Rh5BG313800

rho GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010796
Physical Location & Seq
Reverse (-)
41563318 .. 41568018
4701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG313800.1

Sequence Viewer

Length: 942 bp
ATGACAGAGCTCGTCCTCCATTCTCATCCTGACCATTTCTCTACATCTCCAACACCCACCACCTCTTCTTCTTCTTCTTCTTCTCCACCACCCTCCTTAACCTCCGCACCGCCGTCTTCTTTAACCTGCGCACCCCCGAGGGATGAGTCTTGGGTGACGGACTGTGACGCCCGGCAGCAGCTGTCCCTGTTGGCATTGCTGGTCACGTTTTTCAGGAAGTCTTTGAGTCCTTGCAAGAGGGAAAGGAGGGAGCTTTGCGCCATGGAGATCGGCTGGCCTACCAATGTGCGCCACGTGGCACATGTCACCTTTGACAGGTTCAATGGCTTCTTGGGTTTGCCTGTTGAGTTTGAGCCTGAACTTCCCAGTAGGCCTCCGAGTGCAAGTCGAACTGTTTTTGGAGTATCTACCAAATCCATGCAATTGTCTTATGACTCTAGAGGGAATAGTGTGCCGACAATTCTCTTGCTTATGCAAGGGCGGTTGTATGCTGAAGGAGGTCTACAGGTAGAAGGGATATTCAGAATTAATGGAGAAAACAGTCAAGAGGAGCATATAAGAGGCCAGTTAAACAGGGGAGATGTACCTGAAGGCATTGACATACACTGCTTGGCAGGGCTGATCAAGGCTTGGTTTAGGGAACTCCCAGTTGGGCTTCTGGATTCTCTAGCCCCTGAGCAGGTAATGCAGTGCCAGACAGAAGACGACTGCTTAGAGCTTGTGAGGCTTCTACCCTCTACCGAAGTTGCTCTATTGGATTGGGCGGTCAACCTTATGGCTGATGTTGTCAAACACGAACATCTAAACAAGATGAATGCGCGCAATATTGCCATGGTTTTTGCACCGAACATGACTCAGGTGTGTTTGTTTAGTCCTGTTTCTGTTTTCTCTTTCTTTATCTGTACTGCATTTGACATACTCCTATTAGTAGCAGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD RhoGAP

Protein Analysis

313

Amino Acids

34.56

Weight (kDa)

