Rorug05G0205200

Phosphoglycerate mutase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
20490100 .. 20493704
3605 bp
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UTR
Exon/CDS
Intron
Rorug05G0205200.1

Sequence Viewer

Length: 1569 bp
ATGGAAGTAGCAGTGGCTAGTTGGGTAGCACTGAGCCTTGTTTTTGTTAGCATAGTAGTAAGATGGGCATGGGGTGTGCTGGATTGGTTATGGCTGAAGCCGAAGAAGCTTGAAAGATGTTTGAGGGAGCAAGGCCTTAAAGGCAATTCCTACAGGCTCTTTTATGGAGACATGAAGGAAAACTCTGTCATGCTCGCACAAGCAAAATCCAAACCCATGAACCTCTCAAGCTCCCATGACATAGCATCACGATTCATCCCTTTTCTCGATCAAACCGTGAAAACTTACGGTAAAAACTCTTTTGTTTGGATTGGCCCCATACCAAGGGTGAACATTATGGATCCTGCAGATGTGAAAGATGTCTTCACAAAACTAGATGATTTCCGGAGGCCAGCAACAAATCCACTTATCAAGTTGCTAATAACAGGTATTGCAAGCTATGAAGATGAGAAATGGGCTAAACATAGAAGAATCATCAACCCAACGTTCCATGCAGAGAAGCTAAAGCGTATGTTACCGGCATTTCACCAAAGTTGTGATCAGATGATTAAGGAGTGGGAGAGCTGGGTCTCAAAACAGGGTTCATCATGTGAGTTGGATGTCTGGCCTTCTCTTCAAAATTTAACGGCTGATGCGATTTCTCGAACAGCGTTTGGAAGTAGCTATGAAGAAGGTAGAAAAATATTTAAACTCCTAAAAGAGCAAACAGCATATACAATAAAAAGCTTGCAAAGTGTTTACATTCCAGGATGGAGGTTTCTACCAACTAAGATGAACAACAGGATGACGCAAGTTGACAAAGAAATAACAGGTTTACTCAAGGGTATTATAAATAAAAGAGAGCAGGCCATTAAGGCAGGTGAAGCAACCAAAGATGACTTATTAGGTGCACTTATGGAATCAAACTTGAACGACATTCAGGAACATGGGAAGAACAACAAAGATGTTGGGATGAGTACTGAAGACGTGATTGGGGAGTGTAAGCTCTTTTACTATGCCGGGCAAGAGACCACTTCAGTATTGCTGGTTTGGACAGTGGTTTTACTTGGTCAAAATCAGATTTGGCAAGATCGAGCAAGACAAGAGGTTCTGCAAGTCTTTGGAAGCAACAAGCCAGACTTTGATGGCCTAACTCACCTTAAAGTTGTAACCATGATTTTACTTGAAGTTCTTCGATTGTACCCAGCACTGGTTGTGCTTTCTCGAACCACTAACAAGATCATAGAACTCGGGAAATTCTCACTACCAGCTGGAGTCGAAGTGGGCTTATCAACACTGCTCATTCACCGCGACAAGGAACTGTGGGGTGATGATGCAAACGAGTTCAAGCCAGAGAGGTTTTTAAAAGGAGTTTCTAAGGCAACAAAGAGCCCATTCTCATTCATCCCTTTCGGAGGCGGTCCTCGAATTTGCATTGGACAAAACTTTGCGCTGACAGAGGCAAAATTGGCCATAGCATTGATCTTGCAACACTTTACCTTTGTGCTTTCTCCATCTTATGCTCATGCTCCTTCTGCACCTATGATTAAACCACAGTATGGTGTTCCTATCATTCTACAGAAGCGTTAA

Protein Analysis

522

Amino Acids

59.08

Weight (kDa)

