Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005048

Physical Location & Seq

Genomic Coordinates Reverse (-)

35606844 .. 35609518

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGCGCTAAAGGTGCTTTCCGCACTTGACACTGCGAAGACGCAATGGTACCACTTCAAGGCCATCATCATCGCCGGCATGGGCCTCTTCACCGACGCCTACGACCTCTTCTGTATCCCTCCCATCATGAGACTCCTCGGCCGCATATACTACAACGACGACGACAACTTCGTAATCCCGGCGATGGTAGTTACCGCGCTGGTGGGCTTCCCTCTCCTGGGCACCGTCCTGGGGCAGCTGCTCTTCGGCAGGCTCGGGGACCTAGTCGGTAGGAGACGTGTCTACGGGCTTTCGCTGATGATGATGGTGCTGAGCTCCATAGGGTGCGGCTTCTCCATCTGTACCTCCCCCACCTGCGTCCTAGTCAGCCTCGTCTTCTTCCGGTTCCTCCTCGGCGTCGGCATCGGCGGAGACTACCCCCTCTCGGCGACCATCATGTCGGAGTTTGCCAACAAGAGGACACGTGGCTCGTTCATAGCGGCTGTGTTCTCCATGCAAGGGTTTGGGATTCTCGCGAGCTCTATAGTGACCACCGTGGTGTGCGCCGTCTTTAACTTTGCGAGCAAGCCGGATCAGGAGAAAGCGACGCCGGACGAGGCTGACATAGCGTGGAGGTTGATACTCATGCTCGGTGCAATTCCGGCTGCCATGACGTACTATTGGCGGATGATGATGCCTGAAACTGCCAGGTATACAGCATTGGTTGAGCTAAATGTGAAGCAAGCAGCCAAGGACATGGAGAAAGTGTTGGCTGTTTCCTTGAGTCAAATTGCAGAAGATGAACCAGATTTACTATCAGTAGGGCAAAACCCTGCATCATCATATCCCTTCTTCTCCAAAGAATTTTTACGTCTCCATGGCCGCGATCTCTTCTCTTGTGCTGCCAACTGGTTTCTTGTTGACGTTGTCTTCTACAGCAGCAACCTATTCCAGTCTCAAATATATAGAAGATATATCGACCCAAAAAAGGTCAATCTCTACCAAGATGCTTTGCATGTTGCTGAGTTGCAAGCAATTGTTACAATATGCTCAACAATTCCAGGATATTGGTTCAGTGTCTTCTTCATTGATCGAATTGGAAGGCGAAAAATTCAAATGATGGGGTTTTTCGTCATGGCACTTGTTTATTTCTCGACTGGGATACCCTACAAAACTCACTGGGCAAAAAATACAGATGTAGGCTTCATGGTCCTCTATGGCCTCACTTTCTTCTTTGCAAATTTTGGACCAAATACTACCACTTTTATAGTGCCTGCTGAGCTTTTCCCGGCGAGGTTTAGGTCAACTTGTCATGGGATTTCAGGGGCTTCGGGGAAGGTTGGCGCCTTGATCGGATCAATTGGATTTCTATGGGCTGCACATGGTCAAAATGAGGAGGACAAAAAGACGAAAGAGATCAAGAGGTCGTTGATTGGTTTAGGTGTAGTTTGTATTCTGGGATTGGTGGTAACGTATCTCTTCACACCCGAAACTAGGGGAAGATCACTAGAAGAGAATGAGAACGAGAATGGGAATGAACAAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015399 GO:0015405 GO:0015415 GO:0015698 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035435 GO:0042623 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0099133 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

509

Amino Acids

56.52

Weight (kDa)

8.26

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	23 - 500	4.7e-48	Sugar (and other) transporter
MFS_1	PF07690	30 - 445	2.3e-25	Major Facilitator Superfamily
MFS_1	PF07690	333 - 499	1.2e-07	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76430
fragaria_vesca	FvH4_5g25990
malus_domestica	MD06G1004700.v1.1
prunus_persica	Prupe.5G006100_v2.0.a1
pyrus_communis	pycom02g23840 pycom06g00430
rosa_chinensis	RchiOBHm_Chr7g0216571 RchiOBHm_Chr7g0216601 RchiOBHm_Chr7g0216611
rosa_laevigata	RLG00000002554 RLG00000002559 RLG00000002561 RLG00000002563
