Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042577.1

Orthogroup ID

OG0004771

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1331

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggggattccacctcttcaacccggttggcttaatgggtttgaggatagagtcgtggaagctgtgtgggatcaatctgagaaggcctggcagtctctgctagaagaagtagctgatgaagcagcaccggaaaaaaatgttgttgcagttggtcatcctgcattgcacatagcattgctggggcactgcctgaatttgacaaaagaatggttgggatcatttcatcttgatacaggaagcatcagtatcattgattttccagatggttctagtgggagaggagttattcggtgcataaactatactgcccatttgggaagatggtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

4.98

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620
fragaria_vesca	FvH4_3g24210
malus_domestica	MD11G1158000.v1.1
prunus_persica	Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1
pyrus_communis	pycom03g09120 pycom03g09130 pycom11g12830
rosa_chinensis	RchiOBHm_Chr5g0043311
rosa_laevigata	RLG00000034178
rosa_multiflora	Rmu_sc0000060.1_g000001 Rmu_sc0000060.1_g000024 Rmu_sc0017676.1_g000001 Rmu_sc0025644.1_g000001 Rmu_sc0042577.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037510 Rroxscaffold_7G00214910
rosa_rugosa	Rorug05G0205200
rosa_samantha	Rh5AG290700 Rh5AG290900 Rh5BG297300 Rh5CG327100 Rh5DG306900
rosa_wichuraiana	Rw5G026900 Rw5G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	78, 223
AcsI	RAATTY	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	62, 113
AluI	AGCT	2 cut(s)	62, 113
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	78, 223
AlwNI	CAGNNNCTG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	257, 315
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	101, 270
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	24, 88
BmrFI	CCNGG	2 cut(s)	24, 88
BmsI	GCATC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	161, 173
BseBI	CCWGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	154
BseMI	GCAATG	2 cut(s)	161, 173
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	24, 128
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	70, 215
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	70
BspPI	GGATC	2 cut(s)	78, 223
BsrDI	GCAATG	2 cut(s)	161, 173
BssMI	GATC	2 cut(s)	70, 215
Bst2UI	CCWGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	73, 218
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	70, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 119
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	22, 86
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
CaiI	CAGNNNCTG	1 cut(s)	97
CviJI	RGCY	4 cut(s)	31, 62, 86, 113
CviKI_1	RGCY	4 cut(s)	31, 62, 86, 113
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	72, 217
DpnII	GATC	2 cut(s)	70, 215
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	86
FaiI	YATR	3 cut(s)	170, 296, 303
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	101, 270
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	24, 128
HinfI	GANTC	2 cut(s)	7, 51
HpaII	CCGG	2 cut(s)	24, 128
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	227, 260
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	4 cut(s)	146, 161, 166, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 119
HpyF3I	CTNAG	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	70, 215
LpnPI	CCDG	9 cut(s)	37, 73, 100, 141, 164, 171, 203, 219, 273
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	101, 270
MalI	GATC	2 cut(s)	72, 217
MboI	GATC	2 cut(s)	70, 215
MboII	GAAGA	2 cut(s)	8, 116
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	24, 37, 272
MseI	TTAA	1 cut(s)	33
MspI	CCGG	2 cut(s)	24, 128
MspR9I	CCNGG	2 cut(s)	24, 88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	97, 119
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	70, 215
PceI	AGGCCT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	70, 215
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	24, 88
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	3 cut(s)	16, 64, 115
SfaNI	GCATC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	193
SseBI	AGGCCT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	101, 270
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	22, 86
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	132, 212
TspRI	CASTG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	2 cut(s)	101, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.