Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004771

Physical Location & Seq

Genomic Coordinates Reverse (-)

39907539 .. 39911569

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTATCAGTCACTCCCCATCTCCTTCTCCACAGAAACTCCACCCTCTTCTTCTTCCCATCATTCCCAATCCGTACGAGGCCTCCGAGCCCCTTGAGTATCTCACGATGCTCTTCGGGCCTCCAAGAGGCCAAGGACACAGATCAGCTCCGATCGGACGAGCTCTCCGCCTCGTCTCCGTTCCCCGCCGTCAAGGCGGCGAAGAGGGTGGTTCTGGTGAGGCACGGGCAGAGCACGTGGAACGAGGAAGGTAGGATCCAAGGCAGCTCCAATTTCTCAGTGCTCACCAACAAAGGCGAGGCTCAGGCCCAGACTTCCCGCCAAATGCTCATCGGAGATGCCTTCGATGTCTGCTTCGCCAGTCCCTTGGCACGGTCAAAGAGAACAGCTGAAATTATATGGGAAACTCGCAAAGAGGAAATGATTATGGATTTTGATTTGAGGGAAATCGACTTGTACTCATTTCAAGGCCTCTTAAAGCATGAGGGAAAAGAAAAGTTTGGTGCAGCTTTTCAGAAATGGCAGGTAGATGCACCAAATTTTAGCATTGATGATCATTATCCAGTGAGAGAGTTATGGGCACGTGCTAGGAGCTACTGGACTAGAATACTATTGCATGAAAGCAGGTCTGTTCTTGTGGTTGCTCATAGTGCTGTTAATCAGGCTCTCGTTGCAACAGCCATTGGTATTTTTCCATTCTCTGTAGTAGATGTACCTGAAAAGTCTTTGCAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

245

Amino Acids

27.63

Weight (kDa)

