pycom03g13230

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011351
Physical Location & Seq
Reverse (-)
14170387 .. 14173599
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGTTCTACAGAGGGCATATTAATGTAGTTCTTAAATTTGCTGATGGTGGCGATGGCCGCGAAATGGGTTCAAAGCGTCAGCGGCTAAGTGAGCCAGGATCTTCATTCTATGGGACCTCCCCCGGCTCAAGTTATATGTACAATCCAACTCCTTATGCATATGTTGGACAACCTCCGCCTTTCCCTGTTGTCAAGCTTCGTGGTCTACCATTTGATTGCACAGAAGTTGATGTTGCTGAGTTCTTCCATGGTCTTGACATTGTTGATGTTCTTTTTGTCCACAAGAATGGCAAGTTCACTGGGGAAGCTTTTTGTGTTTTGGGGTATCCTCTGCAGGTTGATTTTGCCCTACAAAAGAATAGGCAGAACATGGGCAGGAGATATGTTGAAGTGTTCAGAAGTAAGAGGCAGGAATATTACAAGGCAATAGCCCAAGAAGTATCTGATTCTCGTGGTGGTTCCCCTCGCAGAAATGCCCCAAGGGCCAAATCTTATGATGAAGGGAAGGACTCAGCGGAGCATACCGGGGTATTGCGGTTGAGGGGATTGCCATTTTCAGCTGGGAAGGATGACATAATGGATTTCTTTAAGGACTATGTGTTGTCAGAATCCTCAATTCATTTCACAATGAATTCAGAAGGGAGGCCGACCGGGGAAGGTTTTGTGGAGTTTGCAAGTGCAGAAGACTCCAAGGCAGCGATGGCCAAGGATAGGATGACGCTTGGAAGTCGATACATAGAGTTGTTCGCCTCCACGCATGATGAGTTGGATGAAGCAATATCCAGAGGACGGTGA

Protein Analysis

265

Amino Acids

29.6

Weight (kDa)