rosa_multiflora	Rmu_co7979128.1_g000001 Rmu_sc0014840.1_g000003 Rmu_sc0016363.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243070 Rroxscaffold_3G00243100 Rroxscaffold_5G00337960
rosa_rugosa	Rorug07G0160800 Rorug07G0160900
rosa_samantha	Rh7AG300600 Rh7AG301000 Rh7BG292100 Rh7BG292500 Rh7CG319000 Rh7CG319600 Rh7DG301600
rosa_wichuraiana	Rw7G025530 Rw7G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
AasI	GACNNNNNNGTC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	362
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	3 cut(s)	48, 221, 1322
AccI	GTMKAC	2 cut(s)	282, 692
AccII	CGCG	3 cut(s)	197, 515, 864
AciI	CCGC	8 cut(s)	21, 142, 195, 327, 408, 479, 664, 862
AclWI	GGATC	2 cut(s)	579, 1342
AcoI	YGGCCR	2 cut(s)	139, 859
AcsI	RAATTY	3 cut(s)	842, 1089, 1219
AcvI	CACGTG	1 cut(s)	464
AcyI	GRCGYC	4 cut(s)	96, 396, 587, 1323
AfaI	GTAC	3 cut(s)	50, 343, 656
AflIII	ACRYGT	2 cut(s)	277, 461
AgsI	TTSAA	2 cut(s)	58, 1094
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	4 cut(s)	216, 228, 686, 1039
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	5 cut(s)	238, 315, 519, 709, 1261
AluI	AGCT	5 cut(s)	238, 315, 519, 709, 1261
Alw21I	GWGCWC	2 cut(s)	317, 521
Alw26I	GTCTC	5 cut(s)	124, 268, 405, 857, 939
AlwI	GGATC	2 cut(s)	579, 1342
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	5 cut(s)	60, 82, 139, 859, 1198
ApeKI	GCWGC	7 cut(s)	235, 238, 644, 725, 881, 918, 1355
ApoI	RAATTY	3 cut(s)	842, 1089, 1219
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	4 cut(s)	7, 199, 545, 1325
AspS9I	GGNCC	4 cut(s)	82, 259, 1189, 1226
AsuC2I	CCSGG	2 cut(s)	179, 1268
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	3 cut(s)	259, 1189, 1226
BaeGI	GKGCMC	1 cut(s)	224
BanI	GGYRCC	3 cut(s)	48, 221, 1322
BanII	GRGCYC	2 cut(s)	317, 521
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	4 cut(s)	44, 367, 901, 1051
Bbv12I	GWGCWC	2 cut(s)	317, 521
BbvI	GCAGC	7 cut(s)	225, 247, 631, 737, 868, 930, 1342
BccI	CCATC	7 cut(s)	71, 131, 178, 298, 344, 440, 1093
BceAI	ACGGC	1 cut(s)	530
BciT130I	CCWGG	4 cut(s)	218, 230, 688, 1041
BciVI	GTATCC	2 cut(s)	125, 1134
BcnI	CCSGG	2 cut(s)	179, 1268
BcoDI	GTCTC	5 cut(s)	124, 268, 405, 857, 939
BfaI	CTAG	4 cut(s)	263, 362, 1473, 1487
BfmI	CTRYAG	2 cut(s)	522, 913
BfoI	RGCGCY	2 cut(s)	8, 1326
BfuAI	ACCTGC	1 cut(s)	362
BfuI	GTATCC	2 cut(s)	125, 1134
BlpI	GCTNAGC	2 cut(s)	311, 1257
Bme1390I	CCNGG	6 cut(s)	179, 218, 230, 688, 1041, 1268
Bme18I	GGWCC	3 cut(s)	259, 1189, 1226
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	82, 259, 1189, 1226
BmiI	GGNNCC	5 cut(s)	50, 223, 260, 386, 1324
