Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005110

Physical Location & Seq

Genomic Coordinates Forward (+)

4891942 .. 4898076

Gene Structure 6135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGTATGGGACTGACCTTACAAGTAGTTCTGAGAAAAGTGAGATTCGTGTTTTCTGTGACAAAGCATTTTCGCGCCTAAAGGGATCTGACAGGACTTTACCACAGGTTGTCAAAGTTCAAAGCCTTCTCCATAGAGGAATTGGCGTCCATCATGCTGGACTACTTCCAATTGTTAAGGAAGTAGTGGAAATGCTTTTTTGTCGTGGAGTGATCAAGGTTTTGTTCTCAACAGAGACATTTGCAATGGGGGTTAATGCACCAGCTAGAACGGTTGTTTTTGATACGTTAAGGAAATTTGATGGCAAGGAATTTAGACAATTACTTCCAGGAGAATACACTCAAATGGCAGGCCGTGCGGGCAGAAGAGGACTTGATAAAATTGGTACAGTTATTGTAATGTGCCGTGATGAAATCCTAGAAGAGAGTGATTTGAAGCATGTCATAGTTGGAAGTGCAACCAGGCTTGAATCTCAGTTTCGGCTTACCTATATCATGATCCTGCATCTCCTTCGTGTTGAGGAACTGAAGGTGGAGGACATGCTGAAAAGAAGTTTTGCTGAGTTCCATGCTCAGAAGAAACTACCAGAACAGCAGCAACTTCTGATGCGAAAGCTTGCTCAGCCTACAAAAACTATTGAATGTATAAAATGTGAATCAGCTATTGAGGAGTATTATGACATGTACTCAGAAGCTGCGAAGTATAGCAAGGAAATATCGGAGGCCGTTATGCAGTCTTCTATTGCCAAACAATTTCTTACAACTGGGAGAGTGGTAGTCATGGGATCACACTCAGCACAGGACCACTTGCTTGGAGTCGTCGTGAAAGCACCTAGTGCTAATAATAAACAGTACATCGTTTTGGTGCTGAAACCTGAATTATTGCCCCAGACTCCACTGGGTAGTGGTAACTTGCAAGACAGTAAAAACACAAATTTTCCACAAGGTTATTTCGTGGTACCAAAATCTAAACGTGCTCTTGATGAAGAGTATCGTTCTGGTGTCACACCTCGGAAAGCATCGGGTGTCATCAAGATAAAATTACCACACCAGGGTTCTGCTGCTGGGGTGAGCTTTGAGGTTAAAGAAGTTGACAGCAAAGATTTTCTATGCATATGCAATTGCAAGATAAAAATTGACCAAGTTGGCCTTCTTGAAGACAATAGCAATGCTGCTTACTCCAAGACAGTTCAACAGCTGTTGGACACAAAATCCGACGGAAAGACGTACCCTCCAGCCTTGGATCCATATAAAGATCTGAATTTGAGAGATGTAAATCTTGTCGGAACATACCATAAGTGGATTAACTTATTGCAAAAGATGGCAATGAACAAGTGCCATGGGTGTATAAAGTTGGACGAGCACATTAAGTTGGCAAGAGAGATAAAGAGACACAGTGAGGAAGTCGATGCTCTTAAGTTTCAAATGTCAGATGAAGCACTTCAACAAATGCCAGACTTTCAAGGCCGGATAGATGTTCTGAAGGAAATTGGATGTATAGATGCTGATCTTGTGGTTCAAATAAAAGGCCGTGTAGCATGCGAAATGAATTCTGGGGAGGAGTTGATATCCACAGAGTGTTTGTTTGAAAACCAACTGGATGACCTGGAACCAGAAGAAGCGGTGGCGTTGATGTCTGCCTTTGTGTTTCAGCAGAGGAATACTTCAGAACCTTCTCTTACTCCAAAACTGTCTCAGGCCAAACAGAGGTTGTACGATACAGCAATAAGACTTGGCCAGCTTCAAGCCCACTTCAATGTTCAAATAAATCCAGAGGAGTATGCTCGAGAGAATCTCAAGTTTGGTCTTGTTGAAGTCGTTTATGAGTGGGCAAAGGGCACTCCGTTTGCAGACATTTGCGAACTTACAGATGTTCCTGAAGGCATGATAGTTCGAACCATTGTCAGACTTGATGAGACGTGCCGTGAGTTCAAAAATGCTGCATCTATTATGGGCAATTCTGCTCTGTACAAGAAAATGGAAACAGCATCAAATGCGATAAAGCGTGACATTGTATTTGCCGCTAGCTTATATGTCACCGGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

682

Amino Acids

76.5

Weight (kDa)

6.73

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	44 - 123	4.4e-06	Helicase conserved C-terminal domain
MTR4-like_stalk	PF21408	178 - 242	4.5e-13	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	245 - 477	3.6e-26	Mtr4-like, beta-barrel domain
