Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025644.1

Orthogroup ID

OG0004771

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 822

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025644.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

tgatgtggaaggcctcaccaccatggggagaagactgctacctgctaaattgtgttgtgtgttgcagtcccttggcacggtcaaagagaacagctgaaattatatgggacactcgcaaagaggaaatgattatggattttgatttgagggaaatcgacttgtactcatttcaaggcctcttaaagcatgagggaaaagaaaagtttggtgcagcttttcagaaatggcaggtagatgcaccaaattttagcattgatgatcattatccagtgagagagttatgggcacgtgctaggagctgctggactagaatactattgcatgaaagcaggtctgttcttgtggttgctcataatgctgttaatcaggctctcgttgcaacagccattggactgggaacagagtatttcaggactttagttcagagcaattgtggtgtaagcgtactggacttcaccccacgtgctgagggtggaccaccacatagctgcctcaatcgtctaaaccaggtatacagcatctttactgaaaaaaagaaagaaagaagaaaaaatcactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

186

Amino Acids

21.48

Weight (kDa)

8.46

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620
fragaria_vesca	FvH4_3g24210
malus_domestica	MD11G1158000.v1.1
prunus_persica	Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1
pyrus_communis	pycom03g09120 pycom03g09130 pycom11g12830
rosa_chinensis	RchiOBHm_Chr5g0043311
rosa_laevigata	RLG00000034178
rosa_multiflora	Rmu_sc0000060.1_g000001 Rmu_sc0000060.1_g000024 Rmu_sc0017676.1_g000001 Rmu_sc0025644.1_g000001 Rmu_sc0042577.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037510 Rroxscaffold_7G00214910
rosa_rugosa	Rorug05G0205200
rosa_samantha	Rh5AG290700 Rh5AG290900 Rh5BG297300 Rh5CG327100 Rh5DG306900
rosa_wichuraiana	Rw5G026900 Rw5G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	50, 219, 320
AccI	GTMKAC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	243
AcvI	CACGTG	2 cut(s)	289, 463
AfaI	GTAC	2 cut(s)	163, 446
AfiI	CCNNNNNNNGG	2 cut(s)	25, 77
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	94, 214, 299, 488
AluI	AGCT	4 cut(s)	94, 214, 299, 488
AoxI	GGCC	2 cut(s)	11, 174
ApeKI	GCWGC	3 cut(s)	211, 299, 488
ApoI	RAATTY	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	8, 447
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	288
BbrPI	CACGTG	2 cut(s)	289, 463
BbsI	GAAGAC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	467
BbvI	GCAGC	3 cut(s)	223, 286, 475
BciT130I	CCWGG	1 cut(s)	508
BclI	TGATCA	1 cut(s)	258
BfaI	CTAG	2 cut(s)	293, 308
BfuAI	ACCTGC	3 cut(s)	50, 219, 320
BisI	GCNGC	3 cut(s)	212, 300, 489
BlsI	GCNGC	3 cut(s)	213, 301, 490
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	508
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	2 cut(s)	225, 527
BmuI	ACTGGG	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	467
BsaAI	YACGTR	2 cut(s)	289, 463
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	22, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 77
Bse1I	ACTGG	3 cut(s)	268, 398, 452
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	22, 71
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	25, 77
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	268, 398, 452
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	223, 286, 475
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	13, 176
BslFI	GGGAC	2 cut(s)	53, 121
BslI	CCNNNNNNNGG	2 cut(s)	25, 77
BsmFI	GGGAC	2 cut(s)	53, 121
BsnI	GGCC	2 cut(s)	13, 176
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	22
BspANI	GGCC	2 cut(s)	13, 176
BspCNI	CTCAG	1 cut(s)	459
BspMI	ACCTGC	3 cut(s)	50, 219, 320
BsrI	ACTGG	3 cut(s)	268, 398, 452
BssECI	CCNNGG	2 cut(s)	22, 71
BssMI	GATC	1 cut(s)	258
BssNAI	GTATAC	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	22, 71
