pycom03g15240

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012358
Physical Location & Seq
Reverse (-)
16547967 .. 16550288
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
ATGATATCGGATAAGGGCGGGGAGGGGCCAGCGCCTGCGGCTACAATATTATACGTATCATATCATCGTTTCCTTCTTTCTCCTCTTAAAAATATGGCTACCGCTCCTTTAACTTCTCCAATACCTTCCTCTCTCGCCTCCTCCAAATGCCAACCGCCGCCACTTCTCTCGCCTTCTCCTCCGAATTCACTTCCATTACTTCCCAGTCAAAAACGAAGGGAGTTGCTGCTGAAAGCAGGGCTTGGTCTGCTTCCTCTGGCTCTGGTTGAAACAATACTGAAAGTGCCTTCCGCAGAAGCTAAGGATGCGGTGGTGGGCTCCTATCTCCCGCCCTCACCTTCCGATTCTTCCTTCGTCGTCTTCAAAGCCACTCCTAAAGACACTCCCGCCCTTCGCGCTGGAAATGTGGAGCCCTACCAGTTCATCATTCCCCCAACCTGGAAACAGATGCGCGTAGCAAACATTTTATCTGGTAATTACTGCCAACCAAAATGCGCAGAGCCGTGGGTGGAGGTAAAATTTGAAGACGAAAAACAGGGAAAACTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAACCGAACGCAACAATTGAAGACATTGGAAACCCTGAGAAGGTAATTGCTTCTCTTGGCCCTTTCGTCACTGGAAACACATACGATCCAGATGAGCTCCTTGAGACTACAGTTGAGAAGCGTGGTGATTTGACGTACTACAAGTACGCGCTCGAGACCCCGTTTGCTCTCACAGGTTCTCACAATCTTGCAGTGGCAACAGCAAAGGGAAACACTGTTGTATTATTTGTGGTAAGTGCAAGTGAGAAACAATGGCAAGCATCTCAGAAGACGCTAAAAGCCATGCTCGATTCATTTCAAGTGTAG

Protein Analysis

296

Amino Acids

31.84

Weight (kDa)