DSHCT	PF08148	503 - 673	3e-59	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46960 AT3G46960 AT3G46960
fragaria_vesca	FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880 FvH4_3g37880
malus_domestica	MD03G1077900.v1.1 MD11G1082500.v1.1
prunus_persica	Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1 Prupe.6G062900_v2.0.a1
pyrus_communis	pycom03g06210 pycom11g07060
rosa_chinensis	RchiOBHm_Chr5g0068091
rosa_laevigata	RLG00000035954
rosa_multiflora	Rmu_sc0000435.1_g000017
rosa_roxburghii	Rroxscaffold_1G00012520 Rroxscaffold_1G00013260
rosa_rugosa	Rorug05G0387900 Rorug05G0388300 Rorug05G0388400 Rorug05G0388500
rosa_samantha	Rh5AG446500 Rh5BG464600 Rh5CG486400 Rh5DG478400
rosa_wichuraiana	Rw5G041700 Rw5G041740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	955
AccII	CGCG	1 cut(s)	73
AciI	CCGC	3 cut(s)	356, 1619, 2019
AclWI	GGATC	5 cut(s)	91, 490, 790, 1235, 1248
AcoI	YGGCCR	1 cut(s)	1732
AcsI	RAATTY	5 cut(s)	293, 308, 931, 1258, 1546
AcuI	CTGAAG	4 cut(s)	545, 1499, 1647, 1896
AcyI	GRCGYC	1 cut(s)	144
AdeI	CACNNNGTG	2 cut(s)	833, 1575
AfaI	GTAC	7 cut(s)	385, 683, 851, 957, 1226, 1712, 1967
AfiI	CCNNNNNNNGG	2 cut(s)	1049, 1704
AflII	CTTAAG	1 cut(s)	1412
AflIII	ACRYGT	1 cut(s)	678
AjiI	CACGTC	1 cut(s)	1917
AjnI	CCWGG	4 cut(s)	325, 458, 1047, 1602
AjuI	GAANNNNNNNTTGG	2 cut(s)	1131, 1163
AluBI	AGCT	8 cut(s)	263, 613, 659, 692, 1071, 1195, 1738, 2025
AluI	AGCT	8 cut(s)	263, 613, 659, 692, 1071, 1195, 1738, 2025
Alw21I	GWGCWC	2 cut(s)	976, 1362
Alw26I	GTCTC	4 cut(s)	227, 1381, 1695, 1907
AlwI	GGATC	5 cut(s)	91, 490, 790, 1235, 1248
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	1782
AoxI	GGCC	7 cut(s)	349, 720, 1144, 1462, 1525, 1695, 1732
ApeKI	GCWGC	5 cut(s)	592, 692, 1058, 1169, 1937
ApoI	RAATTY	5 cut(s)	293, 308, 931, 1258, 1546
ArsI	GACNNNNNNTTYG	2 cut(s)	1997, 2029
Asp700I	GAANNNNTTC	1 cut(s)	1437
Asp718I	GGTACC	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	1078, 2026
AsuII	TTCGAA	1 cut(s)	1891
AsuNHI	GCTAGC	1 cut(s)	2021
AvaI	CYCGRG	1 cut(s)	1782
AvaII	GGWCC	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	1838
BalI	TGGCCA	1 cut(s)	1734
BamHI	GGATCC	1 cut(s)	1240
BanI	GGYRCC	1 cut(s)	955
BbsI	GAAGAC	2 cut(s)	726, 1161
Bbv12I	GWGCWC	2 cut(s)	976, 1362
BbvI	GCAGC	5 cut(s)	604, 679, 1045, 1156, 1924
BccI	CCATC	3 cut(s)	156, 293, 1312
BceAI	ACGGC	5 cut(s)	336, 387, 707, 1512, 1905
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	4 cut(s)	327, 460, 1049, 1604
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	4 cut(s)	227, 1381, 1695, 1907
BfaI	CTAG	4 cut(s)	264, 416, 831, 2022
BfrI	CTTAAG	1 cut(s)	1412
BglI	GCCNNNNNGGC	1 cut(s)	357
BglII	AGATCT	1 cut(s)	1252
BisI	GCNGC	6 cut(s)	593, 693, 1059, 1170, 1938, 2019
