, 367, 370
MhlI	GDGCHC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	419
MroNI	GCCGGC	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	3 cut(s)	75, 179, 382
MspR9I	CCNGG	2 cut(s)	179, 230
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	13, 348
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	179
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	82, 130, 438
NlaIV	GGNNCC	4 cut(s)	50, 223, 260, 386
NmeAIII	GCCGAG	4 cut(s)	117, 198, 372, 403
NspV	TTCGAA	1 cut(s)	171
PagI	TCATGA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PdiI	GCCGGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	4 cut(s)	143, 237, 240, 329
PleI	GAGTC	1 cut(s)	126
PmaCI	CACGTG	1 cut(s)	463
PmlI	CACGTG	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	50, 223, 260, 386
PspPI	GGNCC	2 cut(s)	82, 259
PspPPI	RGGWCCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	248
SatI	GCNGC	4 cut(s)	142, 236, 239, 328
Sau96I	GGNCC	2 cut(s)	82, 259
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	179, 230
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	9 cut(s)	15, 108, 240, 264, 280, 317, 347, 356, 465
SfaNI	GCATC	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	259
SsiI	CCGC	6 cut(s)	21, 142, 195, 327, 349, 408
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	177, 228
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	280, 465
TaqI	TCGA	1 cut(s)	171
TauI	GCSGC	2 cut(s)	144, 330
TseI	GCWGC	2 cut(s)	235, 238
TspDTI	ATGAA	1 cut(s)	462
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.