8.57

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	70 - 230	7.1e-35	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620
fragaria_vesca	FvH4_3g24210
malus_domestica	MD11G1158000.v1.1
prunus_persica	Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1
pyrus_communis	pycom03g09120 pycom03g09130 pycom11g12830
rosa_chinensis	RchiOBHm_Chr5g0043311
rosa_laevigata	RLG00000034178
rosa_multiflora	Rmu_sc0000060.1_g000001 Rmu_sc0000060.1_g000024 Rmu_sc0017676.1_g000001 Rmu_sc0025644.1_g000001 Rmu_sc0042577.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037510 Rroxscaffold_7G00214910
rosa_rugosa	Rorug05G0205200
rosa_samantha	Rh5AG290700 Rh5AG290900 Rh5BG297300 Rh5CG327100 Rh5DG306900
rosa_wichuraiana	Rw5G026900 Rw5G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	514, 615
AciI	CCGC	4 cut(s)	168, 186, 197, 319
AclWI	GGATC	2 cut(s)	250, 263
AcsI	RAATTY	1 cut(s)	538
AcvI	CACGTG	2 cut(s)	237, 584
AfaI	GTAC	3 cut(s)	76, 458, 714
AfiI	CCNNNNNNNGG	2 cut(s)	127, 372
AgsI	TTSAA	1 cut(s)	467
AluBI	AGCT	6 cut(s)	148, 163, 267, 389, 509, 594
AluI	AGCT	6 cut(s)	148, 163, 267, 389, 509, 594
Alw21I	GWGCWC	3 cut(s)	165, 236, 285
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	250, 263
AoxI	GGCC	5 cut(s)	80, 118, 129, 306, 469
ApeKI	GCWGC	2 cut(s)	264, 506
ApoI	RAATTY	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	118, 307
AsuHPI	GGTGA	2 cut(s)	229, 277
BaeGI	GKGCMC	1 cut(s)	583
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	92, 165
BbrPI	CACGTG	2 cut(s)	237, 584
Bbv12I	GWGCWC	3 cut(s)	165, 236, 285
BbvI	GCAGC	2 cut(s)	276, 518
BccI	CCATC	2 cut(s)	27, 67
BceAI	ACGGC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	588, 603
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	2 cut(s)	514, 615
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	3 cut(s)	198, 265, 507
BlsI	GCNGC	3 cut(s)	199, 266, 508
BmgT120I	GGNCC	2 cut(s)	118, 307
BmiI	GGNNCC	1 cut(s)	257
BmsI	GCATC	3 cut(s)	98, 328, 520
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	115
BsaAI	YACGTR	2 cut(s)	237, 584
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	132, 259, 366
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 67, 97, 149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 372
Bse1I	ACTGG	3 cut(s)	360, 563, 602
Bse8I	GATNNNNATC	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	132, 259, 366
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	127, 372
BseMII	CTCAG	2 cut(s)	291, 317
BseNI	ACTGG	3 cut(s)	360, 563, 602
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	2 cut(s)	276, 518
BsgI	GTGCAG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	5 cut(s)	82, 120, 131, 308, 471
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	3 cut(s)	165, 236, 285
BsiWI	CGTACG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	127, 372
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	5 cut(s)	82, 120, 131, 308, 471
Bsp1286I	GDGCHC	5 cut(s)	92, 165, 236, 285, 583
Bsp143I	GATC	4 cut(s)	142, 152, 255, 553
BspACI	CCGC	4 cut(s)	168, 186, 197, 319
BspANI	GGCC	5 cut(s)	82, 120, 131, 308, 471
BspCNI	CTCAG	2 cut(s)	290, 316
BspLI	GGNNCC	1 cut(s)	257
BspMI	ACCTGC	2 cut(s)	514, 615
BspPI	GGATC	2 cut(s)	250, 263
BspQI	GCTCTTC	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	360, 563, 602
BssECI	CCNNGG	3 cut(s)	132, 259, 366
BssMI	GATC	4 cut(s)	142, 152, 255, 553
BssT1I	CCWWGG	3 cut(s)	132, 259, 366
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	3 cut(s)	53, 118, 197
BstBAI	YACGTR	2 cut(s)	237, 584
BstDEI	CTNAG	2 cut(s)	277, 303
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstKTI	GATC	4 cut(s)	145, 155, 258, 556
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	4 cut(s)	142, 152, 255, 553
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 194, 650, 671
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	276, 518
BstX2I	RGATCY	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	5 cut(s)	82, 120, 131, 308, 471
BtsIMutI	CAGTG	2 cut(s)	285, 570
BveI	ACCTGC	2 cut(s)	514, 615
Cfr13I	GGNCC	2 cut(s)	118, 307