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	80
BstBAI	YACGTR	2 cut(s)	289, 463
BstDEI	CTNAG	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 376
BstNI	CCWGG	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	223, 286, 475
BstV2I	GAAGAC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	13, 176
BtgI	CCRYGG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	275
BveI	ACCTGC	3 cut(s)	50, 219, 320
Cfr13I	GGNCC	1 cut(s)	475
CsiI	ACCWGGT	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	162, 445
CviAII	CATG	3 cut(s)	23, 187, 322
CviJI	RGCY	8 cut(s)	13, 94, 176, 214, 299, 370, 385, 488
CviKI_1	RGCY	8 cut(s)	13, 94, 176, 214, 299, 370, 385, 488
CviQI	GTAC	2 cut(s)	162, 445
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	22, 71
Eco147I	AGGCCT	2 cut(s)	13, 176
Eco47I	GGWCC	1 cut(s)	475
Eco72I	CACGTG	2 cut(s)	289, 463
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	2 cut(s)	22, 71
ErhI	CCWWGG	2 cut(s)	22, 71
FaeI	CATG	3 cut(s)	26, 190, 325
FaqI	GGGAC	2 cut(s)	53, 121
FatI	CATG	3 cut(s)	22, 186, 321
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	3 cut(s)	212, 300, 489
Fsp4HI	GCNGC	3 cut(s)	212, 300, 489
FspBI	CTAG	2 cut(s)	293, 308
GluI	GCNGC	3 cut(s)	212, 300, 489
HaeIII	GGCC	2 cut(s)	13, 176
Hin1II	CATG	3 cut(s)	26, 190, 325
HphI	GGTGA	2 cut(s)	8, 447
Hpy166II	GTNNAC	2 cut(s)	475, 513
Hpy188I	TCNGA	2 cut(s)	221, 425
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	475, 513
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	288, 462
HpyCH4V	TGCA	5 cut(s)	65, 211, 238, 321, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 376
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	2 cut(s)	288, 462
Hsp92II	CATG	3 cut(s)	26, 190, 325
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	3 cut(s)	223, 286, 475
LweI	GCATC	2 cut(s)	225, 527
MabI	ACCWGGT	1 cut(s)	506
MaeI	CTAG	2 cut(s)	293, 308
MaeII	ACGT	2 cut(s)	288, 462
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	43, 557
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	4 cut(s)	48, 98, 243, 429
MnlI	CCTC	7 cut(s)	24, 114, 140, 183, 187, 462, 502
MseI	TTAA	2 cut(s)	181, 362
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	508
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	2 cut(s)	355, 376
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	3 cut(s)	26, 190, 325
PceI	AGGCCT	2 cut(s)	13, 176
PkrI	GCNGC	3 cut(s)	213, 301, 490
PmaCI	CACGTG	2 cut(s)	289, 463
PmlI	CACGTG	2 cut(s)	289, 463
Ppu21I	YACGTR	2 cut(s)	289, 463
Psp6I	CCWGG	1 cut(s)	506
PspCI	CACGTG	2 cut(s)	289, 463
PspGI	CCWGG	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	163, 446
RsaNI	GTAC	2 cut(s)	162, 445
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	181, 362
SatI	GCNGC	3 cut(s)	212, 300, 489
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	288
SexAI	ACCWGGT	1 cut(s)	506
SfaNI	GCATC	2 cut(s)	225, 527
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	48, 98, 243, 429
SseBI	AGGCCT	2 cut(s)	13, 176
SspMI	CTAG	2 cut(s)	293, 308
StuI	AGGCCT	2 cut(s)	13, 176
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	2 cut(s)	22, 71
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	2 cut(s)	291, 465
TaqI	TCGA	1 cut(s)	155
TasI	AATT	4 cut(s)	48, 98, 243, 429
TatI	WGTACW	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	181, 362
Tru9I	TTAA	2 cut(s)	181, 362
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	3 cut(s)	211, 299, 488
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	2 cut(s)	293, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.