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	6 cut(s)	594, 694, 1060, 1171, 1939, 2020
Bme1390I	CCNGG	4 cut(s)	327, 460, 1049, 1604
Bme18I	GGWCC	1 cut(s)	799
BmeT110I	CYCGRG	1 cut(s)	1782
BmgBI	CACGTC	1 cut(s)	1917
BmgT120I	GGNCC	1 cut(s)	799
BmiI	GGNNCC	3 cut(s)	957, 1242, 1608
BmrFI	CCNGG	4 cut(s)	327, 460, 1049, 1604
BmrI	ACTGGG	2 cut(s)	771, 905
BmsI	GCATC	7 cut(s)	511, 594, 1025, 1396, 1489, 1949, 1994
BmtI	GCTAGC	1 cut(s)	2025
BmuI	ACTGGG	2 cut(s)	771, 905
BpiI	GAAGAC	2 cut(s)	726, 1161
BplI	GAGNNNNNCTC	2 cut(s)	1776, 1808
BpmI	CTGGAG	1 cut(s)	1215
Bpu1102I	GCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	1891
BpuEI	CTTGAG	1 cut(s)	1778
BsaBI	GATNNNNATC	2 cut(s)	1272, 1503
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	1007, 1048, 1236, 1336
BsaWI	WCCGGW	1 cut(s)	2036
BsaXI	ACNNNNNCTCC	4 cut(s)	804, 834, 1213, 1243
Bsc4I	CCNNNNNNNGG	2 cut(s)	1049, 1704
Bse1I	ACTGG	3 cut(s)	766, 900, 1599
Bse3DI	GCAATG	3 cut(s)	249, 1171, 1329
Bse8I	GATNNNNATC	2 cut(s)	1272, 1503
BseBI	CCWGG	4 cut(s)	327, 460, 1049, 1604
BseDI	CCNNGG	4 cut(s)	1007, 1048, 1236, 1336
BseGI	GGATG	2 cut(s)	1496, 1603
BseJI	GATNNNNATC	2 cut(s)	1272, 1503
BseLI	CCNNNNNNNGG	2 cut(s)	1049, 1704
BseMI	GCAATG	3 cut(s)	249, 1171, 1329
BseMII	CTCAG	8 cut(s)	21, 485, 549, 584, 632, 699, 804, 1706
BseNI	ACTGG	3 cut(s)	766, 900, 1599
BseRI	GAGGAG	3 cut(s)	680, 1571, 1787
BseSI	GKGCMC	1 cut(s)	1838
BseXI	GCAGC	5 cut(s)	604, 679, 1045, 1156, 1924
BseYI	CCCAGC	1 cut(s)	1061
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	7 cut(s)	351, 722, 1146, 1464, 1527, 1697, 1734
BshNI	GGYRCC	1 cut(s)	955
BsiHKAI	GWGCWC	2 cut(s)	976, 1362
BsiHKCI	CYCGRG	1 cut(s)	1782
BsiSI	CCGG	2 cut(s)	1465, 2037
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	1049, 1704
BsmAI	GTCTC	4 cut(s)	227, 1381, 1695, 1907
BsmBI	CGTCTC	1 cut(s)	1907
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	7 cut(s)	351, 722, 1146, 1464, 1527, 1697, 1734
BsoBI	CYCGRG	1 cut(s)	1782
Bsp119I	TTCGAA	1 cut(s)	1891
Bsp1286I	GDGCHC	3 cut(s)	976, 1362, 1838
Bsp1407I	TGTACA	1 cut(s)	1965
Bsp143I	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
Bsp1720I	GCTNAGC	1 cut(s)	618
Bsp19I	CCATGG	1 cut(s)	1336
BspACI	CCGC	3 cut(s)	356, 1619, 2019
BspANI	GGCC	7 cut(s)	351, 722, 1146, 1464, 1527, 1697, 1734
BspCNI	CTCAG	8 cut(s)	22, 484, 550, 583, 631, 698, 803, 1705
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	957, 1242, 1608
BspOI	GCTAGC	1 cut(s)	2025
BspPI	GGATC	5 cut(s)	91, 490, 790, 1235, 1248
BspT104I	TTCGAA	1 cut(s)	1891
BspT107I	GGYRCC	1 cut(s)	955
BspTI	CTTAAG	1 cut(s)	1412
BsrDI	GCAATG	3 cut(s)	249, 1171, 1329