9.27

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 498 1.6e-82 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AarI CACCTGC 1 cut(s) 848
Acc36I ACCTGC 1 cut(s) 848
AccB7I CCANNNNNTGG 1 cut(s) 1538
AccII CGCG 1 cut(s) 1290
AccIII TCCGGA 1 cut(s) 384
AciI CCGC 2 cut(s) 1288, 1398
AclI AACGTT 1 cut(s) 485
AclWI GGATC 2 cut(s) 335, 348
AcoI YGGCCR 1 cut(s) 1449
AcsI RAATTY 3 cut(s) 619, 1235, 1407
AcuI CTGAAG 3 cut(s) 116, 981, 999
AfaI GTAC 2 cut(s) 958, 1181
AfiI CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1394, 1538
AgsI TTSAA 5 cut(s) 113, 617, 910, 1166, 1327
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 1 cut(s) 745
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
AluBI AGCT 9 cut(s) 109, 231, 438, 502, 564, 663, 726, 985, 1250
AluI AGCT 9 cut(s) 109, 231, 438, 502, 564, 663, 726, 985, 1250
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 3 cut(s) 162, 574, 1001
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 2 cut(s) 335, 348
Ama87I CYCGRG 1 cut(s) 1229
Aor13HI TCCGGA 1 cut(s) 384
AoxI GGCC 7 cut(s) 133, 313, 389, 605, 846, 1126, 1449
ApaLI GTGCAC 1 cut(s) 888
ApoI RAATTY 3 cut(s) 619, 1235, 1407
Asp700I GAANNNNTTC 1 cut(s) 1170
AspLEI GCGC 1 cut(s) 1432
AspS9I GGNCC 2 cut(s) 314, 1400
AsuC2I CCSGG 1 cut(s) 1000
AsuHPI GGTGA 6 cut(s) 340, 518, 872, 1127, 1277, 1319
AvaI CYCGRG 1 cut(s) 1229
AvaII GGWCC 1 cut(s) 1400
BaeGI GKGCMC 1 cut(s) 892
BalI TGGCCA 1 cut(s) 1451
BamHI GGATCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 1373
BbsI GAAGAC 2 cut(s) 355, 969
Bbv12I GWGCWC 1 cut(s) 892
BccI CCATC 4 cut(s) 57, 744, 1118, 1501
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 1 cut(s) 747
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 1000
BcoDI GTCTC 3 cut(s) 162, 574, 1001
BfaI CTAG 2 cut(s) 18, 374
BfmI CTRYAG 3 cut(s) 151, 345, 1556
BfuAI ACCTGC 1 cut(s) 848
BglI GCCNNNNNGGC 2 cut(s) 141, 854
BmcAI AGTACT 1 cut(s) 958
Bme1390I CCNGG 2 cut(s) 747, 1000
Bme18I GGWCC 1 cut(s) 1400
BmeT110I CYCGRG 1 cut(s) 1229
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 2 cut(s) 314, 1400
BmiI GGNNCC 2 cut(s) 316, 342
BmrFI CCNGG 2 cut(s) 747, 1000
BmsI GCATC 3 cut(s) 254, 622, 1303
BpiI GAAGAC 2 cut(s) 355, 969
BpmI CTGGAG 1 cut(s) 1272
BpuEI CTTGAG 2 cut(s) 211, 803
BpuMI CCSGG 1 cut(s) 1000
BsaI GGTCTC 2 cut(s) 574, 1001
BsaJI CCNNGG 1 cut(s) 323
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 1245, 1275
Bsc4I CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1394, 1538
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 1194
BseAI TCCGGA 1 cut(s) 384
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 6 cut(s) 255, 604, 755, 789, 957, 1383
BseLI CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1394, 1538
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 1194
BseSI GKGCMC 1 cut(s) 892
BseYI CCCAGC 2 cut(s) 564, 1183
BsgI GTGCAG 1 cut(s) 1500
Bsh1236I CGCG 1 cut(s) 1290
BshFI GGCC 7 cut(s) 135, 315, 391, 607, 848, 1128, 1451
BsiHKAI GWGCWC 1 cut(s) 892
BsiHKCI CYCGRG 1 cut(s) 1229
BsiSI CCGG 3 cut(s) 385, 518, 999
BslI CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1394, 1538
BsmAI GTCTC 3 cut(s) 162, 574, 1001
BsnI GGCC 7 cut(s) 135, 315, 391, 607, 848, 1128, 1451
Bso31I GGTCTC 2 cut(s) 574, 1001
BsoBI CYCGRG 1 cut(s) 1229
Bsp1286I GDGCHC 2 cut(s) 892, 1373
Bsp13I TCCGGA 1 cut(s) 384