BmrFI	CCNGG	6 cut(s)	179, 218, 230, 688, 1041, 1268
BmrI	ACTGGG	2 cut(s)	1146, 1168
BmsI	GCATC	4 cut(s)	411, 663, 824, 976
BmuI	ACTGGG	2 cut(s)	1146, 1168
BpiI	GAAGAC	4 cut(s)	44, 367, 901, 1051
Bpu1102I	GCTNAGC	2 cut(s)	311, 1257
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	2 cut(s)	179, 1268
BsaAI	YACGTR	1 cut(s)	464
BsaHI	GRCGYC	4 cut(s)	96, 396, 587, 1323
BsaJI	CCNNGG	7 cut(s)	136, 217, 229, 391, 534, 729, 856
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	4 cut(s)	893, 931, 1141, 1163
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	4 cut(s)	218, 230, 688, 1041
BseDI	CCNNGG	7 cut(s)	136, 217, 229, 391, 534, 729, 856
BseGI	GGATG	1 cut(s)	672
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	302, 993, 1248
BseNI	ACTGG	4 cut(s)	893, 931, 1141, 1163
BseRI	GAGGAG	3 cut(s)	125, 380, 1388
BseSI	GKGCMC	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	7 cut(s)	225, 247, 631, 737, 868, 930, 1342
BsgI	GTGCAG	1 cut(s)	1341
Bsh1236I	CGCG	3 cut(s)	197, 515, 864
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	5 cut(s)	62, 84, 141, 861, 1200
BshNI	GGYRCC	3 cut(s)	48, 221, 1322
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	317, 521
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	7 cut(s)	75, 179, 382, 569, 590, 641, 1268
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	5 cut(s)	124, 268, 405, 857, 939
BsmBI	CGTCTC	2 cut(s)	268, 857
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	5 cut(s)	62, 84, 141, 861, 1200
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	224, 317, 521
Bsp143I	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
Bsp1720I	GCTNAGC	2 cut(s)	311, 1257
Bsp19I	CCATGG	1 cut(s)	856
Bsp68I	TCGCGA	1 cut(s)	515
BspACI	CCGC	8 cut(s)	21, 142, 195, 327, 408, 479, 664, 862
BspANI	GGCC	5 cut(s)	62, 84, 141, 861, 1200
BspCNI	CTCAG	3 cut(s)	303, 994, 1249
BspFNI	CGCG	3 cut(s)	197, 515, 864
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	5 cut(s)	50, 223, 260, 386, 1324
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	579, 1342
BspQI	GCTCTTC	1 cut(s)	248
BspT107I	GGYRCC	3 cut(s)	48, 221, 1322
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	4 cut(s)	893, 931, 1141, 1163
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	7 cut(s)	136, 217, 229, 391, 534, 729, 856
BssMI	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
BssNAI	GTATAC	1 cut(s)	693
BssNI	GRCGYC	4 cut(s)	96, 396, 587, 1323
BssT1I	CCWWGG	2 cut(s)	729, 856
Bst1107I	GTATAC	1 cut(s)	693
Bst2UI	CCWGG	4 cut(s)	218, 230, 688, 1041
Bst4CI	ACNGT	2 cut(s)	226, 535
Bst6I	CTCTTC	6 cut(s)	92, 113, 248, 875, 1463, 1485
