Rmu_sc0039882.1_g000001

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039882.1
OG0010796
Physical Location & Seq
Reverse (-)
2 .. 1145
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039882.1_g000001.1.cds

Sequence Viewer

Length: 632 bp
atgcaccgtattattcttcattctggtggacatgctaggactttaggacctttccttgacttgaatgctcatcttcatttcttgttcatggttgcttggtttagggaactcccagttgggcttctggattctctagcccctgagcaggtaatgcagtgccagacagaagacgactgcttagagcttgtgaggcttctaccctctaccgaagttgctctattggattgggcggccaaccttatggctgatgttgttgaacacgaacatctaaacaagatgaatgcgcgcaacattgccatggtttttgcaccgaacatgactcagatggcagatcctttgactgcactgatgtatgctgttcaagtgatgaacttcctcaagattcttattctgaagacactgcgagaaaggaaagaaaatgtggtagaggccagtgtcttttgtgtagaacctgctgatgagaatggacaccagagctgttcgcaatcatgccatgaagatgttgtcgaagagagcctggttgagaacccaattcctaatggcagggactgctgtggtacttctgatcaagttgacactttgggtaatgaaatggaagctgtaaacaccatgacaactgaagttcaagggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

210

Amino Acids

23.44

Weight (kDa)

4.61

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 136, 460
AccII CGCG 1 cut(s) 286
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 4 cut(s) 64, 257, 362, 626
AjnI CCWGG 1 cut(s) 516
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 184, 477, 599
AluI AGCT 3 cut(s) 184, 477, 599
AlwI GGATC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 549
AoxI GGCC 2 cut(s) 231, 429
AspLEI GCGC 2 cut(s) 286, 288
AspS9I GGNCC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 174, 401
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 518
BclI TGATCA 1 cut(s) 565
BfaI CTAG 2 cut(s) 36, 134
BfuAI ACCTGC 2 cut(s) 136, 460
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 518
BmrI ACTGGG 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 174, 401
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 113, 432
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 132, 335
BseNI ACTGG 2 cut(s) 113, 432
BsePI GCGCGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 233, 431
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 560
BsmI GAATGC 2 cut(s) 70, 286
BsnI GGCC 2 cut(s) 233, 431
Bsp143I GATC 2 cut(s) 331, 565
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 233, 431
BspCNI CTCAG 2 cut(s) 133, 334
BspFNI CGCG 1 cut(s) 286
BspMI ACCTGC 2 cut(s) 136, 460
BspPI GGATC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 2 cut(s) 113, 432
BssECI CCNNGG 1 cut(s) 297
BssHII GCGCGC 1 cut(s) 284
BssMI GATC 2 cut(s) 331, 565
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 504
BstAPI GCANNNNNTGC 2 cut(s) 151, 549
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 141, 178, 321
BstDSI CCRYGG 1 cut(s) 297
BstFNI CGCG 1 cut(s) 286
BstHHI GCGC 2 cut(s) 286, 288
BstKTI GATC 2 cut(s) 334, 568
BstMBI GATC 2 cut(s) 331, 565
BstMWI GCNNNNNNNGC 3 cut(s) 151, 190, 549
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 516
BstUI CGCG 1 cut(s) 286
BstV2I GAAGAC 2 cut(s) 174, 401
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 2 cut(s) 233, 431
BtgI CCRYGG 1 cut(s) 297
BtsI GCAGTG 2 cut(s) 161, 398
BtsIMutI CAGTG 4 cut(s) 161, 344, 398, 439
BveI ACCTGC 2 cut(s) 136, 460
Cac8I GCNNGC 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 549
CfoI GCGC 2 cut(s) 286, 288
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 558
CviAII CATG 7 cut(s) 32, 88, 298, 316, 489, 494, 610
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 3 cut(s) 141, 178, 321
DpnI GATC 2 cut(s) 333, 567
DpnII GATC 2 cut(s) 331, 565
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 7 cut(s) 35, 91, 301, 319, 492, 497, 613
FaiI YATR 9 cut(s) 33, 89, 242, 299, 317, 354, 490, 495, 611
FaqI GGGAC 1 cut(s) 560
FatI CATG 7 cut(s) 31, 87, 297, 315, 488, 493, 609
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 36, 134
GlaI GCGC 2 cut(s) 285, 287
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 233, 431
HhaI GCGC 2 cut(s) 286, 288
Hin1II CATG 7 cut(s) 35, 91, 301, 319, 492, 497, 613
Hin6I GCGC 2 cut(s) 284, 286
HinP1I GCGC 2 cut(s) 284, 286
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 3 cut(s) 128, 319, 382
Hpy166II GTNNAC 3 cut(s) 29, 574, 604
Hpy188I TCNGA 3 cut(s) 324, 393, 565
Hpy188III TCNNGA 2 cut(s) 125, 379
Hpy8I GTNNAC 3 cut(s) 29, 574, 604
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 4, 154, 308, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 190, 549
HpyF3I CTNAG 3 cut(s) 141, 178, 321
Hsp92II CATG 7 cut(s) 35, 91, 301, 319, 492, 497, 613
HspAI GCGC 2 cut(s) 284, 286
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 2 cut(s) 331, 565
MaeI CTAG 2 cut(s) 36, 134
MalI GATC 2 cut(s) 333, 567
MboI GATC 2 cut(s) 331, 565
MboII GAAGA 6 cut(s) 8, 65, 179, 406, 509, 521
MflI RGATCY 1 cut(s) 331
MluCI AATT 1 cut(s) 531
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 4 cut(s) 183, 211, 386, 421
MslI CAYNNNNRTG 3 cut(s) 24, 296, 498
MspR9I CCNGG 1 cut(s) 518
Mva1269I GAATGC 2 cut(s) 70, 286
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 151, 190, 549
NcoI CCATGG 1 cut(s) 297
NdeII GATC 2 cut(s) 331, 565
NlaIII CATG 7 cut(s) 35, 91, 301, 319, 492, 497, 613
NspI RCATGY 1 cut(s) 35
PauI GCGCGC 1 cut(s) 284
PctI GAATGC 2 cut(s) 70, 286
PfeI GAWTC 2 cut(s) 128, 382
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 549
PsuI RGATCY 1 cut(s) 331
PteI GCGCGC 1 cut(s) 284
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 3 cut(s) 24, 296, 498
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 331, 565
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 518
SetI ASST 7 cut(s) 52, 150, 186, 240, 454, 479, 601
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 3 cut(s) 24, 296, 498
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 1 cut(s) 531
SsiI CCGC 1 cut(s) 230
SspMI CTAG 2 cut(s) 36, 134
StyD4I CCNGG 1 cut(s) 516
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 507
TasI AATT 1 cut(s) 531
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 2 cut(s) 128, 382
TscAI CASTG 4 cut(s) 161, 351, 405, 439
TspDTI ATGAA 7 cut(s) 8, 65, 76, 293, 383, 510, 603
TspRI CASTG 4 cut(s) 161, 351, 405, 439
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 1 cut(s) 35
XspI CTAG 2 cut(s) 36, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.