Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7979128.1

Orthogroup ID

OG0005048

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 502

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7979128.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggcgctaaaggtgcttttcgcccttgacacggcgaagacgcaatggtaccacttcaaggccatcaccatcgccggcatgggcctcttcaccgacgcctacgacctcttctgtatccctcccatcatgagactcctcggccgcatatactacaacaaacgtcaaccaaacgacacagtattcaacaacaacgacaacaacttcgtaatcccggcgctagtcgttacggcgctggtgggcttccctctcctcggcaccgtcctggggcagctgctcttcggcaggcttggggacctagtcggtaggagacgtgtctacgggctttcgctgatggtgatggtgctgagctccatagggtgcggcttctccatctgcacctcccccacctgcgtcctagtcagcctcgtcttctttcggttcttcctcggcgtcggcatcggcggagactaccccctctcggcgaccatcatgtcggagtttgccaacaagaggacacgtggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015399 GO:0015405 GO:0015415 GO:0015698 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0035435 GO:0042623 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0099133 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

9.54

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76430
fragaria_vesca	FvH4_5g25990
malus_domestica	MD06G1004700.v1.1
prunus_persica	Prupe.5G006100_v2.0.a1
pyrus_communis	pycom02g23840 pycom06g00430
rosa_chinensis	RchiOBHm_Chr7g0216571 RchiOBHm_Chr7g0216601 RchiOBHm_Chr7g0216611
rosa_laevigata	RLG00000002554 RLG00000002559 RLG00000002561 RLG00000002563
rosa_multiflora	Rmu_co7979128.1_g000001 Rmu_sc0014840.1_g000003 Rmu_sc0016363.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243070 Rroxscaffold_3G00243100 Rroxscaffold_5G00337960
rosa_rugosa	Rorug07G0160800 Rorug07G0160900
rosa_samantha	Rh7AG300600 Rh7AG301000 Rh7BG292100 Rh7BG292500 Rh7CG319000 Rh7CG319600 Rh7DG301600
rosa_wichuraiana	Rw7G025530 Rw7G025540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
AasI	GACNNNNNNGTC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	395
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	2 cut(s)	48, 254
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	3 cut(s)	142, 360, 441
AcoI	YGGCCR	1 cut(s)	139
AcvI	CACGTG	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	96, 429
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	6 cut(s)	31, 58, 251, 264, 457, 489
AflIII	ACRYGT	2 cut(s)	310, 494
AgsI	TTSAA	2 cut(s)	58, 184
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	2 cut(s)	271, 348
AluI	AGCT	2 cut(s)	271, 348
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	3 cut(s)	124, 301, 438
AoxI	GGCC	3 cut(s)	60, 82, 139
ApeKI	GCWGC	2 cut(s)	268, 271
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	3 cut(s)	7, 217, 232
AspS9I	GGNCC	2 cut(s)	82, 292
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	58, 82, 346
AvaII	GGWCC	1 cut(s)	292
BanI	GGYRCC	2 cut(s)	48, 254
BanII	GRGCYC	1 cut(s)	350
BbrPI	CACGTG	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	44, 400
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	258, 280
BccI	CCATC	7 cut(s)	71, 77, 131, 325, 331, 377, 473
BceAI	ACGGC	2 cut(s)	48, 243
BciT130I	CCWGG	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	3 cut(s)	124, 301, 438
BfaI	CTAG	3 cut(s)	218, 296, 395
BfoI	RGCGCY	3 cut(s)	8, 218, 233
BfuAI	ACCTGC	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	4 cut(s)	142, 269, 272, 361
BlpI	GCTNAGC	1 cut(s)	344
BlsI	GCNGC	4 cut(s)	143, 270, 273, 362
Bme1390I	CCNGG	2 cut(s)	212, 263
Bme18I	GGWCC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	82, 292
BmiI	GGNNCC	3 cut(s)	50, 256, 293
BmrFI	CCNGG	2 cut(s)	212, 263
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	2 cut(s)	44, 400
Bpu1102I	GCTNAGC	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	497
BsaHI	GRCGYC	2 cut(s)	96, 429
BsaJI	CCNNGG	4 cut(s)	136, 250, 262, 424
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 58, 251, 264, 457, 489
Bse118I	RCCGGY	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	4 cut(s)	136, 250, 262, 424
BseLI	CCNNNNNNNGG	6 cut(s)	31, 58, 251, 264, 457, 489
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	125, 239
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	258, 280
BsgI	GTGCAG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	62, 84, 141
BshNI	GGYRCC	2 cut(s)	48, 254
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	75, 212
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	6 cut(s)	31, 58, 251, 264, 457, 489
BsmAI	GTCTC	3 cut(s)	124, 301, 438
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	62, 84, 141
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp1720I	GCTNAGC	1 cut(s)	344
BspACI	CCGC	3 cut(s)	142, 360, 441
BspANI	GGCC	3 cut(s)	62, 84, 141