BsrGI	TGTACA	1 cut(s)	1965
BsrI	ACTGG	3 cut(s)	766, 900, 1599
BssECI	CCNNGG	4 cut(s)	1007, 1048, 1236, 1336
BssMI	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	1236, 1336
Bst2UI	CCWGG	4 cut(s)	327, 460, 1049, 1604
Bst4CI	ACNGT	7 cut(s)	271, 388, 849, 920, 1186, 1394, 1689
Bst6I	CTCTTC	3 cut(s)	358, 414, 978
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	1412
BstAPI	GCANNNNNTGC	3 cut(s)	353, 833, 1991
BstAUI	TGTACA	1 cut(s)	1965
BstBI	TTCGAA	1 cut(s)	1891
BstC8I	GCNNGC	6 cut(s)	349, 358, 615, 1537, 1736, 2023
BstDEI	CTNAG	8 cut(s)	30, 471, 558, 570, 618, 685, 790, 1692
BstDSI	CCRYGG	1 cut(s)	1336
BstF5I	GGATG	2 cut(s)	1496, 1603
BstFNI	CGCG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	7 cut(s)	86, 213, 498, 785, 1243, 1255, 1507
BstMAI	GTCTC	4 cut(s)	227, 1381, 1695, 1907
BstMBI	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
BstMWI	GCNNNNNNNGC	5 cut(s)	353, 357, 619, 833, 1991
BstNI	CCWGG	4 cut(s)	327, 460, 1049, 1604
BstNSI	RCATGY	4 cut(s)	440, 541, 682, 1539
BstSCI	CCNGG	4 cut(s)	325, 458, 1047, 1602
BstSLI	GKGCMC	1 cut(s)	1838
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	5 cut(s)	604, 679, 1045, 1156, 1924
BstV2I	GAAGAC	2 cut(s)	726, 1161
BstX2I	RGATCY	3 cut(s)	83, 1240, 1252
BstXI	CCANNNNNNTGG	2 cut(s)	155, 809
BstYI	RGATCY	3 cut(s)	83, 1240, 1252
BsuRI	GGCC	7 cut(s)	351, 722, 1146, 1464, 1527, 1697, 1734
BtgI	CCRYGG	1 cut(s)	1336
BtrI	CACGTC	1 cut(s)	1917
BtsCI	GGATG	2 cut(s)	1496, 1603
BtsIMutI	CAGTG	2 cut(s)	893, 1399
Cac8I	GCNNGC	6 cut(s)	349, 358, 615, 1537, 1736, 2023
CaiI	CAGNNNCTG	1 cut(s)	692
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	799
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	7 cut(s)	384, 682, 850, 956, 1225, 1711, 1966
CviQI	GTAC	7 cut(s)	384, 682, 850, 956, 1225, 1711, 1966
DdeI	CTNAG	8 cut(s)	30, 471, 558, 570, 618, 685, 790, 1692
DpnI	GATC	7 cut(s)	85, 212, 497, 784, 1242, 1254, 1506
DpnII	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
DraIII	CACNNNGTG	2 cut(s)	833, 1575
EaeI	YGGCCR	1 cut(s)	1732
Eam1104I	CTCTTC	3 cut(s)	358, 414, 978
EarI	CTCTTC	3 cut(s)	358, 414, 978
Eco130I	CCWWGG	2 cut(s)	1236, 1336
Eco32I	GATATC	1 cut(s)	1566
Eco47I	GGWCC	1 cut(s)	799
Eco57I	CTGAAG	4 cut(s)	545, 1499, 1647, 1896
Eco88I	CYCGRG	1 cut(s)	1782
EcoRI	GAATTC	1 cut(s)	1546
EcoRII	CCWGG	4 cut(s)	325, 458, 1047, 1602
EcoRV	GATATC	1 cut(s)	1566
EcoT14I	CCWWGG	2 cut(s)	1236, 1336
EcoT22I	ATGCAT	1 cut(s)	1112
ErhI	CCWWGG	2 cut(s)	1236, 1336
Esp3I	CGTCTC	1 cut(s)	1907
FalI	AAGNNNNNCTT	2 cut(s)	1131, 1163
FaqI	GGGAC	1 cut(s)	22
FauI	CCCGC	1 cut(s)	349
FauNDI	CATATG	1 cut(s)	1112
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	6 cut(s)	593, 693, 1059, 1170, 1938, 2019