BstACI	GRCGYC	4 cut(s)	96, 396, 587, 1323
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	8 cut(s)	76, 251, 517, 562, 566, 723, 1011, 1254
BstDEI	CTNAG	3 cut(s)	311, 1002, 1257
BstDSI	CCRYGG	2 cut(s)	534, 856
BstF5I	GGATG	1 cut(s)	672
BstFNI	CGCG	3 cut(s)	197, 515, 864
BstH2I	RGCGCY	2 cut(s)	8, 1326
BstHHI	GCGC	4 cut(s)	7, 199, 545, 1325
BstKTI	GATC	7 cut(s)	574, 868, 1072, 1332, 1337, 1398, 1484
BstMAI	GTCTC	5 cut(s)	124, 268, 405, 857, 939
BstMBI	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 605, 641, 1258
BstNI	CCWGG	4 cut(s)	218, 230, 688, 1041
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	6 cut(s)	177, 216, 228, 686, 1039, 1266
BstSFI	CTRYAG	2 cut(s)	522, 913
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	3 cut(s)	197, 515, 864
BstV1I	GCAGC	7 cut(s)	225, 247, 631, 737, 868, 930, 1342
BstV2I	GAAGAC	4 cut(s)	44, 367, 901, 1051
BstXI	CCANNNNNNTGG	2 cut(s)	736, 1047
BstZ17I	GTATAC	1 cut(s)	693
BstZI	CGGCCG	1 cut(s)	139
BsuI	GTATCC	2 cut(s)	125, 1134
BsuRI	GGCC	5 cut(s)	62, 84, 141, 861, 1200
BtgI	CCRYGG	2 cut(s)	534, 856
BtgZI	GCGATG	2 cut(s)	55, 197
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	30, 1060, 1156
BtuMI	TCGCGA	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	8 cut(s)	76, 251, 517, 562, 566, 723, 1011, 1254
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	4 cut(s)	7, 199, 545, 1325
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	4 cut(s)	82, 259, 1189, 1226
CseI	GACGC	5 cut(s)	49, 104, 346, 385, 595
Csp6I	GTAC	3 cut(s)	49, 342, 655
CviQI	GTAC	3 cut(s)	49, 342, 655
DdeI	CTNAG	3 cut(s)	311, 1002, 1257
DinI	GGCGCC	1 cut(s)	1324
DpnI	GATC	7 cut(s)	573, 867, 1071, 1331, 1336, 1397, 1483
DpnII	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	139, 859
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	6 cut(s)	92, 113, 248, 875, 1463, 1485
EarI	CTCTTC	6 cut(s)	92, 113, 248, 875, 1463, 1485
EciI	GGCGGA	2 cut(s)	423, 679
Ecl136II	GAGCTC	2 cut(s)	315, 519
EclXI	CGGCCG	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	729, 856
Eco24I	GRGCYC	2 cut(s)	317, 521
Eco47I	GGWCC	3 cut(s)	259, 1189, 1226
Eco52I	CGGCCG	1 cut(s)	139
Eco53kI	GAGCTC	2 cut(s)	315, 519
Eco72I	CACGTG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	315, 519
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	4 cut(s)	216, 228, 686, 1039
EcoT14I	CCWWGG	2 cut(s)	729, 856
EcoT22I	ATGCAT	1 cut(s)	1528
EcoT38I	GRGCYC	2 cut(s)	317, 521
EgeI	GGCGCC	1 cut(s)	1324
EheI	GGCGCC	1 cut(s)	1324
ErhI	CCWWGG	2 cut(s)	729, 856
Esp3I	CGTCTC	2 cut(s)	268, 857
FaqI	GGGAC	1 cut(s)	272
