Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004771

Physical Location & Seq

Genomic Coordinates Reverse (-)

65543702 .. 65544250

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAATCTTTTCAACGAGAGGTATTTGATAAATGTTACGTTCGGTGAGGCACGGGCGAGCACGTGGAACGAGGAAGGTAGGATCCAAGGAAGCTCCAATTTCTCGGTGCTCACCAAGAAAGGCGAGGCTCGTGCCCGGACCTCCCGCCAAATGCTCATCGGAGATACCTTCAATGTTCGCTTCGCCGGTGATGTGGAAAGCCTCACCACCATGGGGAGAAGACTGCTCCCTGCTAAAATATGTTGTGTGTTGCAGTCCTTGGCACGGTCAAAGAGAACAGCTGAAATTATATGGGACGGTCGCAAAGAGGAAATGATTATAGATTTTGATTTGAGGGAAATCGACTTGTACTCATTTCAAGGCCTCTTAAAGCATGAGGGAAAAGAAAAGTTCGGTGCAGCTTTTACGAAATGGCAGGTAGATGCACCAAATTTTAGTATTGATGATCATTATCCAGTAAGGGAGTTATGGGCACGTGCTAGGAGCTGCTGGACAAAAATGCACCGCGATACAATTGATGATGGAGGCTTATATTTCAGGGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

182

Amino Acids

21.04

Weight (kDa)

8.81

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	86 - 170	8.4e-10	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620 AT5G22620
fragaria_vesca	FvH4_3g24210
malus_domestica	MD11G1158000.v1.1
prunus_persica	Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1 Prupe.6G119800_v2.0.a1
pyrus_communis	pycom03g09120 pycom03g09130 pycom11g12830
rosa_chinensis	RchiOBHm_Chr5g0043311
rosa_laevigata	RLG00000034178
rosa_multiflora	Rmu_sc0000060.1_g000001 Rmu_sc0000060.1_g000024 Rmu_sc0017676.1_g000001 Rmu_sc0025644.1_g000001 Rmu_sc0042577.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037510 Rroxscaffold_7G00214910
rosa_rugosa	Rorug05G0205200
rosa_samantha	Rh5AG290700 Rh5AG290900 Rh5BG297300 Rh5CG327100 Rh5DG306900
rosa_wichuraiana	Rw5G026900 Rw5G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AccII	CGCG	1 cut(s)	507
AciI	CCGC	2 cut(s)	145, 505
AclWI	GGATC	2 cut(s)	76, 89
AcsI	RAATTY	1 cut(s)	430
AcvI	CACGTG	2 cut(s)	63, 476
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	213, 264
AgsI	TTSAA	3 cut(s)	13, 172, 359
AluBI	AGCT	4 cut(s)	93, 281, 401, 486
AluI	AGCT	4 cut(s)	93, 281, 401, 486
Alw21I	GWGCWC	2 cut(s)	62, 111
AlwI	GGATC	2 cut(s)	76, 89
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	398, 486
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	4 cut(s)	56, 103, 196, 200
AvaII	GGWCC	1 cut(s)	138
BaeGI	GKGCMC	3 cut(s)	136, 475, 544
BamHI	GGATCC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	129
BbrPI	CACGTG	2 cut(s)	63, 476
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	62, 111
BbvI	GCAGC	2 cut(s)	410, 473
BccI	CCATC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	136
BfaI	CTAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	399, 487
BlsI	GCNGC	2 cut(s)	400, 488
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	136
BsaAI	YACGTR	2 cut(s)	63, 476
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	85, 210, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 264
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	85, 210, 258
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	213, 264
BseNI	ACTGG	1 cut(s)	455
BseSI	GKGCMC	3 cut(s)	136, 475, 544
BseXI	GCAGC	2 cut(s)	410, 473
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	62, 111
BsiSI	CCGG	2 cut(s)	136, 186
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	213, 264
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	5 cut(s)	62, 111, 136, 475, 544
Bsp143I	GATC	2 cut(s)	81, 445
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	145, 505
BspANI	GGCC	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	76, 89
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	3 cut(s)	85, 210, 258
BssMI	GATC	2 cut(s)	81, 445
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	3 cut(s)	85, 210, 258
Bst2BI	CACGAG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	267, 299
BstBAI	YACGTR	2 cut(s)	63, 476
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	2 cut(s)	84, 448
BstMBI	GATC	2 cut(s)	81, 445
BstMCI	CGRYCG	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	134
BstSLI	GKGCMC	3 cut(s)	136, 475, 544
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	410, 473
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	211, 374
CviJI	RGCY	8 cut(s)	93, 128, 201, 281, 363, 401, 486, 528
CviKI_1	RGCY	8 cut(s)	93, 128, 201, 281, 363, 401, 486, 528
CviQI	GTAC	1 cut(s)	349
DpnI	GATC	2 cut(s)	83, 447
DpnII	GATC	2 cut(s)	81, 445
Eco130I	CCWWGG	3 cut(s)	85, 210, 258
Eco147I	AGGCCT	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	138
Eco72I	CACGTG	2 cut(s)	63, 476
EcoT14I	CCWWGG	3 cut(s)	85, 210, 258
ErhI	CCWWGG	3 cut(s)	85, 210, 258
FaeI	CATG	2 cut(s)	214, 377
FaiI	YATR	9 cut(s)	212, 241, 290, 292, 320, 375, 469, 532, 547
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	210, 373
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	399, 487
Fsp4HI	GCNGC	2 cut(s)	399, 487
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	2 cut(s)	399, 487
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	2 cut(s)	136, 186
Hin1II	CATG	2 cut(s)	214, 377
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	136, 186
HphI	GGTGA	4 cut(s)	56, 103, 196, 200
Hpy188I	TCNGA	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	68, 178
HpyCH4III	ACNGT	2 cut(s)	267, 299
HpyCH4IV	ACGT	3 cut(s)	38, 62, 475
HpyCH4V	TGCA	4 cut(s)	253, 398, 425, 502
HpySE526I	ACGT	3 cut(s)	38, 62, 475
Hsp92II	CATG	2 cut(s)	214, 377
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	81, 445
LmnI	GCTCC	3 cut(s)	98, 231, 483
LpnPI	CCDG	7 cut(s)	149, 199, 243, 401, 468, 475, 523
Lsp1109I	GCAGC	2 cut(s)	410, 473
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	3 cut(s)	38, 62, 475
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	83, 447
MboI	GATC	2 cut(s)	81, 445
MboII	GAAGA	1 cut(s)	231
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	5 cut(s)	62, 111, 136, 475, 544
MluCI	AATT	4 cut(s)	97, 285, 430, 513
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	136, 186
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	507
NciI	CCSGG	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	81, 445
NlaIII	CATG	2 cut(s)	214, 377
NlaIV	GGNNCC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	400, 488
PmaCI	CACGTG	2 cut(s)	63, 476
PmlI	CACGTG	2 cut(s)	63, 476
Ppu21I	YACGTR	2 cut(s)	63, 476
PspCI	CACGTG	2 cut(s)	63, 476
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	2 cut(s)	399, 487
Sau3AI	GATC	2 cut(s)	81, 445
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	5 cut(s)	62, 111, 136, 475, 544
SfaNI	GCATC	1 cut(s)	412
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	97, 285, 430, 513
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	2 cut(s)	145, 505
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	3 cut(s)	85, 210, 258
TaaI	ACNGT	2 cut(s)	267, 299
TaiI	ACGT	3 cut(s)	41, 65, 478
TaqI	TCGA	1 cut(s)	342
TasI	AATT	4 cut(s)	97, 285, 430, 513
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	2 cut(s)	398, 486
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.