FokI	GGATG	2 cut(s)	1503, 1610
Fsp4HI	GCNGC	6 cut(s)	593, 693, 1059, 1170, 1938, 2019
FspBI	CTAG	4 cut(s)	264, 416, 831, 2022
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	6 cut(s)	593, 693, 1059, 1170, 1938, 2019
GsaI	CCCAGC	1 cut(s)	1065
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	7 cut(s)	351, 722, 1146, 1464, 1527, 1697, 1734
HapII	CCGG	2 cut(s)	1465, 2037
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	1090
HindII	GTYRAC	1 cut(s)	1090
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	7 cut(s)	43, 467, 653, 813, 889, 1789, 2040
HpaII	CCGG	2 cut(s)	1465, 2037
HphI	GGTGA	2 cut(s)	1078, 2026
Hpy166II	GTNNAC	1 cut(s)	1090
Hpy188III	TCNNGA	8 cut(s)	493, 820, 977, 1030, 1151, 1769, 1784, 1874
Hpy8I	GTNNAC	1 cut(s)	1090
Hpy99I	CGWCG	2 cut(s)	821, 1217
HpyAV	CCTTC	7 cut(s)	134, 518, 520, 1157, 1474, 1680, 1871
HpyCH4III	ACNGT	7 cut(s)	271, 388, 849, 920, 1186, 1394, 1689
HpyCH4IV	ACGT	4 cut(s)	284, 970, 1223, 1916
HpyF10VI	GCNNNNNNNGC	5 cut(s)	353, 357, 619, 833, 1991
HpyF3I	CTNAG	8 cut(s)	30, 471, 558, 570, 618, 685, 790, 1692
HpySE526I	ACGT	4 cut(s)	284, 970, 1223, 1916
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	73
KpnI	GGTACC	1 cut(s)	959
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
Lsp1109I	GCAGC	5 cut(s)	604, 679, 1045, 1156, 1924
LweI	GCATC	7 cut(s)	511, 594, 1025, 1396, 1489, 1949, 1994
MaeI	CTAG	4 cut(s)	264, 416, 831, 2022
MaeII	ACGT	4 cut(s)	284, 970, 1223, 1916
MaeIII	GTNAC	5 cut(s)	56, 905, 1000, 2003, 2032
MalI	GATC	7 cut(s)	85, 212, 497, 784, 1242, 1254, 1506
MboI	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
MboII	GAAGA	7 cut(s)	375, 431, 586, 726, 995, 1166, 1625
MfeI	CAATTG	2 cut(s)	168, 1117
MflI	RGATCY	3 cut(s)	83, 1240, 1252
MhlI	GDGCHC	3 cut(s)	976, 1362, 1838
MlsI	TGGCCA	1 cut(s)	1734
MluNI	TGGCCA	1 cut(s)	1734
MlyI	GAGTC	2 cut(s)	822, 883
MmeI	TCCRAC	5 cut(s)	427, 1179, 1236, 1261, 1332
Mox20I	TGGCCA	1 cut(s)	1734
Mph1103I	ATGCAT	1 cut(s)	1112
MroXI	GAANNNNTTC	1 cut(s)	1437
MscI	TGGCCA	1 cut(s)	1734
MseI	TTAA	7 cut(s)	174, 252, 287, 1080, 1302, 1365, 1413
MslI	CAYNNNNRTG	2 cut(s)	341, 1752
Msp20I	TGGCCA	1 cut(s)	1734
MspA1I	CMGCKG	1 cut(s)	1195
MspCI	CTTAAG	1 cut(s)	1412
MspI	CCGG	2 cut(s)	1465, 2037
MspR9I	CCNGG	4 cut(s)	327, 460, 1049, 1604
MunI	CAATTG	2 cut(s)	168, 1117
MvaI	CCWGG	4 cut(s)	327, 460, 1049, 1604
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	5 cut(s)	353, 357, 619, 833, 1991
NcoI	CCATGG	1 cut(s)	1336
NdeI	CATATG	1 cut(s)	1112
NdeII	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
NheI	GCTAGC	1 cut(s)	2021
NlaIV	GGNNCC	3 cut(s)	957, 1242, 1608
