Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000060.1

Orthogroup ID

OG0004771

Physical Location & Seq

Genomic Coordinates Reverse (-)

126556 .. 126942

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000060.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgctatcagtcactccccctctccttctccacagaaactccaccgtcttcttcttcccatcattcccaatccgtacgaggcctccgagccccttgagtatctcacgatgctcttcgggcctccaagaggccaaggacacagatcagctcccatcagacgagctctccgcctcgtcgccgttcctggccgtcaaggcggcgaagagggtggttctggtgaggcacgggcagagcacgtggaacgaggaaggtaggatccaaggcagctccaatttctcagtgctcaccaacaaaggcgaggctcagacccagacttcccgccaaatgctcatcggagatgccttcgatgtctgcttcgccaggtcggcttctgtactttcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

9.3

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620
fragaria_vesca	FvH4_3g24210
malus_domestica	MD11G1158000.v1.1
prunus_persica	Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1
pyrus_communis	pycom03g09120 pycom03g09130 pycom11g12830
rosa_chinensis	RchiOBHm_Chr5g0043311
rosa_laevigata	RLG00000034178
rosa_multiflora	Rmu_sc0000060.1_g000001 Rmu_sc0000060.1_g000024 Rmu_sc0017676.1_g000001 Rmu_sc0025644.1_g000001 Rmu_sc0042577.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037510 Rroxscaffold_7G00214910
rosa_rugosa	Rorug05G0205200
rosa_samantha	Rh5AG290700 Rh5AG290900 Rh5BG297300 Rh5CG327100 Rh5DG306900
rosa_wichuraiana	Rw5G026900 Rw5G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	168, 197, 319
AclWI	GGATC	2 cut(s)	250, 263
AcoI	YGGCCR	1 cut(s)	186
AcvI	CACGTG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	76, 375
AfiI	CCNNNNNNNGG	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	183, 359
AluBI	AGCT	3 cut(s)	148, 163, 267
AluI	AGCT	3 cut(s)	148, 163, 267
Alw21I	GWGCWC	3 cut(s)	165, 236, 285
AlwI	GGATC	2 cut(s)	250, 263
AoxI	GGCC	4 cut(s)	80, 118, 129, 186
ApeKI	GCWGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	229, 277
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	92, 165
BbrPI	CACGTG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	3 cut(s)	165, 236, 285
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	67, 160
BceAI	ACGGC	2 cut(s)	163, 173
BciT130I	CCWGG	2 cut(s)	185, 361
BglI	GCCNNNNNGGC	2 cut(s)	194, 365
BisI	GCNGC	2 cut(s)	198, 265
BlsI	GCNGC	2 cut(s)	199, 266
Bme1390I	CCNGG	2 cut(s)	185, 361
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	2 cut(s)	185, 361
BmsI	GCATC	2 cut(s)	98, 328
BpiI	GAAGAC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	132, 259
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 67, 97, 149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	185, 361
BseDI	CCNNGG	2 cut(s)	132, 259
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	291, 317
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	4 cut(s)	82, 120, 131, 188
BsiHKAI	GWGCWC	3 cut(s)	165, 236, 285
BsiWI	CGTACG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	4 cut(s)	82, 120, 131, 188
Bsp1286I	GDGCHC	4 cut(s)	92, 165, 236, 285
Bsp143I	GATC	2 cut(s)	142, 255
BspACI	CCGC	3 cut(s)	168, 197, 319
BspANI	GGCC	4 cut(s)	82, 120, 131, 188
BspCNI	CTCAG	2 cut(s)	290, 316
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	2 cut(s)	250, 263
BspQI	GCTCTTC	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	132, 259
BssMI	GATC	2 cut(s)	142, 255
BssT1I	CCWWGG	2 cut(s)	132, 259
Bst2UI	CCWGG	2 cut(s)	185, 361
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	118, 197
BstBAI	YACGTR	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	277, 303
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	145, 258
BstMBI	GATC	2 cut(s)	142, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 194, 365
BstNI	CCWGG	2 cut(s)	185, 361
BstSCI	CCNGG	2 cut(s)	183, 359
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	82, 120, 131, 188
BtsIMutI	CAGTG	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	75, 374
CviQI	GTAC	2 cut(s)	75, 374
DdeI	CTNAG	2 cut(s)	277, 303
DpnI	GATC	2 cut(s)	144, 257
DpnII	GATC	2 cut(s)	142, 255
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	118, 197
EarI	CTCTTC	2 cut(s)	118, 197
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	132, 259
Eco147I	AGGCCT	1 cut(s)	82
Eco24I	GRGCYC	2 cut(s)	92, 165
Eco53kI	GAGCTC	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	183, 359
EcoT14I	CCWWGG	2 cut(s)	132, 259
EcoT38I	GRGCYC	2 cut(s)	92, 165
ErhI	CCWWGG	2 cut(s)	132, 259
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	198, 265
FriOI	GRGCYC	2 cut(s)	92, 165
Fsp4HI	GCNGC	2 cut(s)	198, 265
GluI	GCNGC	2 cut(s)	198, 265
HaeIII	GGCC	4 cut(s)	82, 120, 131, 188
HphI	GGTGA	2 cut(s)	229, 277
Hpy188I	TCNGA	4 cut(s)	87, 157, 306, 335
Hpy188III	TCNNGA	1 cut(s)	105
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	35, 242, 352
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 194, 365
HpyF3I	CTNAG	2 cut(s)	277, 303
HpySE526I	ACGT	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	142, 255
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	153, 272
LpnPI	CCDG	6 cut(s)	170, 197, 200, 323, 346, 373
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	98, 328
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	144, 257
MboI	GATC	2 cut(s)	142, 255
MboII	GAAGA	5 cut(s)	40, 43, 46, 105, 214
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	4 cut(s)	92, 165, 236, 285
MluCI	AATT	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	185, 361
MvaI	CCWGG	2 cut(s)	185, 361
MwoI	GCNNNNNNNGC	3 cut(s)	117, 194, 365
NdeII	GATC	2 cut(s)	142, 255
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
Pfl23II	CGTACG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	199, 266
PmaCI	CACGTG	1 cut(s)	237
PmlI	CACGTG	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	183, 359
PspCI	CACGTG	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	183, 359
PspLI	CGTACG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	2 cut(s)	76, 375
RsaNI	GTAC	2 cut(s)	75, 374
SacI	GAGCTC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	118
SatI	GCNGC	2 cut(s)	198, 265
Sau3AI	GATC	2 cut(s)	142, 255
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	185, 361
SduI	GDGCHC	4 cut(s)	92, 165, 236, 285
SetI	ASST	6 cut(s)	150, 165, 239, 253, 269, 365
SfaNI	GCATC	2 cut(s)	98, 328
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	271
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	168, 197, 319
SstI	GAGCTC	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	183, 359
StyI	CCWWGG	2 cut(s)	132, 259
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	271
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	200
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.