Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004771

Physical Location & Seq

Genomic Coordinates Forward (+)

7591990 .. 7592271

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGATCTCACTCACTCCCACTCCCTTTCTCGTCCACAGCACAAGCTTCGCCGTCATTTTTGTCTTTCTGACCCCAAACTCTACAAGGGTGCACCCTAGCACTGGTAGCCTCCCTTTCAGGATCCGATGCTCTTTAGCCGGTTTGGCCGTGCAGGAGGCGCCCAAGTCCTCCGAGGAGAGGGAGTTGAGCTCCGAGCTCTACGCGTCGATGCCATTCTCGGCAGTGACGGGGGCAAAAAGGCTGGTGTTGGTGAGGCACGGGCAGAGCATGTGGAACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

94

Amino Acids

10.21

Weight (kDa)

9.18

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620
fragaria_vesca	FvH4_3g24210
malus_domestica	MD11G1158000.v1.1
prunus_persica	Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1
pyrus_communis	pycom03g09120 pycom03g09130 pycom11g12830
rosa_chinensis	RchiOBHm_Chr5g0043311
rosa_laevigata	RLG00000034178
rosa_multiflora	Rmu_sc0000060.1_g000001 Rmu_sc0000060.1_g000024 Rmu_sc0017676.1_g000001 Rmu_sc0025644.1_g000001 Rmu_sc0042577.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037510 Rroxscaffold_7G00214910
rosa_rugosa	Rorug05G0205200
rosa_samantha	Rh5AG290700 Rh5AG290900 Rh5BG297300 Rh5CG327100 Rh5DG306900
rosa_wichuraiana	Rw5G026900 Rw5G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	203
AclWI	GGATC	2 cut(s)	115, 128
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	101, 177
AflIII	ACRYGT	1 cut(s)	201
AluBI	AGCT	3 cut(s)	45, 189, 196
AluI	AGCT	3 cut(s)	45, 189, 196
Alw21I	GWGCWC	3 cut(s)	93, 191, 198
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	115, 128
AoxI	GGCC	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	191, 198
Bbv12I	GWGCWC	3 cut(s)	93, 191, 198
BceAI	ACGGC	2 cut(s)	35, 131
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	122, 159
BmsI	GCATC	2 cut(s)	116, 198
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 177
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	101, 177
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	3 cut(s)	93, 191, 198
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	101, 177
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	3 cut(s)	93, 191, 198
Bsp143I	GATC	2 cut(s)	3, 120
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	122, 159
BspPI	GGATC	2 cut(s)	115, 128
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	3, 120
BssNI	GRCGYC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	6, 123
BstMBI	GATC	2 cut(s)	3, 120
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 143, 157
BstNSI	RCATGY	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	93
BstUI	CGCG	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	99, 228
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	137
CseI	GACGC	1 cut(s)	192
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	7 cut(s)	45, 108, 137, 146, 189, 196, 241
CviKI_1	RGCY	7 cut(s)	45, 108, 137, 146, 189, 196, 241
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	2 cut(s)	5, 122
DpnII	GATC	2 cut(s)	3, 120
EaeI	YGGCCR	1 cut(s)	144
Ecl136II	GAGCTC	2 cut(s)	189, 196
Eco24I	GRGCYC	2 cut(s)	191, 198
Eco53kI	GAGCTC	2 cut(s)	189, 196
EcoICRI	GAGCTC	2 cut(s)	189, 196
EcoT38I	GRGCYC	2 cut(s)	191, 198
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
FaeI	CATG	1 cut(s)	271
FaiI	YATR	1 cut(s)	269
FatI	CATG	1 cut(s)	267
FriOI	GRGCYC	2 cut(s)	191, 198
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	43
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	34, 91
Hpy188I	TCNGA	4 cut(s)	69, 125, 172, 193
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	2 cut(s)	34, 91
Hpy99I	CGWCG	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	91, 151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 143, 157
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	3, 120
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	87, 103, 137, 151, 227
LweI	GCATC	2 cut(s)	116, 198
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	5, 122
MboI	GATC	2 cut(s)	3, 120
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	3 cut(s)	93, 191, 198
MluI	ACGCGT	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	119, 148, 166, 171, 178, 246
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	105, 143, 157
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	2 cut(s)	3, 120
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	122, 159
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	271
PluTI	GGCGCC	1 cut(s)	161
Psp124BI	GAGCTC	2 cut(s)	191, 198
PspN4I	GGNNCC	2 cut(s)	122, 159
PsuI	RGATCY	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	191, 198
Sau3AI	GATC	2 cut(s)	3, 120
SduI	GDGCHC	3 cut(s)	93, 191, 198
SetI	ASST	3 cut(s)	47, 191, 198
SfaNI	GCATC	2 cut(s)	116, 198
SfoI	GGCGCC	1 cut(s)	159
SspDI	GGCGCC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	2 cut(s)	191, 198
TaqI	TCGA	1 cut(s)	206
TscAI	CASTG	2 cut(s)	106, 228
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspRI	CASTG	2 cut(s)	106, 228
VneI	GTGCAC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.