FblI	GTMKAC	2 cut(s)	282, 692
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	2 cut(s)	317, 521
FspBI	CTAG	4 cut(s)	263, 362, 1473, 1487
GlaI	GCGC	4 cut(s)	6, 198, 544, 1324
HaeII	RGCGCY	2 cut(s)	8, 1326
HaeIII	GGCC	5 cut(s)	62, 84, 141, 861, 1200
HapII	CCGG	7 cut(s)	75, 179, 382, 569, 590, 641, 1268
HgaI	GACGC	5 cut(s)	49, 104, 346, 385, 595
HhaI	GCGC	4 cut(s)	7, 199, 545, 1325
Hin1I	GRCGYC	4 cut(s)	96, 396, 587, 1323
Hin6I	GCGC	4 cut(s)	5, 197, 543, 1323
HinP1I	GCGC	4 cut(s)	5, 197, 543, 1323
HincII	GTYRAC	2 cut(s)	901, 1284
HindII	GTYRAC	2 cut(s)	901, 1284
HinfI	GANTC	3 cut(s)	132, 508, 763
HpaII	CCGG	7 cut(s)	75, 179, 382, 569, 590, 641, 1268
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	4 cut(s)	283, 693, 901, 1284
Hpy188I	TCNGA	2 cut(s)	442, 1334
Hpy188III	TCNNGA	5 cut(s)	127, 514, 575, 1132, 1399
Hpy8I	GTNNAC	4 cut(s)	283, 693, 901, 1284
Hpy99I	CGWCG	5 cut(s)	98, 161, 164, 401, 589
HpyAV	CCTTC	3 cut(s)	838, 1074, 1309
HpyCH4III	ACNGT	2 cut(s)	226, 535
HpyCH4IV	ACGT	6 cut(s)	277, 463, 653, 850, 903, 1451
HpyCH4V	TGCA	9 cut(s)	496, 635, 773, 815, 994, 1009, 1217, 1358, 1526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 605, 641, 1258
HpyF3I	CTNAG	3 cut(s)	311, 1002, 1257
HpySE526I	ACGT	6 cut(s)	277, 463, 653, 850, 903, 1451
Hsp92I	GRCGYC	4 cut(s)	96, 396, 587, 1323
HspAI	GCGC	4 cut(s)	5, 197, 543, 1323
KasI	GGCGCC	1 cut(s)	1322
KpnI	GGTACC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	7 cut(s)	225, 247, 631, 737, 868, 930, 1342
LweI	GCATC	4 cut(s)	411, 663, 824, 976
MaeI	CTAG	4 cut(s)	263, 362, 1473, 1487
MaeII	ACGT	6 cut(s)	277, 463, 653, 850, 903, 1451
MaeIII	GTNAC	4 cut(s)	190, 526, 1018, 1447
MalI	GATC	7 cut(s)	573, 867, 1071, 1331, 1336, 1397, 1483
MboI	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
MfeI	CAATTG	2 cut(s)	1014, 1338
MhlI	GDGCHC	3 cut(s)	224, 317, 521
MluCI	AATT	9 cut(s)	636, 768, 842, 1014, 1035, 1074, 1089, 1219, 1338
Mly113I	GGCGCC	1 cut(s)	1323
MlyI	GAGTC	2 cut(s)	126, 772
MmeI	TCCRAC	1 cut(s)	420
Mph1103I	ATGCAT	1 cut(s)	1528
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	7 cut(s)	75, 179, 382, 569, 590, 641, 1268
MspR9I	CCNGG	6 cut(s)	179, 218, 230, 688, 1041, 1268
MunI	CAATTG	2 cut(s)	1014, 1338
MvaI	CCWGG	4 cut(s)	218, 230, 688, 1041
MvnI	CGCG	3 cut(s)	197, 515, 864
MwoI	GCNNNNNNNGC	4 cut(s)	13, 605, 641, 1258
NaeI	GCCGGC	1 cut(s)	76
NarI	GGCGCC	1 cut(s)	1323
NciI	CCSGG	2 cut(s)	179, 1268
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
NgoMIV	GCCGGC	1 cut(s)	74
NlaIV	GGNNCC	5 cut(s)	50, 223, 260, 386, 1324
NmeAIII	GCCGAG	3 cut(s)	117, 372, 404
NmuCI	GTSAC	1 cut(s)	526