Bsp143I GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
BspACI CCGC 2 cut(s) 1288, 1398
BspANI GGCC 7 cut(s) 135, 315, 391, 607, 848, 1128, 1451
BspCNI CTCAG 1 cut(s) 24
BspEI TCCGGA 1 cut(s) 384
BspFNI CGCG 1 cut(s) 1290
BspLI GGNNCC 2 cut(s) 316, 342
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 848
BspPI GGATC 2 cut(s) 335, 348
BspTNI GGTCTC 2 cut(s) 574, 1001
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 1 cut(s) 1194
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 5 cut(s) 277, 290, 1036, 1302, 1536
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 5 cut(s) 195, 393, 436, 728, 846
BstDEI CTNAG 3 cut(s) 32, 768, 1356
BstENI CCTNNNNNAGG 1 cut(s) 1392
BstF5I GGATG 6 cut(s) 255, 604, 755, 789, 957, 1383
BstFNI CGCG 1 cut(s) 1290
BstHHI GCGC 1 cut(s) 1432
BstKTI GATC 6 cut(s) 271, 343, 541, 1072, 1221, 1464
BstMAI GTCTC 3 cut(s) 162, 574, 1001
BstMBI GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
BstMWI GCNNNNNNNGC 6 cut(s) 106, 141, 854, 863, 1448, 1514
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 2 cut(s) 745, 998
BstSFI CTRYAG 3 cut(s) 151, 345, 1556
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 1 cut(s) 1290
BstV2I GAAGAC 2 cut(s) 355, 969
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 7 cut(s) 135, 315, 391, 607, 848, 1128, 1451
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 6 cut(s) 255, 604, 755, 789, 957, 1383
BtsI GCAGTG 2 cut(s) 18, 1274
BtsIMutI CAGTG 5 cut(s) 18, 29, 1041, 1187, 1274
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 5 cut(s) 195, 393, 436, 728, 846
CfoI GCGC 1 cut(s) 1432
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 314, 1400
CseI GACGC 1 cut(s) 796
Csp6I GTAC 2 cut(s) 957, 1180
CviQI GTAC 2 cut(s) 957, 1180
DdeI CTNAG 3 cut(s) 32, 768, 1356
DpnI GATC 6 cut(s) 270, 342, 540, 1071, 1220, 1463
DpnII GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
DraI TTTAAA 2 cut(s) 688, 1344
EaeI YGGCCR 1 cut(s) 1449
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 1373
Eco31I GGTCTC 2 cut(s) 574, 1001
Eco47I GGWCC 1 cut(s) 1400
Eco57I CTGAAG 3 cut(s) 116, 981, 999
Eco88I CYCGRG 1 cut(s) 1229
EcoNI CCTNNNNNAGG 1 cut(s) 1392
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 1373
ErhI CCWWGG 1 cut(s) 323
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FbaI TGATCA 1 cut(s) 538
FokI GGATG 6 cut(s) 242, 611, 762, 796, 964, 1370
FriOI GRGCYC 1 cut(s) 1373
FspBI CTAG 2 cut(s) 18, 374
GlaI GCGC 1 cut(s) 1431
GsaI CCCAGC 2 cut(s) 568, 1187
GsuI CTGGAG 1 cut(s) 1272
HaeIII GGCC 7 cut(s) 135, 315, 391, 607, 848, 1128, 1451
HapII CCGG 3 cut(s) 385, 518, 999
HgaI GACGC 1 cut(s) 796
HhaI GCGC 1 cut(s) 1432
Hin6I GCGC 1 cut(s) 1430
HinP1I GCGC 1 cut(s) 1430
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 2 cut(s) 107, 724
HinfI GANTC 4 cut(s) 252, 471, 899, 1254
HpaII CCGG 3 cut(s) 385, 518, 999
HphI GGTGA 6 cut(s) 340, 518, 872, 1127, 1277, 1319
Hpy166II GTNNAC 5 cut(s) 331, 739, 796, 815, 890
Hpy188I TCNGA 3 cut(s) 543, 1059, 1394
Hpy188III TCNNGA 7 cut(s) 249, 266, 385, 642, 920, 1203, 1231
Hpy8I GTNNAC 5 cut(s) 331, 739, 796, 815, 890
HpyAV CCTTC 4 cut(s) 169, 618, 665, 1521
HpyCH4III ACNGT 5 cut(s) 277, 290, 1036, 1302, 1536
HpyCH4IV ACGT 2 cut(s) 485, 966
HpyF10VI GCNNNNNNNGC 6 cut(s) 106, 141, 854, 863, 1448, 1514
HpyF3I CTNAG 3 cut(s) 32, 768, 1356
HpySE526I ACGT 2 cut(s) 485, 966
HspAI GCGC 1 cut(s) 1430