5.37

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 166 - 286 1.6e-23 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 130
Acc36I ACCTGC 2 cut(s) 134, 670
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 820
AciI CCGC 4 cut(s) 105, 110, 481, 764
AcuI CTGAAG 2 cut(s) 513, 609
AcvI CACGTG 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 2 cut(s) 585, 904
AfiI CCNNNNNNNGG 2 cut(s) 315, 679
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 4 cut(s) 10, 181, 253, 718
AluI AGCT 4 cut(s) 10, 181, 253, 718
Alw21I GWGCWC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 275, 371, 562
ApeKI GCWGC 2 cut(s) 175, 178
AseI ATTAAT 1 cut(s) 528
AspLEI GCGC 5 cut(s) 131, 260, 291, 820, 822
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 166, 298
AvaI CYCGRG 1 cut(s) 136
BanII GRGCYC 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BbrPI CACGTG 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 108, 708
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 187, 190
BceAI ACGGC 1 cut(s) 97
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 172
BfaI CTAG 2 cut(s) 438, 668
BfmI CTRYAG 1 cut(s) 503
BfuAI ACCTGC 2 cut(s) 134, 670
BisI GCNGC 2 cut(s) 176, 179
BlsI GCNGC 2 cut(s) 177, 180
Bme1390I CCNGG 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 2 cut(s) 360, 641
BmuI ACTGGG 2 cut(s) 360, 641
BpiI GAAGAC 2 cut(s) 108, 708
Bpu10I CCTNAGC 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 295
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 137, 261, 831
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 679
Bse1I ACTGG 3 cut(s) 366, 565, 647
Bse3DI GCAATG 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 137, 261, 831
BseGI GGATG 2 cut(s) 25, 148
BseLI CCNNNNNNNGG 2 cut(s) 315, 679
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 666, 869
BseNI ACTGG 3 cut(s) 366, 565, 647
BsePI GCGCGC 1 cut(s) 818
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 187, 190
Bsh1236I CGCG 1 cut(s) 820
BshFI GGCC 3 cut(s) 277, 373, 564
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 315, 679
BsmFI GGGAC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 3 cut(s) 277, 373, 564
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 267, 621
Bsp19I CCATGG 2 cut(s) 261, 831
BspACI CCGC 4 cut(s) 105, 110, 481, 764
BspANI GGCC 3 cut(s) 277, 373, 564
BspCNI CTCAG 2 cut(s) 667, 868
BspFNI CGCG 1 cut(s) 820
BspMI ACCTGC 2 cut(s) 134, 670
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 3 cut(s) 366, 565, 647
BssECI CCNNGG 3 cut(s) 137, 261, 831
BssHII GCGCGC 1 cut(s) 818
BssMI GATC 2 cut(s) 267, 621
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 261, 831
Bst4CI ACNGT 3 cut(s) 164, 394, 542
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 685
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 3 cut(s) 275, 820, 934
BstDEI CTNAG 3 cut(s) 675, 712, 855
BstDSI CCRYGG 2 cut(s) 261, 831
BstENI CCTNNNNNAGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 25, 148
BstFNI CGCG 1 cut(s) 820
BstHHI GCGC 5 cut(s) 131, 260, 291, 820, 822
BstKTI GATC 2 cut(s) 270, 624
BstMBI GATC 2 cut(s) 267, 621
BstMWI GCNNNNNNNGC 2 cut(s) 685, 724
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 503
BstUI CGCG 1 cut(s) 820
BstV1I GCAGC 2 cut(s) 187, 190
BstV2I GAAGAC 2 cut(s) 108, 708
BsuRI GGCC 3 cut(s) 277, 373, 564
BtgI CCRYGG 2 cut(s) 261, 831
BtsCI GGATG 2 cut(s) 25, 148
BtsI GCAGTG 2 cut(s) 604, 695
BtsIMutI CAGTG 2 cut(s) 604, 695
BveI ACCTGC 2 cut(s) 134, 670
Cac8I GCNNGC 3 cut(s) 275, 820, 934
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 5 cut(s) 131, 260, 291, 820, 822
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 584, 903
CviAII CATG 5 cut(s) 262, 302, 418, 832, 850
CviQI GTAC 2 cut(s) 584, 903
DdeI CTNAG 3 cut(s) 675, 712, 855
DpnI GATC 2 cut(s) 269, 623
DpnII GATC 2 cut(s) 267, 621
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 261, 831
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 513, 609
Eco72I CACGTG 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 261, 831
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 261, 831