NruI	TCGCGA	1 cut(s)	515
NsiI	ATGCAT	1 cut(s)	1528
NspI	RCATGY	1 cut(s)	998
OliI	CACNNNNGTG	1 cut(s)	536
PagI	TCATGA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	508
PflFI	GACNNNGTC	2 cut(s)	263, 905
PfoI	TCCNGGA	1 cut(s)	1039
PleI	GAGTC	2 cut(s)	126, 771
PluTI	GGCGCC	1 cut(s)	1326
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
PpsI	GAGTC	2 cut(s)	126, 771
Ppu21I	YACGTR	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	2 cut(s)	317, 521
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	4 cut(s)	216, 228, 686, 1039
PspCI	CACGTG	1 cut(s)	464
PspGI	CCWGG	4 cut(s)	216, 228, 686, 1039
PspN4I	GGNNCC	5 cut(s)	50, 223, 260, 386, 1324
PspPI	GGNCC	4 cut(s)	82, 259, 1189, 1226
PspPPI	RGGWCCY	1 cut(s)	259
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PsyI	GACNNNGTC	2 cut(s)	263, 905
PvuII	CAGCTG	1 cut(s)	238
RruI	TCGCGA	1 cut(s)	515
RsaI	GTAC	3 cut(s)	50, 343, 656
RsaNI	GTAC	3 cut(s)	49, 342, 655
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	2 cut(s)	317, 521
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	7 cut(s)	571, 865, 1069, 1329, 1334, 1395, 1481
Sau96I	GGNCC	4 cut(s)	82, 259, 1189, 1226
SchI	GAGTC	2 cut(s)	126, 772
ScrFI	CCNGG	6 cut(s)	179, 218, 230, 688, 1041, 1268
SduI	GDGCHC	3 cut(s)	224, 317, 521
SfaNI	GCATC	4 cut(s)	411, 663, 824, 976
SfcI	CTRYAG	2 cut(s)	522, 913
SfoI	GGCGCC	1 cut(s)	1324
SinI	GGWCC	3 cut(s)	259, 1189, 1226
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
Sse9I	AATT	9 cut(s)	636, 768, 842, 1014, 1035, 1074, 1089, 1219, 1338
SsiI	CCGC	8 cut(s)	21, 142, 195, 327, 408, 479, 664, 862
SspDI	GGCGCC	1 cut(s)	1322
SspMI	CTAG	4 cut(s)	263, 362, 1473, 1487
SstI	GAGCTC	2 cut(s)	317, 521
StyD4I	CCNGG	6 cut(s)	177, 216, 228, 686, 1039, 1266
StyI	CCWWGG	2 cut(s)	729, 856
TaaI	ACNGT	2 cut(s)	226, 535
TaiI	ACGT	6 cut(s)	280, 466, 656, 853, 906, 1454
TaqI	TCGA	3 cut(s)	957, 1072, 1133
TasI	AATT	9 cut(s)	636, 768, 842, 1014, 1035, 1074, 1089, 1219, 1338
TauI	GCSGC	4 cut(s)	144, 330, 482, 864
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	3 cut(s)	37, 1060, 1163
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	7 cut(s)	235, 238, 644, 725, 881, 918, 1355
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	5 cut(s)	463, 795, 1054, 1174, 1530
TspRI	CASTG	3 cut(s)	37, 1060, 1163
Tth111I	GACNNNGTC	2 cut(s)	263, 905
VpaK11BI	GGWCC	3 cut(s)	259, 1189, 1226
XapI	RAATTY	3 cut(s)	842, 1089, 1219
XceI	RCATGY	1 cut(s)	998
XmiI	GTMKAC	2 cut(s)	282, 692
XspI	CTAG	4 cut(s)	263, 362, 1473, 1487
Zsp2I	ATGCAT	1 cut(s)	1528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.