6.61

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 179 - 246 6.4e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20890
fragaria_vesca FvH4_3g28820 FvH4_3g28820
malus_domestica MD03G1174800.v1.1 MD11G1192900.v1.1
prunus_persica Prupe.4G249700_v2.0.a1
pyrus_communis pycom03g13230 pycom11g16840
rosa_chinensis RchiOBHm_Chr5g0052191
rosa_laevigata RLG00000034838
rosa_multiflora Rmu_sc0006157.1_g000008 Rmu_ssc0000098.1_g000023
rosa_roxburghii Rroxscaffold_1G00028000
rosa_rugosa Rorug05G0274300 Rorug05G0274400
rosa_samantha Rh5AG346800 Rh5BG357400 Rh5CG383000 Rh5DG372900
rosa_wichuraiana Rw5G032760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 205
AccII CGCG 1 cut(s) 60
AciI CCGC 5 cut(s) 58, 82, 176, 515, 535
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 55, 702
AcsI RAATTY 2 cut(s) 35, 631
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 64, 711, 789
AgsI TTSAA 2 cut(s) 72, 389
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 3 cut(s) 196, 308, 560
AluI AGCT 3 cut(s) 196, 308, 560
AlwI GGATC 1 cut(s) 106
AoxI GGCC 4 cut(s) 55, 483, 644, 702
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 2 cut(s) 35, 631
AseI ATTAAT 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 114, 483
AsuC2I CCSGG 3 cut(s) 123, 526, 652
AvaII GGWCC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 704
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 707
BccI CCATC 3 cut(s) 38, 47, 694
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 1 cut(s) 336
BcnI CCSGG 3 cut(s) 123, 526, 652
BfmI CTRYAG 2 cut(s) 7, 332
BfuAI ACCTGC 1 cut(s) 325
BfuI GTATCC 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 482
BisI GCNGC 3 cut(s) 58, 83, 696
BlsI GCNGC 3 cut(s) 59, 84, 697
Bme1390I CCNGG 4 cut(s) 96, 123, 526, 652
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 114, 483
BmiI GGNNCC 2 cut(s) 115, 460
BmrFI CCNGG 4 cut(s) 96, 123, 526, 652
BmrI ACTGGG 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 3 cut(s) 123, 526, 652
BsaJI CCNNGG 7 cut(s) 121, 247, 479, 525, 651, 690, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 711, 789
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 7 cut(s) 121, 247, 479, 525, 651, 690, 705
BseGI GGATG 3 cut(s) 574, 720, 775
BseLI CCNNNNNNNGG 3 cut(s) 64, 711, 789
BseMII CTCAG 2 cut(s) 228, 525
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 707
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 651
BshFI GGCC 4 cut(s) 57, 485, 646, 704
BsiEI CGRYCG 1 cut(s) 651
BsiSI CCGG 3 cut(s) 123, 525, 651
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 64, 711, 789
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 4 cut(s) 57, 485, 646, 704
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 1 cut(s) 98
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 5 cut(s) 58, 82, 176, 515, 535
BspANI GGCC 4 cut(s) 57, 485, 646, 704
BspCNI CTCAG 2 cut(s) 229, 524
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 115, 460
BspMAI CTGCAG 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 1 cut(s) 106
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 7 cut(s) 121, 247, 479, 525, 651, 690, 705
BssMI GATC 1 cut(s) 98
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 4 cut(s) 247, 479, 690, 705
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 792
BstAUI TGTACA 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 86, 237, 511
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 574, 720, 775
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMCI CGRYCG 1 cut(s) 651
BstMWI GCNNNNNNNGC 5 cut(s) 57, 82, 91, 482, 701
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 4 cut(s) 94, 121, 524, 650
BstSFI CTRYAG 2 cut(s) 7, 332
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 707
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 98
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 4 cut(s) 57, 485, 646, 704
BtgI CCRYGG 1 cut(s) 247
BtgZI GCGATG 2 cut(s) 66, 713
BtsCI GGATG 3 cut(s) 574, 720, 775
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 114, 483
CseI GACGC 2 cut(s) 65, 727
Csp6I GTAC 1 cut(s) 139
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 248, 370, 758
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 3 cut(s) 86, 237, 511
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EaeI YGGCCR 2 cut(s) 55, 702
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 4 cut(s) 247, 479, 690, 705
Eco47I GGWCC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 4 cut(s) 247, 479, 690, 705
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 4 cut(s) 247, 479, 690, 705
FaeI CATG 3 cut(s) 251, 373, 761
FaqI GGGAC 1 cut(s) 127
FatI CATG 3 cut(s) 247, 369, 757
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 58, 83, 696
FokI GGATG 3 cut(s) 581, 727, 782
Fsp4HI GCNGC 3 cut(s) 58, 83, 696
GluI GCNGC 3 cut(s) 58, 83, 696
GsaI CCCAGC 1 cut(s) 564
HaeIII GGCC 4 cut(s) 57, 485, 646, 704
HapII CCGG 3 cut(s) 123, 525, 651
HgaI GACGC 2 cut(s) 65, 727
Hin1II CATG 3 cut(s) 251, 373, 761
HindIII AAGCTT 2 cut(s) 194, 306
HinfI GANTC 4 cut(s) 446, 509, 608, 686
HpaII CCGG 3 cut(s) 123, 525, 651
Hpy166II GTNNAC 3 cut(s) 206, 280, 297
Hpy188I TCNGA 4 cut(s) 398, 445, 607, 637
Hpy188III TCNNGA 2 cut(s) 254, 783
Hpy8I GTNNAC 3 cut(s) 206, 280, 297
HpyAV CCTTC 5 cut(s) 494, 499, 559, 632, 650
HpyCH4III ACNGT 1 cut(s) 792
HpyCH4V TGCA 5 cut(s) 158, 219, 334, 674, 680
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 82, 91, 482, 701
HpyF3I CTNAG 3 cut(s) 86, 237, 511
Hsp92II CATG 3 cut(s) 251, 373, 761
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 707
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 3 cut(s) 93, 235, 695
MflI RGATCY 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 3 cut(s) 35, 615, 631
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 2 cut(s) 503, 680
MmeI TCCRAC 3 cut(s) 145, 170, 747
Mox20I TGGCCA 1 cut(s) 704
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 1 cut(s) 704
MseI TTAA 3 cut(s) 21, 33, 588
MslI CAYNNNNRTG 2 cut(s) 21, 285
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 3 cut(s) 82, 515, 560
MspI CCGG 3 cut(s) 123, 525, 651
MspR9I CCNGG 4 cut(s) 96, 123, 526, 652
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 5 cut(s) 57, 82, 91, 482, 701
NciI CCSGG 3 cut(s) 123, 526, 652
NcoI CCATGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 98
NlaIII CATG 3 cut(s) 251, 373, 761
NlaIV GGNNCC 2 cut(s) 115, 460
NsiI ATGCAT 1 cut(s) 160
PfeI GAWTC 2 cut(s) 446, 608
PkrI GCNGC 3 cut(s) 59, 84, 697
PleI GAGTC 2 cut(s) 503, 680
PpsI GAGTC 2 cut(s) 503, 680
PpuMI RGGWCCY 1 cut(s) 114
PshBI ATTAAT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 115, 460
PspPI GGNCC 2 cut(s) 114, 483
PspPPI RGGWCCY 1 cut(s) 114
PstI CTGCAG 1 cut(s) 336
PsuI RGATCY 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 2 cut(s) 21, 285
SaqAI TTAA 3 cut(s) 21, 33, 588
SatI GCNGC 3 cut(s) 58, 83, 696
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 114, 483
SchI GAGTC 2 cut(s) 503, 680
ScrFI CCNGG 4 cut(s) 96, 123, 526, 652
SetI ASST 7 cut(s) 119, 175, 198, 310, 339, 562, 661
SfcI CTRYAG 2 cut(s) 7, 332
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 2 cut(s) 21, 285
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 3 cut(s) 35, 615, 631
SsiI CCGC 5 cut(s) 58, 82, 176, 515, 535
SspI AATATT 1 cut(s) 416
StyD4I CCNGG 4 cut(s) 94, 121, 524, 650
StyI CCWWGG 4 cut(s) 247, 479, 690, 705
TaaI ACNGT 1 cut(s) 792
TaqI TCGA 1 cut(s) 730
TasI AATT 3 cut(s) 35, 615, 631
TatI WGTACW 1 cut(s) 138
TauI GCSGC 2 cut(s) 60, 85
TfiI GAWTC 2 cut(s) 446, 608
Tru1I TTAA 3 cut(s) 21, 33, 588
Tru9I TTAA 3 cut(s) 21, 33, 588
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 695
TspDTI ATGAA 5 cut(s) 93, 513, 608, 644, 786
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 114
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 2 cut(s) 35, 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.