Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005048

Physical Location & Seq

Genomic Coordinates Forward (+)

34217860 .. 34219914

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCAAGGGTTTGGCATTCTGGCGAGCTCTATAGTGACCACCGTGGTATGCGCCGTCTTTAACTCTGCGAGCAAGCCGGATCCGGAGAAAGCGACGCCGGACGAGGCTGACATAGCGTGGAGGTTGATACTCATGCTCGGTGCAATTCCGGCTGCCATGACGTACTATTGGCGGATGATGATGCCTGAAACTGCCAGGTATACAGCATTGGTTGAGCTAAATGTGAAGCAAGCAGCCAAGGACATGGAGAAAGTGTTGGCTGTTTCCTTGAGTCAAATTGCAGAAGATGAACCAGATTTACTATCAGTAGGGCAAAACCCTGCATCATCATATCCCTTCTTCTCCAAGGAATTTTTACGTCTCCATGGCCGTGATCTCTTCTCTTGTGCTGCCAACTGGTTTCTTGTTGACGTTGTCTTCTACAGCAGCAACCTATTCCAGTCTCAAATATATAGAAGATATATCGACCCAAAATACCCAAAAAAGGTCAATCTCTACCAAGATGCTTTGCATGTTGCTGAGTTGCAAGCAATTGTTACAATATGCTCAACAATTCCAGGATATTGGTTCAGTGTCTTCTTCATTGATCGAATTGGAAGACGAAAAATTCAAATGATGGGGTTTTTCGTCATGGCACTTGTTTATTTCTCGATTGGGATACCCTACAAAACTCACTGGGCAAAAAATACAGATGTAGGTTTCATGGTCCTCTATGGCCTTACTTTCTTCTTTGCAAATTTTGGACCAAATACTACTACTTTTATAGTGCCTGCTGAGCTTTTCCCGGCGAGGTTTAGGGCAACTTGTCATGGGATTTCCGGGGCTTCGGGGAAGGTTGGCGCCTTGATCGGATCAATTGGATTTCTATGGGCTGCACATGGTCAAAACGAGGAGGATAAAAAGACGAGAATCGAGAGGTCGTTGATTGGTTTAGGTGTAGTTTGTATTCTGGGATTGGTGGTAACGTATCTCTTCACACCCGAAACTAGGAGAAGATCACTAGAAGAGAATGAGAACGAGAATGGGAATGAACAAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015399 GO:0015405 GO:0015415 GO:0015698 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035435 GO:0042623 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0099133 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

347

Amino Acids

38.94

Weight (kDa)