8.6

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 137 - 295 1.8e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 3 cut(s) 396, 453, 731
AciI CCGC 9 cut(s) 18, 38, 102, 155, 158, 291, 308, 329, 387
AclWI GGATC 1 cut(s) 662
AcsI RAATTY 2 cut(s) 184, 518
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 2 cut(s) 719, 728
AfiI CCNNNNNNNGG 2 cut(s) 438, 622
AgsI TTSAA 5 cut(s) 269, 364, 524, 602, 881
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 2 cut(s) 299, 679
AluI AGCT 2 cut(s) 299, 679
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 2 cut(s) 680, 731
AlwI GGATC 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 2 cut(s) 26, 640
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 2 cut(s) 184, 518
AspLEI GCGC 5 cut(s) 34, 398, 453, 497, 733
AspS9I GGNCC 2 cut(s) 26, 641
AsuHPI GGTGA 3 cut(s) 327, 552, 719
AvaI CYCGRG 1 cut(s) 734
BanII GRGCYC 3 cut(s) 320, 414, 681
BbsI GAAGAC 4 cut(s) 352, 531, 609, 857
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 680, 731
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 3 cut(s) 39, 158, 227
BlsI GCNGC 3 cut(s) 40, 159, 228
Bme1390I CCNGG 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 2 cut(s) 26, 641
BmiI GGNNCC 3 cut(s) 27, 319, 411
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 3 cut(s) 295, 438, 851
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 4 cut(s) 352, 531, 609, 857
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 622
Bse1I ACTGG 3 cut(s) 204, 418, 658
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 438, 622
BseMII CTCAG 2 cut(s) 609, 860
BseNI ACTGG 3 cut(s) 204, 418, 658
BseRI GAGGAG 3 cut(s) 72, 130, 168
BseXI GCAGC 1 cut(s) 213
Bsh1236I CGCG 3 cut(s) 396, 453, 731
BshFI GGCC 2 cut(s) 28, 642
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 734
BslI CCNNNNNNNGG 2 cut(s) 438, 622
BsmAI GTCTC 2 cut(s) 680, 731
BsnI GGCC 2 cut(s) 28, 642
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 3 cut(s) 320, 414, 681
Bsp143I GATC 1 cut(s) 667
BspACI CCGC 9 cut(s) 18, 38, 102, 155, 158, 291, 308, 329, 387
BspANI GGCC 2 cut(s) 28, 642
BspCNI CTCAG 2 cut(s) 610, 859
BspFNI CGCG 3 cut(s) 396, 453, 731
BspLI GGNNCC 3 cut(s) 27, 319, 411
BspPI GGATC 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 104
BsrI ACTGG 3 cut(s) 204, 418, 658
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 1 cut(s) 667
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 694, 799
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 30, 36, 840
BstDEI CTNAG 3 cut(s) 300, 618, 846
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 3 cut(s) 396, 453, 731
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 5 cut(s) 34, 398, 453, 497, 733
BstKTI GATC 1 cut(s) 670
BstMAI GTCTC 2 cut(s) 680, 731
BstMBI GATC 1 cut(s) 667
BstMWI GCNNNNNNNGC 4 cut(s) 38, 247, 305, 395
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 690
BstSNI TACGTA 1 cut(s) 55
BstUI CGCG 3 cut(s) 396, 453, 731
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 4 cut(s) 352, 531, 609, 857
BsuRI GGCC 2 cut(s) 28, 642
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 3 cut(s) 651, 780, 795
Cac8I GCNNGC 3 cut(s) 30, 36, 840
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 5 cut(s) 34, 398, 453, 497, 733
Cfr13I GGNCC 2 cut(s) 26, 641
CseI GACGC 1 cut(s) 862
Csp6I GTAC 2 cut(s) 718, 727
CviAII CATG 1 cut(s) 865
CviQI GTAC 2 cut(s) 718, 727
DdeI CTNAG 3 cut(s) 300, 618, 846
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
Ecl136II GAGCTC 1 cut(s) 679
Eco105I TACGTA 1 cut(s) 55
Eco24I GRGCYC 3 cut(s) 320, 414, 681
Eco31I GGTCTC 1 cut(s) 731
Eco32I GATATC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 437
EcoRV GATATC 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 320, 414, 681
FaeI CATG 1 cut(s) 868
FaiI YATR 5 cut(s) 52, 61, 95, 664, 866
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 1 cut(s) 864
FauI CCCGC 3 cut(s) 11, 336, 394
Fnu4HI GCNGC 3 cut(s) 39, 158, 227
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 3 cut(s) 320, 414, 681
Fsp4HI GCNGC 3 cut(s) 39, 158, 227
FspI TGCGCA 1 cut(s) 496
GlaI GCGC 5 cut(s) 33, 397, 452, 496, 732
GluI GCNGC 3 cut(s) 39, 158, 227
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 2 cut(s) 28, 642
HgaI GACGC 1 cut(s) 862
HhaI GCGC 5 cut(s) 34, 398, 453, 497, 733
Hin1II CATG 1 cut(s) 868
Hin6I GCGC 5 cut(s) 32, 396, 451, 495, 731
HinP1I GCGC 5 cut(s) 32, 396, 451, 495, 731
HinfI GANTC 2 cut(s) 344, 872
HphI GGTGA 3 cut(s) 327, 552, 719
Hpy188I TCNGA 4 cut(s) 10, 183, 343, 849
Hpy188III TCNNGA 2 cut(s) 671, 736
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 9 cut(s) 83, 135, 183, 210, 297, 348, 361, 401, 616
HpyCH4III ACNGT 2 cut(s) 694, 799
HpyCH4IV ACGT 2 cut(s) 54, 716
HpyCH4V TGCA 2 cut(s) 773, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 247, 305, 395
HpyF3I CTNAG 3 cut(s) 300, 618, 846
HpySE526I ACGT 2 cut(s) 54, 716
Hsp92II CATG 1 cut(s) 868
HspAI GCGC 5 cut(s) 32, 396, 451, 495, 731
Kzo9I GATC 1 cut(s) 667
LmnI GCTCC 4 cut(s) 109, 323, 409, 684
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 3 cut(s) 295, 438, 851
MaeII ACGT 2 cut(s) 54, 716
MaeIII GTNAC 1 cut(s) 649
MalI GATC 1 cut(s) 669
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 667
MboII GAAGA 5 cut(s) 339, 352, 536, 614, 862
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 3 cut(s) 320, 414, 681
MluCI AATT 5 cut(s) 184, 475, 518, 597, 627
MnlI CCTC 9 cut(s) 16, 93, 139, 148, 151, 189, 264, 343, 505
MseI TTAA 2 cut(s) 87, 110
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 3 cut(s) 396, 453, 731
MwoI GCNNNNNNNGC 4 cut(s) 38, 247, 305, 395
NdeII GATC 1 cut(s) 667
NlaIII CATG 1 cut(s) 868
NlaIV GGNNCC 3 cut(s) 27, 319, 411
NmuCI GTSAC 1 cut(s) 649
NsbI TGCGCA 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 734
PfeI GAWTC 2 cut(s) 344, 872
PkrI GCNGC 3 cut(s) 40, 159, 228
Ppu21I YACGTR 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 27, 319, 411
PspPI GGNCC 2 cut(s) 26, 641
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 719, 728
RsaNI GTAC 2 cut(s) 718, 727
SacI GAGCTC 1 cut(s) 681
SaqAI TTAA 2 cut(s) 87, 110
SatI GCNGC 3 cut(s) 39, 158, 227
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 2 cut(s) 26, 641
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 3 cut(s) 320, 414, 681
SfaNI GCATC 3 cut(s) 295, 438, 851
SfcI CTRYAG 1 cut(s) 690
Sfr274I CTCGAG 1 cut(s) 734
SlaI CTCGAG 1 cut(s) 734
SmlI CTYRAG 2 cut(s) 683, 734
SmoI CTYRAG 2 cut(s) 683, 734
SnaBI TACGTA 1 cut(s) 55
Sse9I AATT 5 cut(s) 184, 475, 518, 597, 627
SsiI CCGC 9 cut(s) 18, 38, 102, 155, 158, 291, 308, 329, 387
SspI AATATT 1 cut(s) 48
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 2 cut(s) 694, 799
TaiI ACGT 2 cut(s) 57, 719
TaqI TCGA 2 cut(s) 735, 870
TasI AATT 5 cut(s) 184, 475, 518, 597, 627
TauI GCSGC 2 cut(s) 41, 160
TfiI GAWTC 2 cut(s) 344, 872
Tru1I TTAA 2 cut(s) 87, 110
Tru9I TTAA 2 cut(s) 87, 110
TscAI CASTG 3 cut(s) 658, 780, 802
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 2 cut(s) 412, 864
TspRI CASTG 3 cut(s) 658, 780, 802
XapI RAATTY 2 cut(s) 184, 518
XhoI CTCGAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.