BspCNI	CTCAG	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	50, 256, 293
BspMI	ACCTGC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	48, 254
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	4 cut(s)	136, 250, 262, 424
BssNI	GRCGYC	2 cut(s)	96, 429
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	178, 259
Bst6I	CTCTTC	3 cut(s)	92, 113, 281
BstACI	GRCGYC	2 cut(s)	96, 429
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	76, 284
BstDEI	CTNAG	1 cut(s)	344
BstH2I	RGCGCY	3 cut(s)	8, 218, 233
BstHHI	GCGC	3 cut(s)	7, 217, 232
BstMAI	GTCTC	3 cut(s)	124, 301, 438
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	210, 261
BstV1I	GCAGC	2 cut(s)	258, 280
BstV2I	GAAGAC	2 cut(s)	44, 400
BstZI	CGGCCG	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	62, 84, 141
BtgZI	GCGATG	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	311
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	76, 284
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	3 cut(s)	7, 217, 232
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	82, 292
CseI	GACGC	4 cut(s)	49, 104, 379, 418
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	79, 127, 469
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	344
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	139
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	92, 113, 281
EarI	CTCTTC	3 cut(s)	92, 113, 281
EciI	GGCGGA	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	348
EclXI	CGGCCG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	348
Eco72I	CACGTG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	3 cut(s)	82, 130, 472
FaiI	YATR	6 cut(s)	80, 128, 146, 148, 353, 470
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	78, 126, 468
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	142, 269, 272, 361
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	4 cut(s)	142, 269, 272, 361
FspBI	CTAG	3 cut(s)	218, 296, 395
GlaI	GCGC	3 cut(s)	6, 216, 231
GluI	GCNGC	4 cut(s)	142, 269, 272, 361
HaeII	RGCGCY	3 cut(s)	8, 218, 233
HaeIII	GGCC	3 cut(s)	62, 84, 141
HapII	CCGG	2 cut(s)	75, 212
HgaI	GACGC	4 cut(s)	49, 104, 379, 418
HhaI	GCGC	3 cut(s)	7, 217, 232
Hin1I	GRCGYC	2 cut(s)	96, 429
Hin1II	CATG	3 cut(s)	82, 130, 472
Hin6I	GCGC	3 cut(s)	5, 215, 230
HinP1I	GCGC	3 cut(s)	5, 215, 230
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	2 cut(s)	75, 212
HphI	GGTGA	3 cut(s)	58, 82, 346
Hpy166II	GTNNAC	2 cut(s)	164, 316
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	164, 316
Hpy99I	CGWCG	2 cut(s)	98, 434
HpyCH4III	ACNGT	2 cut(s)	178, 259
HpyCH4IV	ACGT	3 cut(s)	160, 310, 496
HpyCH4V	TGCA	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	3 cut(s)	160, 310, 496
Hsp92I	GRCGYC	2 cut(s)	96, 429
Hsp92II	CATG	3 cut(s)	82, 130, 472
HspAI	GCGC	3 cut(s)	5, 215, 230
KpnI	GGTACC	1 cut(s)	52
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	7 cut(s)	88, 218, 225, 248, 268, 275, 400
Lsp1109I	GCAGC	2 cut(s)	258, 280
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	3 cut(s)	218, 296, 395
MaeII	ACGT	3 cut(s)	160, 310, 496
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	6 cut(s)	49, 79, 100, 268, 400, 412
MhlI	GDGCHC	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	453
MroNI	GCCGGC	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	2 cut(s)	75, 212
MspR9I	CCNGG	2 cut(s)	212, 263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	13
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	212
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	3 cut(s)	82, 130, 472
NlaIV	GGNNCC	3 cut(s)	50, 256, 293
NmeAIII	GCCGAG	4 cut(s)	117, 231, 405, 437
PagI	TCATGA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	281
PdiI	GCCGGC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	143, 270, 273, 362
PleI	GAGTC	1 cut(s)	126
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	261
PspCI	CACGTG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	50, 256, 293
PspPI	GGNCC	2 cut(s)	82, 292
PspPPI	RGGWCCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	281
SatI	GCNGC	4 cut(s)	142, 269, 272, 361
Sau96I	GGNCC	2 cut(s)	82, 292
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	212, 263
SduI	GDGCHC	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	444
SinI	GGWCC	1 cut(s)	292
SsiI	CCGC	3 cut(s)	142, 360, 441
SspMI	CTAG	3 cut(s)	218, 296, 395
SstI	GAGCTC	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	210, 261
TaaI	ACNGT	2 cut(s)	178, 259
TaiI	ACGT	3 cut(s)	163, 313, 499
TauI	GCSGC	2 cut(s)	144, 363
TseI	GCWGC	2 cut(s)	268, 271
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	3 cut(s)	218, 296, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.