6.96

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	5 - 338	1.9e-28	Sugar (and other) transporter
MFS_1	PF07690	10 - 284	8.2e-06	Major Facilitator Superfamily
MFS_1	PF07690	172 - 338	1.1e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76430
fragaria_vesca	FvH4_5g25990
malus_domestica	MD06G1004700.v1.1
prunus_persica	Prupe.5G006100_v2.0.a1
pyrus_communis	pycom02g23840 pycom06g00430
rosa_chinensis	RchiOBHm_Chr7g0216571 RchiOBHm_Chr7g0216601 RchiOBHm_Chr7g0216611
rosa_laevigata	RLG00000002554 RLG00000002559 RLG00000002561 RLG00000002563
rosa_multiflora	Rmu_co7979128.1_g000001 Rmu_sc0014840.1_g000003 Rmu_sc0016363.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243070 Rroxscaffold_3G00243100 Rroxscaffold_5G00337960
rosa_rugosa	Rorug07G0160800 Rorug07G0160900
rosa_samantha	Rh7AG300600 Rh7AG301000 Rh7BG292100 Rh7BG292500 Rh7CG319000 Rh7CG319600 Rh7DG301600
rosa_wichuraiana	Rw7G025530 Rw7G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	839
AccI	GTMKAC	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	3 cut(s)	74, 87, 859
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	350, 606, 736
AcyI	GRCGYC	2 cut(s)	95, 840
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	484, 987
AgsI	TTSAA	1 cut(s)	611
AjnI	CCWGG	2 cut(s)	194, 556
AluBI	AGCT	3 cut(s)	27, 217, 778
AluI	AGCT	3 cut(s)	27, 217, 778
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	365, 447
AlwI	GGATC	3 cut(s)	74, 87, 859
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	2 cut(s)	367, 715
ApeKI	GCWGC	5 cut(s)	152, 233, 389, 426, 872
ApoI	RAATTY	3 cut(s)	350, 606, 736
AspLEI	GCGC	2 cut(s)	53, 842
AspS9I	GGNCC	2 cut(s)	706, 743
AsuC2I	CCSGG	2 cut(s)	785, 820
AvaII	GGWCC	2 cut(s)	706, 743
BamHI	GGATCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	839
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	3 cut(s)	409, 568, 604
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	5 cut(s)	139, 245, 376, 438, 859
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	2 cut(s)	38, 354
BciT130I	CCWGG	2 cut(s)	196, 558
BciVI	GTATCC	1 cut(s)	651
BcnI	CCSGG	2 cut(s)	785, 820
BcoDI	GTCTC	2 cut(s)	365, 447
BfaI	CTAG	2 cut(s)	987, 1001
BfmI	CTRYAG	2 cut(s)	30, 421
BfoI	RGCGCY	1 cut(s)	843
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	5 cut(s)	153, 234, 390, 427, 873
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	5 cut(s)	154, 235, 391, 428, 874
Bme1390I	CCNGG	4 cut(s)	196, 558, 785, 820
Bme18I	GGWCC	2 cut(s)	706, 743
BmgT120I	GGNCC	2 cut(s)	706, 743
BmiI	GGNNCC	2 cut(s)	81, 841
BmrFI	CCNGG	4 cut(s)	196, 558, 785, 820
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	3 cut(s)	171, 332, 493
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	3 cut(s)	409, 568, 604
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	2 cut(s)	785, 820
BsaHI	GRCGYC	2 cut(s)	95, 840
BsaJI	CCNNGG	5 cut(s)	42, 237, 345, 364, 819
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 987
Bse1I	ACTGG	3 cut(s)	401, 439, 680
BseAI	TCCGGA	1 cut(s)	82
BseBI	CCWGG	2 cut(s)	196, 558
BseDI	CCNNGG	5 cut(s)	42, 237, 345, 364, 819
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	484, 987
BseMII	CTCAG	2 cut(s)	510, 765
BseNI	ACTGG	3 cut(s)	401, 439, 680
BseRI	GAGGAG	1 cut(s)	905
BseXI	GCAGC	5 cut(s)	139, 245, 376, 438, 859
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	2 cut(s)	369, 717
BshNI	GGYRCC	1 cut(s)	839
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	6 cut(s)	77, 83, 98, 149, 785, 819
BslI	CCNNNNNNNGG	2 cut(s)	484, 987
BsmAI	GTCTC	2 cut(s)	365, 447
BsmBI	CGTCTC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	369, 717
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
Bsp1720I	GCTNAGC	1 cut(s)	774
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	369, 717
BspCNI	CTCAG	2 cut(s)	511, 766
BspEI	TCCGGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	81, 841
BspPI	GGATC	3 cut(s)	74, 87, 859
BspT107I	GGYRCC	1 cut(s)	839
BsrI	ACTGG	3 cut(s)	401, 439, 680
BssECI	CCNNGG	5 cut(s)	42, 237, 345, 364, 819
BssMI	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
BssNAI	GTATAC	1 cut(s)	201
BssNI	GRCGYC	2 cut(s)	95, 840
BssT1I	CCWWGG	3 cut(s)	237, 345, 364
Bst1107I	GTATAC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	196, 558
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	3 cut(s)	383, 977, 999
BstACI	GRCGYC	2 cut(s)	95, 840
BstC8I	GCNNGC	6 cut(s)	25, 70, 74, 231, 528, 771
BstDEI	CTNAG	2 cut(s)	519, 774
BstDSI	CCRYGG	2 cut(s)	42, 364
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	843
BstHHI	GCGC	2 cut(s)	53, 842
BstKTI	GATC	6 cut(s)	82, 376, 589, 849, 854, 998
BstMAI	GTCTC	2 cut(s)	365, 447
BstMBI	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 149, 775
BstNI	CCWGG	2 cut(s)	196, 558
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	4 cut(s)	194, 556, 783, 818
BstSFI	CTRYAG	2 cut(s)	30, 421
BstV1I	GCAGC	5 cut(s)	139, 245, 376, 438, 859
BstV2I	GAAGAC	3 cut(s)	409, 568, 604
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	2 cut(s)	244, 564
BstYI	RGATCY	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	369, 717