Kpn2I TCCGGA 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
LmnI GCTCC 3 cut(s) 127, 236, 1513
LweI GCATC 3 cut(s) 254, 622, 1303
MaeI CTAG 2 cut(s) 18, 374
MaeII ACGT 2 cut(s) 485, 966
MaeIII GTNAC 2 cut(s) 513, 1147
MalI GATC 6 cut(s) 270, 342, 540, 1071, 1220, 1463
MboI GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
MboII GAAGA 9 cut(s) 115, 355, 455, 480, 605, 680, 943, 974, 1163
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 892, 1373
MlsI TGGCCA 1 cut(s) 1451
MluCI AATT 5 cut(s) 145, 619, 1235, 1407, 1445
MluNI TGGCCA 1 cut(s) 1451
MlyI GAGTC 1 cut(s) 1263
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 9 cut(s) 117, 233, 381, 747, 1078, 1329, 1388, 1413, 1432
Mox20I TGGCCA 1 cut(s) 1451
MroI TCCGGA 1 cut(s) 384
MroXI GAANNNNTTC 1 cut(s) 1170
MscI TGGCCA 1 cut(s) 1451
MseI TTAA 9 cut(s) 138, 549, 623, 687, 852, 1140, 1343, 1527, 1567
Msp20I TGGCCA 1 cut(s) 1451
MspA1I CMGCKG 1 cut(s) 1250
MspI CCGG 3 cut(s) 385, 518, 999
MspR9I CCNGG 2 cut(s) 747, 1000
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 1290
MwoI GCNNNNNNNGC 6 cut(s) 106, 141, 854, 863, 1448, 1514
NciI CCSGG 1 cut(s) 1000
NdeII GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
NlaIV GGNNCC 2 cut(s) 316, 342
PaqCI CACCTGC 1 cut(s) 848
PceI AGGCCT 1 cut(s) 135
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 632
PdmI GAANNNNTTC 1 cut(s) 1170
PfeI GAWTC 3 cut(s) 252, 471, 899
PflMI CCANNNNNTGG 1 cut(s) 1538
PfoI TCCNGGA 1 cut(s) 745
PleI GAGTC 1 cut(s) 1262
PpsI GAGTC 1 cut(s) 1262
PsiI TTATAA 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 745
PspFI CCCAGC 2 cut(s) 564, 1183
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 2 cut(s) 316, 342
PspPI GGNCC 2 cut(s) 314, 1400
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 1250
RsaI GTAC 2 cut(s) 958, 1181
RsaNI GTAC 2 cut(s) 957, 1180
SaqAI TTAA 9 cut(s) 138, 549, 623, 687, 852, 1140, 1343, 1527, 1567
Sau3AI GATC 6 cut(s) 268, 340, 538, 1069, 1218, 1461
Sau96I GGNCC 2 cut(s) 314, 1400
ScaI AGTACT 1 cut(s) 958
SchI GAGTC 1 cut(s) 1263
ScrFI CCNGG 2 cut(s) 747, 1000
SduI GDGCHC 2 cut(s) 892, 1373
SfaNI GCATC 3 cut(s) 254, 622, 1303
SfcI CTRYAG 3 cut(s) 151, 345, 1556
SinI GGWCC 1 cut(s) 1400
SmlI CTYRAG 2 cut(s) 226, 818
SmoI CTYRAG 2 cut(s) 226, 818
Sse9I AATT 5 cut(s) 145, 619, 1235, 1407, 1445
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 2 cut(s) 1288, 1398
SspI AATATT 1 cut(s) 684
SspMI CTAG 2 cut(s) 18, 374
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 745, 998
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 5 cut(s) 277, 290, 1036, 1302, 1536
TaiI ACGT 2 cut(s) 488, 969
TaqI TCGA 7 cut(s) 267, 643, 1072, 1174, 1204, 1257, 1405
TasI AATT 5 cut(s) 145, 619, 1235, 1407, 1445
TatI WGTACW 1 cut(s) 956
TfiI GAWTC 3 cut(s) 252, 471, 899
Tru1I TTAA 9 cut(s) 138, 549, 623, 687, 852, 1140, 1343, 1527, 1567
Tru9I TTAA 9 cut(s) 138, 549, 623, 687, 852, 1140, 1343, 1527, 1567
TscAI CASTG 5 cut(s) 18, 36, 1041, 1194, 1281
TspDTI ATGAA 8 cut(s) 188, 233, 244, 456, 573, 681, 788, 1372
TspRI CASTG 5 cut(s) 18, 36, 1041, 1194, 1281
Van91I CCANNNNNTGG 1 cut(s) 1538
VneI GTGCAC 1 cut(s) 888
VpaK11BI GGWCC 1 cut(s) 1400
XagI CCTNNNNNAGG 1 cut(s) 1392
XapI RAATTY 3 cut(s) 619, 1235, 1407
XmnI GAANNNNTTC 1 cut(s) 1170
XspI CTAG 2 cut(s) 18, 374
ZrmI AGTACT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.