Csp6I	GTAC	3 cut(s)	75, 457, 713
CviAII	CATG	2 cut(s)	482, 617
CviQI	GTAC	3 cut(s)	75, 457, 713
DdeI	CTNAG	2 cut(s)	277, 303
DpnI	GATC	4 cut(s)	144, 154, 257, 555
DpnII	GATC	4 cut(s)	142, 152, 255, 553
Eam1104I	CTCTTC	3 cut(s)	53, 118, 197
EarI	CTCTTC	3 cut(s)	53, 118, 197
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	132, 259, 366
Eco147I	AGGCCT	2 cut(s)	82, 471
Eco24I	GRGCYC	2 cut(s)	92, 165
Eco53kI	GAGCTC	1 cut(s)	163
Eco72I	CACGTG	2 cut(s)	237, 584
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoT14I	CCWWGG	3 cut(s)	132, 259, 366
EcoT38I	GRGCYC	2 cut(s)	92, 165
ErhI	CCWWGG	3 cut(s)	132, 259, 366
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	2 cut(s)	485, 620
FaiI	YATR	8 cut(s)	398, 400, 428, 483, 577, 618, 648, 736
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	481, 616
FauI	CCCGC	2 cut(s)	193, 326
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	198, 265, 507
FriOI	GRGCYC	2 cut(s)	92, 165
Fsp4HI	GCNGC	3 cut(s)	198, 265, 507
FspBI	CTAG	2 cut(s)	588, 603
GluI	GCNGC	3 cut(s)	198, 265, 507
HaeIII	GGCC	5 cut(s)	82, 120, 131, 308, 471
Hin1II	CATG	2 cut(s)	485, 620
HphI	GGTGA	2 cut(s)	229, 277
Hpy188I	TCNGA	5 cut(s)	87, 152, 157, 335, 516
Hpy188III	TCNNGA	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	35, 242, 352
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	2 cut(s)	236, 583
HpyCH4V	TGCA	5 cut(s)	506, 533, 616, 674, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 194, 650, 671
HpyF3I	CTNAG	2 cut(s)	277, 303
HpySE526I	ACGT	2 cut(s)	236, 583
Hsp92II	CATG	2 cut(s)	485, 620
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	142, 152, 255, 553
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	153, 272, 591
Lsp1109I	GCAGC	2 cut(s)	276, 518
LweI	GCATC	3 cut(s)	98, 328, 520
MaeI	CTAG	2 cut(s)	588, 603
MaeII	ACGT	2 cut(s)	236, 583
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	4 cut(s)	144, 154, 257, 555
MboI	GATC	4 cut(s)	142, 152, 255, 553
MboII	GAAGA	5 cut(s)	40, 43, 46, 105, 214
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	5 cut(s)	92, 165, 236, 285, 583
MluCI	AATT	3 cut(s)	271, 393, 538
MseI	TTAA	2 cut(s)	476, 657
MspA1I	CMGCKG	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	117, 194, 650, 671
NdeII	GATC	4 cut(s)	142, 152, 255, 553
NlaIII	CATG	2 cut(s)	485, 620
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	2 cut(s)	82, 471
PciSI	GCTCTTC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
Pfl23II	CGTACG	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	199, 266, 508
Ple19I	CGATCG	1 cut(s)	155
PmaCI	CACGTG	2 cut(s)	237, 584
PmlI	CACGTG	2 cut(s)	237, 584
Ppu21I	YACGTR	2 cut(s)	237, 584
Psp124BI	GAGCTC	1 cut(s)	165
PspCI	CACGTG	2 cut(s)	237, 584
PspLI	CGTACG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	118, 307
PsuI	RGATCY	1 cut(s)	255
PvuI	CGATCG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	3 cut(s)	76, 458, 714
RsaNI	GTAC	3 cut(s)	75, 457, 713
SacI	GAGCTC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	476, 657
SatI	GCNGC	3 cut(s)	198, 265, 507
Sau3AI	GATC	4 cut(s)	142, 152, 255, 553
Sau96I	GGNCC	2 cut(s)	118, 307
SduI	GDGCHC	5 cut(s)	92, 165, 236, 285, 583
SfaNI	GCATC	3 cut(s)	98, 328, 520
SfcI	CTRYAG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	271, 393, 538
SseBI	AGGCCT	2 cut(s)	82, 471
SsiI	CCGC	4 cut(s)	168, 186, 197, 319
SspMI	CTAG	2 cut(s)	588, 603
SstI	GAGCTC	1 cut(s)	165
StuI	AGGCCT	2 cut(s)	82, 471
StyI	CCWWGG	3 cut(s)	132, 259, 366
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	2 cut(s)	239, 586
TaqI	TCGA	2 cut(s)	345, 450
TasI	AATT	3 cut(s)	271, 393, 538
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	476, 657
Tru9I	TTAA	2 cut(s)	476, 657
TscAI	CASTG	2 cut(s)	285, 570
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	264, 506
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	2 cut(s)	62, 168
TspRI	CASTG	2 cut(s)	285, 570
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	538
XspI	CTAG	2 cut(s)	588, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.