BtgI	CCRYGG	2 cut(s)	42, 364
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	577, 673
Cac8I	GCNNGC	6 cut(s)	25, 70, 74, 231, 528, 771
CfoI	GCGC	2 cut(s)	53, 842
Cfr13I	GGNCC	2 cut(s)	706, 743
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	163
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	519, 774
DinI	GGCGCC	1 cut(s)	841
DpnI	GATC	6 cut(s)	81, 375, 588, 848, 853, 997
DpnII	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	3 cut(s)	383, 977, 999
EarI	CTCTTC	3 cut(s)	383, 977, 999
EciI	GGCGGA	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	237, 345, 364
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	706, 743
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	194, 556
EcoT14I	CCWWGG	3 cut(s)	237, 345, 364
EcoT22I	ATGCAT	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	841
EheI	GGCGCC	1 cut(s)	841
ErhI	CCWWGG	3 cut(s)	237, 345, 364
Esp3I	CGTCTC	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	5 cut(s)	153, 234, 390, 427, 873
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	5 cut(s)	153, 234, 390, 427, 873
FspBI	CTAG	2 cut(s)	987, 1001
GlaI	GCGC	2 cut(s)	52, 841
GluI	GCNGC	5 cut(s)	153, 234, 390, 427, 873
HaeII	RGCGCY	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	369, 717
HapII	CCGG	6 cut(s)	77, 83, 98, 149, 785, 819
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	53, 842
Hin1I	GRCGYC	2 cut(s)	95, 840
Hin6I	GCGC	2 cut(s)	51, 840
HinP1I	GCGC	2 cut(s)	51, 840
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	2 cut(s)	271, 909
HpaII	CCGG	6 cut(s)	77, 83, 98, 149, 785, 819
Hpy166II	GTNNAC	2 cut(s)	201, 409
Hpy188I	TCNGA	1 cut(s)	851
Hpy188III	TCNNGA	3 cut(s)	83, 649, 913
Hpy8I	GTNNAC	2 cut(s)	201, 409
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	346, 826
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	4 cut(s)	161, 358, 411, 965
HpyCH4V	TGCA	9 cut(s)	4, 143, 281, 323, 511, 526, 734, 875, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 149, 775
HpyF3I	CTNAG	2 cut(s)	519, 774
HpySE526I	ACGT	4 cut(s)	161, 358, 411, 965
Hsp92I	GRCGYC	2 cut(s)	95, 840
HspAI	GCGC	2 cut(s)	51, 840
KasI	GGCGCC	1 cut(s)	839
Kpn2I	TCCGGA	1 cut(s)	82
Kzo9I	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
Lsp1109I	GCAGC	5 cut(s)	139, 245, 376, 438, 859
LweI	GCATC	3 cut(s)	171, 332, 493
MaeI	CTAG	2 cut(s)	987, 1001
MaeII	ACGT	4 cut(s)	161, 358, 411, 965
MaeIII	GTNAC	3 cut(s)	34, 535, 961
MalI	GATC	6 cut(s)	81, 375, 588, 848, 853, 997
MboI	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
MfeI	CAATTG	2 cut(s)	531, 855
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	9 cut(s)	144, 276, 350, 531, 552, 591, 606, 736, 855
Mly113I	GGCGCC	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	97, 114, 719, 783, 883, 886, 909
Mph1103I	ATGCAT	1 cut(s)	1042
MroI	TCCGGA	1 cut(s)	82
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	6 cut(s)	77, 83, 98, 149, 785, 819
MspR9I	CCNGG	4 cut(s)	196, 558, 785, 820
MunI	CAATTG	2 cut(s)	531, 855
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	196, 558
MwoI	GCNNNNNNNGC	3 cut(s)	113, 149, 775
NarI	GGCGCC	1 cut(s)	840
NciI	CCSGG	2 cut(s)	785, 820
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
NlaIV	GGNNCC	2 cut(s)	81, 841
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	1042
NspI	RCATGY	1 cut(s)	515
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	909
PflFI	GACNNNGTC	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	5 cut(s)	154, 235, 391, 428, 874
PleI	GAGTC	1 cut(s)	279
PluTI	GGCGCC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	194, 556
PspGI	CCWGG	2 cut(s)	194, 556
PspN4I	GGNNCC	2 cut(s)	81, 841
PspPI	GGNCC	2 cut(s)	706, 743
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	5 cut(s)	153, 234, 390, 427, 873
Sau3AI	GATC	6 cut(s)	79, 373, 586, 846, 851, 995
Sau96I	GGNCC	2 cut(s)	706, 743
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	4 cut(s)	196, 558, 785, 820
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	171, 332, 493
SfcI	CTRYAG	2 cut(s)	30, 421
SfoI	GGCGCC	1 cut(s)	841
SinI	GGWCC	2 cut(s)	706, 743
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	9 cut(s)	144, 276, 350, 531, 552, 591, 606, 736, 855
SsiI	CCGC	1 cut(s)	172
SspDI	GGCGCC	1 cut(s)	839
SspMI	CTAG	2 cut(s)	987, 1001
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	194, 556, 783, 818
StyI	CCWWGG	3 cut(s)	237, 345, 364
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	4 cut(s)	164, 361, 414, 968
TaqI	TCGA	4 cut(s)	465, 589, 650, 912
TasI	AATT	9 cut(s)	144, 276, 350, 531, 552, 591, 606, 736, 855
TfiI	GAWTC	1 cut(s)	909
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	577, 680
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	5 cut(s)	152, 233, 389, 426, 872
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	303, 571, 691, 1044
TspRI	CASTG	2 cut(s)	577, 680
Tth111I	GACNNNGTC	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	706, 743
XapI	RAATTY	3 cut(s)	350, 606, 736
XceI	RCATGY	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	2 cut(s)	987, 1001
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.