Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Forward (+)

4489918 .. 4491076

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTGGCCTGCAGGAAATGAACGTTTTCGTTATACTGTTCAATCCTACTCAAAGAGGATGGTAGAATTGGATCAAATGTTGACAAGAATGGTGTTTGATATTTATGGGGTGGGGAGGCTTTATGACTCTCACAAGGCATCCGCCACTTACCAGCTTAGATGCATTGAATATCAAACACAGACTATACAGCGGACGAATAAGAATGATGTGAGACTGTTTCCTCACACAGACAAGTGTTTCACAACCATCGTGCATCAAAATGAGGTCAATGGTTTGCGGATCAAAACAAAGGCTGGCCAATGGATTGATTATGCACCTTCTTCACCTTCATCTTTTATAGTAATTGCATCCGATGTACTCATGGCATGGAGTAACGACAGGGTATGCGCATGTGAGCATCAAGTCATCCTGGAACAGAAGAAAATAAGATATTCGGTGTCATTATTCTCATATAAAAATGATATTGTGCAAGTACCTGAAGAGCTAGTTGATAACAAACACCCCTTACGATATAAGCCATTTGAAGGATCGATCACTTTGATTTCCTTCGTTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010150 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016679 GO:0016682 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0090693 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

187

Amino Acids

21.72

Weight (kDa)

8.84

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	68 - 149	3.4e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	388
AciI	CCGC	3 cut(s)	141, 190, 277
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	3 cut(s)	78, 287, 535
AcoI	YGGCCR	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	357, 474
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	41, 167, 524
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	154, 484
AluI	AGCT	2 cut(s)	154, 484
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	3 cut(s)	78, 287, 535
AoxI	GGCC	2 cut(s)	5, 295
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	315
BalI	TGGCCA	1 cut(s)	297
BccI	CCATC	2 cut(s)	52, 254
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	5 cut(s)	146, 149, 262, 356, 406
Bsa29I	ATCGAT	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	530
BseGI	GGATG	4 cut(s)	63, 137, 347, 405
BseLI	CCNNNNNNNGG	1 cut(s)	524
BshFI	GGCC	2 cut(s)	7, 297
BshVI	ATCGAT	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	7, 297
Bsp143I	GATC	4 cut(s)	70, 279, 527, 531
BspACI	CCGC	3 cut(s)	141, 190, 277
BspANI	GGCC	2 cut(s)	7, 297
BspDI	ATCGAT	1 cut(s)	530
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	3 cut(s)	78, 287, 535
BspQI	GCTCTTC	1 cut(s)	474
BssMI	GATC	4 cut(s)	70, 279, 527, 531
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	37, 216
Bst6I	CTCTTC	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	9, 295
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	4 cut(s)	63, 137, 347, 405
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	4 cut(s)	73, 282, 530, 534
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	4 cut(s)	70, 279, 527, 531
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	7, 297
BsuTUI	ATCGAT	1 cut(s)	530
BtsCI	GGATG	4 cut(s)	63, 137, 347, 405
Cac8I	GCNNGC	2 cut(s)	9, 295
CfoI	GCGC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	356, 473
CviAII	CATG	3 cut(s)	361, 366, 390
CviJI	RGCY	7 cut(s)	7, 118, 154, 293, 297, 484, 517
CviKI_1	RGCY	7 cut(s)	7, 118, 154, 293, 297, 484, 517
CviQI	GTAC	2 cut(s)	356, 473
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	72, 281, 529, 533
DpnII	GATC	4 cut(s)	70, 279, 527, 531
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	164
FaeI	CATG	3 cut(s)	364, 369, 393
FatI	CATG	3 cut(s)	360, 365, 389
FokI	GGATG	4 cut(s)	70, 124, 334, 392
FspAI	RTGCGCAY	1 cut(s)	388
FspBI	CTAG	1 cut(s)	485
FspI	TGCGCA	1 cut(s)	388
GlaI	GCGC	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	7, 297
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	364, 369, 393
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	1 cut(s)	352
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	4 cut(s)	327, 336, 518, 556
HpyCH4III	ACNGT	2 cut(s)	37, 216
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	6 cut(s)	11, 162, 253, 314, 347, 469
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	364, 369, 393
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	4 cut(s)	70, 279, 527, 531
LguI	GCTCTTC	1 cut(s)	474
LpnPI	CCDG	7 cut(s)	21, 164, 279, 364, 395, 422, 489
LweI	GCATC	5 cut(s)	146, 149, 262, 356, 406
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	72, 281, 529, 533
MboI	GATC	4 cut(s)	70, 279, 527, 531
MboII	GAAGA	3 cut(s)	312, 430, 491
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	2 cut(s)	65, 342
MluNI	TGGCCA	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	4 cut(s)	48, 108, 231, 256
Mox20I	TGGCCA	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	70, 279, 527, 531
NlaIII	CATG	3 cut(s)	364, 369, 393
NsbI	TGCGCA	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	408
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	2 cut(s)	357, 474
RsaNI	GTAC	2 cut(s)	356, 473
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	70, 279, 527, 531
SbfI	CCTGCAGG	1 cut(s)	13
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	410
SdaI	CCTGCAGG	1 cut(s)	13
SetI	ASST	7 cut(s)	25, 156, 267, 319, 328, 478, 486
SfaNI	GCATC	5 cut(s)	146, 149, 262, 356, 406
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse8387I	CCTGCAGG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	65, 342
SsiI	CCGC	3 cut(s)	141, 190, 277
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	37, 216
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	65, 342
TatI	WGTACW	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	33, 318
XceI	RCATGY	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.