FaeI CATG 5 cut(s) 265, 305, 421, 835, 853
FaqI GGGAC 1 cut(s) 169
FatI CATG 5 cut(s) 261, 301, 417, 831, 849
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 176, 179
FokI GGATG 2 cut(s) 12, 155
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 2 cut(s) 176, 179
FspBI CTAG 2 cut(s) 438, 668
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 5 cut(s) 130, 259, 290, 819, 821
GluI GCNGC 2 cut(s) 176, 179
HaeIII GGCC 3 cut(s) 277, 373, 564
HapII CCGG 1 cut(s) 172
HgaI GACGC 1 cut(s) 176
HhaI GCGC 5 cut(s) 131, 260, 291, 820, 822
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 5 cut(s) 265, 305, 421, 835, 853
Hin6I GCGC 5 cut(s) 129, 258, 289, 818, 820
HinP1I GCGC 5 cut(s) 129, 258, 289, 818, 820
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 5 cut(s) 146, 226, 434, 662, 853
HpaII CCGG 1 cut(s) 172
HphI GGTGA 2 cut(s) 166, 298
Hpy166II GTNNAC 2 cut(s) 503, 769
Hpy188I TCNGA 2 cut(s) 378, 524
Hpy188III TCNNGA 5 cut(s) 29, 214, 438, 545, 659
Hpy8I GTNNAC 2 cut(s) 503, 769
HpyAV CCTTC 3 cut(s) 488, 506, 584
HpyCH4III ACNGT 3 cut(s) 164, 394, 542
HpyCH4IV ACGT 2 cut(s) 206, 294
HpyCH4V TGCA 7 cut(s) 234, 383, 421, 475, 688, 842, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 685, 724
HpyF3I CTNAG 3 cut(s) 675, 712, 855
HpySE526I ACGT 2 cut(s) 206, 294
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 5 cut(s) 265, 305, 421, 835, 853
HspAI GCGC 5 cut(s) 129, 258, 289, 818, 820
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 2 cut(s) 267, 621
LmnI GCTCC 2 cut(s) 250, 550
Lsp1109I GCAGC 2 cut(s) 187, 190
MaeI CTAG 2 cut(s) 438, 668
MaeII ACGT 2 cut(s) 206, 294
MaeIII GTNAC 4 cut(s) 154, 164, 202, 304
MalI GATC 2 cut(s) 269, 623
MboI GATC 2 cut(s) 267, 621
MboII GAAGA 8 cut(s) 57, 60, 63, 66, 69, 72, 108, 713
MfeI CAATTG 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 422, 459, 525
MlyI GAGTC 4 cut(s) 155, 235, 428, 847
MmeI TCCRAC 1 cut(s) 74
MseI TTAA 4 cut(s) 98, 122, 528, 569
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 820
MvnI CGCG 1 cut(s) 820
MwoI GCNNNNNNNGC 2 cut(s) 685, 724
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 2 cut(s) 261, 831
NdeII GATC 2 cut(s) 267, 621
NlaIII CATG 5 cut(s) 265, 305, 421, 835, 853
NmuCI GTSAC 4 cut(s) 154, 164, 202, 304
NsbI TGCGCA 1 cut(s) 130
NspI RCATGY 1 cut(s) 305
PauI GCGCGC 1 cut(s) 818
PceI AGGCCT 1 cut(s) 373
PciI ACATGT 1 cut(s) 301
PctI GAATGC 1 cut(s) 820
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 2 cut(s) 177, 180
PleI GAGTC 4 cut(s) 154, 234, 428, 847
PmaCI CACGTG 1 cut(s) 295
PmlI CACGTG 1 cut(s) 295
PpsI GAGTC 4 cut(s) 154, 234, 428, 847
Ppu21I YACGTR 1 cut(s) 295
PscI ACATGT 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 12
PspCI CACGTG 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 181
PteI GCGCGC 1 cut(s) 818
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 2 cut(s) 585, 904
RsaNI GTAC 2 cut(s) 584, 903
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 98, 122, 528, 569
SatI GCNGC 2 cut(s) 176, 179
Sau3AI GATC 2 cut(s) 267, 621
SchI GAGTC 4 cut(s) 155, 235, 428, 847
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 12
SfcI CTRYAG 1 cut(s) 503
Sse9I AATT 3 cut(s) 422, 459, 525
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 4 cut(s) 105, 110, 481, 764
SspI AATATT 1 cut(s) 826
SspMI CTAG 2 cut(s) 438, 668
SstI GAGCTC 1 cut(s) 12
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 2 cut(s) 261, 831
TaaI ACNGT 3 cut(s) 164, 394, 542
TaiI ACGT 2 cut(s) 209, 297
TaqI TCGA 1 cut(s) 388
TasI AATT 3 cut(s) 422, 459, 525
TatI WGTACW 1 cut(s) 902
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 4 cut(s) 98, 122, 528, 569
Tru9I TTAA 4 cut(s) 98, 122, 528, 569
TscAI CASTG 2 cut(s) 611, 695
TseFI GTSAC 4 cut(s) 154, 164, 202, 304
TseI GCWGC 2 cut(s) 175, 178
Tsp45I GTSAC 4 cut(s) 154, 164, 202, 304
TspDTI ATGAA 1 cut(s) 827
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 2 cut(s) 611, 695
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 2 cut(s) 438, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.