NmuCI	GTSAC	4 cut(s)	56, 1000, 2003, 2032
NsiI	ATGCAT	1 cut(s)	1112
NspI	RCATGY	4 cut(s)	440, 541, 682, 1539
NspV	TTCGAA	1 cut(s)	1891
PaeI	GCATGC	1 cut(s)	1539
PaeR7I	CTCGAG	1 cut(s)	1782
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	1437
PfeI	GAWTC	4 cut(s)	43, 467, 653, 1789
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	6 cut(s)	594, 694, 1060, 1171, 1939, 2020
PleI	GAGTC	2 cut(s)	821, 883
PpsI	GAGTC	2 cut(s)	821, 883
PscI	ACATGT	1 cut(s)	678
Psp6I	CCWGG	4 cut(s)	325, 458, 1047, 1602
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	4 cut(s)	325, 458, 1047, 1602
PspN4I	GGNNCC	3 cut(s)	957, 1242, 1608
PspPI	GGNCC	1 cut(s)	799
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	3 cut(s)	83, 1240, 1252
PvuII	CAGCTG	1 cut(s)	1195
RsaI	GTAC	7 cut(s)	385, 683, 851, 957, 1226, 1712, 1967
RsaNI	GTAC	7 cut(s)	384, 682, 850, 956, 1225, 1711, 1966
RseI	CAYNNNNRTG	2 cut(s)	341, 1752
SaqAI	TTAA	7 cut(s)	174, 252, 287, 1080, 1302, 1365, 1413
SatI	GCNGC	6 cut(s)	593, 693, 1059, 1170, 1938, 2019
Sau3AI	GATC	7 cut(s)	83, 210, 495, 782, 1240, 1252, 1504
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	2 cut(s)	822, 883
ScrFI	CCNGG	4 cut(s)	327, 460, 1049, 1604
SduI	GDGCHC	3 cut(s)	976, 1362, 1838
SfaNI	GCATC	7 cut(s)	511, 594, 1025, 1396, 1489, 1949, 1994
Sfr274I	CTCGAG	1 cut(s)	1782
SfuI	TTCGAA	1 cut(s)	1891
SinI	GGWCC	1 cut(s)	799
SlaI	CTCGAG	1 cut(s)	1782
SmiMI	CAYNNNNRTG	2 cut(s)	341, 1752
SmlI	CTYRAG	3 cut(s)	1412, 1782, 1793
SmoI	CTYRAG	3 cut(s)	1412, 1782, 1793
SphI	GCATGC	1 cut(s)	1539
SsiI	CCGC	3 cut(s)	356, 1619, 2019
SspMI	CTAG	4 cut(s)	264, 416, 831, 2022
StyD4I	CCNGG	4 cut(s)	325, 458, 1047, 1602
StyI	CCWWGG	2 cut(s)	1236, 1336
TaaI	ACNGT	7 cut(s)	271, 388, 849, 920, 1186, 1394, 1689
TaiI	ACGT	4 cut(s)	287, 973, 1226, 1919
TaqI	TCGA	3 cut(s)	1404, 1783, 1891
TatI	WGTACW	3 cut(s)	681, 849, 1965
TauI	GCSGC	1 cut(s)	2021
TfiI	GAWTC	4 cut(s)	43, 467, 653, 1789
Tru1I	TTAA	7 cut(s)	174, 252, 287, 1080, 1302, 1365, 1413
Tru9I	TTAA	7 cut(s)	174, 252, 287, 1080, 1302, 1365, 1413
TscAI	CASTG	2 cut(s)	900, 1399
TseFI	GTSAC	4 cut(s)	56, 1000, 2003, 2032
TseI	GCWGC	5 cut(s)	592, 692, 1058, 1169, 1937
Tsp45I	GTSAC	4 cut(s)	56, 1000, 2003, 2032
TspDTI	ATGAA	5 cut(s)	423, 996, 1340, 1446, 1559
TspGWI	ACGGA	2 cut(s)	1230, 1830
TspRI	CASTG	2 cut(s)	900, 1399
Vha464I	CTTAAG	1 cut(s)	1412
VpaK11BI	GGWCC	1 cut(s)	799
XapI	RAATTY	5 cut(s)	293, 308, 931, 1258, 1546
XceI	RCATGY	4 cut(s)	440, 541, 682, 1539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	1782
XmnI	GAANNNNTTC	1 cut(s)	1437
XspI	CTAG	4 cut(s)	264, 416, 831, 2022
Zsp2I	ATGCAT	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.