Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005048

Physical Location & Seq

Genomic Coordinates Forward (+)

6195613 .. 6195924

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGTTAAAGAGCAATTGGGAGTGCTAAATGCACTTGATGTGGCCAAGACTCAATTGTATCATTTCACAGCAATTGTGATTGCTGGAATGGGATTCTTCACTGATGCTTATGATCTTTTCTGCATTTCCTTGGTCTCCAAGTTACTCGGCCGCATATACTACACAGACATAACTCATCCGAAGCCGGGAACGTTGCCACCAAATGTGGCTGCTGCCGTTAATGGTGTGGCCCTAGTTGGAACCCTAGCCGGCCAACTCTTCTTCGGGTGGCTCGGTGACAGATTGGGTCGCAAAAAGGTCTCTATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015114 GO:0015291 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0016036 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0035435 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

103

Amino Acids

11.07

Weight (kDa)

9.21

Isoelectric Point (pI)

11.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	25 - 102	2.5e-07	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76430
fragaria_vesca	FvH4_5g25990
malus_domestica	MD06G1004700.v1.1
prunus_persica	Prupe.5G006100_v2.0.a1
pyrus_communis	pycom02g23840 pycom06g00430
rosa_chinensis	RchiOBHm_Chr7g0216571 RchiOBHm_Chr7g0216601 RchiOBHm_Chr7g0216611
rosa_laevigata	RLG00000002554 RLG00000002559 RLG00000002561 RLG00000002563
rosa_multiflora	Rmu_co7979128.1_g000001 Rmu_sc0014840.1_g000003 Rmu_sc0016363.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243070 Rroxscaffold_3G00243100 Rroxscaffold_5G00337960
rosa_rugosa	Rorug07G0160800 Rorug07G0160900
rosa_samantha	Rh7AG300600 Rh7AG301000 Rh7BG292100 Rh7BG292500 Rh7CG319000 Rh7CG319600 Rh7DG301600
rosa_wichuraiana	Rw7G025530 Rw7G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AclI	AACGTT	1 cut(s)	191
AcoI	YGGCCR	3 cut(s)	42, 148, 250
AfiI	CCNNNNNNNGG	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	139, 304
AoxI	GGCC	4 cut(s)	42, 148, 228, 250
ApeKI	GCWGC	2 cut(s)	209, 212
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	196, 199
BceAI	ACGGC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	139, 304
BfaI	CTAG	2 cut(s)	233, 245
BisI	GCNGC	3 cut(s)	151, 210, 213
BlsI	GCNGC	3 cut(s)	152, 211, 214
Bme1390I	CCNGG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	186
BsaI	GGTCTC	2 cut(s)	139, 304
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	196, 199
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	4 cut(s)	44, 150, 230, 252
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	185, 249
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	139, 304
BsnI	GGCC	4 cut(s)	44, 150, 230, 252
Bso31I	GGTCTC	2 cut(s)	139, 304
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	4 cut(s)	44, 150, 230, 252
BspLI	GGNNCC	1 cut(s)	241
BspTNI	GGTCTC	2 cut(s)	139, 304
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	2 cut(s)	139, 304
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	2 cut(s)	196, 199
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	44, 150, 230, 252
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	229
CviJI	RGCY	8 cut(s)	44, 150, 184, 209, 230, 248, 252, 271
CviKI_1	RGCY	8 cut(s)	44, 150, 184, 209, 230, 248, 252, 271
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	3 cut(s)	42, 148, 250
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EclXI	CGGCCG	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	2 cut(s)	139, 304
Eco52I	CGGCCG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaiI	YATR	5 cut(s)	111, 155, 157, 170, 305
Fnu4HI	GCNGC	3 cut(s)	151, 210, 213
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	151, 210, 213
FspBI	CTAG	2 cut(s)	233, 245
GluI	GCNGC	3 cut(s)	151, 210, 213
HaeIII	GGCC	4 cut(s)	44, 150, 230, 252
HapII	CCGG	2 cut(s)	185, 249
HinfI	GANTC	2 cut(s)	49, 93
HpaII	CCGG	2 cut(s)	185, 249
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	32, 123
HpySE526I	ACGT	1 cut(s)	191
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	69, 198, 262
Lsp1109I	GCAGC	2 cut(s)	196, 199
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	233, 245
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	141, 275
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	88, 250, 253
MfeI	CAATTG	3 cut(s)	14, 53, 72
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	3 cut(s)	14, 53, 72
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	217
Mox20I	TGGCCA	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	2 cut(s)	6, 219
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	185, 249
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	3 cut(s)	14, 53, 72
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	275
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	152, 211, 214
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	6, 219
SatI	GCNGC	3 cut(s)	151, 210, 213
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	2 cut(s)	194, 300
SfaNI	GCATC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	14, 53, 72
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	233, 245
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	194
TasI	AATT	3 cut(s)	14, 53, 72
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	6, 219
Tru9I	TTAA	2 cut(s)	6, 219
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	209, 212
Tsp45I	GTSAC	1 cut(s)	275
TspRI	CASTG	1 cut(s)	106
XspI	CTAG	2 cut(s)	233, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.