Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010796

Physical Location & Seq

Genomic Coordinates Reverse (-)

9261167 .. 9262137

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAATGCCAGTCAGAAGATGACTGTTCCCAGCTTGTGAGGCTTCTACCGCCGACTGAAGTTTCTCTACTGGATTGGGCCATCAACCTTATGGCTGATGTTGTCCAACAGGAACATCTAAACAAGATGAATGCACGCAATATAGCCTTGGTTTTTGCACCAAACATGACTCAGATGGCAGATCCATTGACTGCATTGATGTATGCAGTCCAAGTGATGAACTTCCTGATAACACTTATTTTGAAGACACTGCGCGAAAGGAAGGATTCTGTTGTAGAGCCTCCCTTGTGCCATGTAGAACCCTCTGATGAGGATGGACACCAGAGCCCTTCACAATCCTTAAAGGAAGGTATTGGCAAACTTAATGAAGGGAAAGAACAGTCGGTGTTCACTAAAGAACCTCGATCTGGAACCTCCTCCAACTCTAATCAAGTCAGTGACCTAACCAATAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD RhoGAP

Protein Analysis

153

Amino Acids

16.89

Weight (kDa)

4.87

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08340 AT5G22400
malus_domestica	MD03G1147700.v1.1 MD11G1166500.v1.1
prunus_persica	Prupe.6G132400_v2.0.a1
pyrus_communis	pycom03g10190 pycom11g13790
rosa_chinensis	RchiOBHm_Chr5g0045671 RchiOBHm_Chr5g0046331
rosa_laevigata	RLG00000034370
rosa_multiflora	Rmu_sc0001035.1_g000081 Rmu_sc0039882.1_g000001
rosa_roxburghii	Rroxscaffold_1G00035550
rosa_rugosa	Rorug05G0224100
rosa_samantha	Rh5AG305100 Rh5BG313800 Rh5CG340100 Rh5DG324500
rosa_wichuraiana	Rw0G020560 Rw0G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BbsI	GAAGAC	1 cut(s)	251
BccI	CCATC	3 cut(s)	89, 169, 308
BfaI	CTAG	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	10, 75
Bse3DI	GCAATG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	10, 75
BseRI	GAGGAG	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	181, 404
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	10, 75
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	181, 404
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	26, 381
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	184, 407
BstMBI	GATC	2 cut(s)	181, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 49
BstUI	CGCG	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	248, 442
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	78
CviAII	CATG	2 cut(s)	166, 293
CviJI	RGCY	8 cut(s)	34, 43, 80, 95, 146, 280, 327, 456
CviKI_1	RGCY	8 cut(s)	34, 43, 80, 95, 146, 280, 327, 456
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	183, 406
DpnII	GATC	2 cut(s)	181, 404
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	169, 296
FaiI	YATR	5 cut(s)	92, 143, 167, 204, 294
FatI	CATG	2 cut(s)	165, 292
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	1 cut(s)	254
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	169, 296
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	169, 266
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	3 cut(s)	16, 174, 307
Hpy188III	TCNNGA	2 cut(s)	226, 408
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	4 cut(s)	256, 339, 341, 362
HpyCH4III	ACNGT	2 cut(s)	26, 381
HpyCH4V	TGCA	5 cut(s)	4, 134, 158, 194, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 49
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	169, 296
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	181, 404
LpnPI	CCDG	7 cut(s)	23, 44, 56, 95, 239, 335, 393
MaeI	CTAG	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	183, 406
MboI	GATC	2 cut(s)	181, 404
MboII	GAAGA	2 cut(s)	29, 256
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	2 cut(s)	130, 444
MnlI	CCTC	8 cut(s)	33, 291, 304, 313, 411, 424, 427, 446
MseI	TTAA	2 cut(s)	341, 363
Mva1269I	GAATGC	1 cut(s)	136
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	40, 49
NdeII	GATC	2 cut(s)	181, 404
NlaIII	CATG	2 cut(s)	169, 296
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	341, 363
Sau3AI	GATC	2 cut(s)	181, 404
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	6 cut(s)	36, 90, 352, 403, 416, 444
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	26, 381
TaqI	TCGA	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	341, 363
Tru9I	TTAA	2 cut(s)	341, 363
TscAI	CASTG	2 cut(s)	255, 442
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	3 cut(s)	143, 233, 381
TspRI	CASTG	2 cut(s)	255, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.