pycom03g17100

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012834
Physical Location & Seq
Forward (+)
18224214 .. 18228021
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1140 bp
ATGGCCGCCATACACTCCATAGCTGCTCAGAGCTTCCCCTCTCTCCCAAACGCCAAACCCAGAAAACCCATTGCCGCTCACGTAAAACCCATCTTGACCTCCGGTTTTCCCACCTCCAAACTCCCAAAAAACCCAACTTTCACGATAAACAAACAGAAAAGCAGGTGGGTTTTGAATTCGGTGGTCGACCGAGAAGAGTGCGATGTGATTCCGGTTCAGAGCTCCGACCGTACGGACCAGCAGGAAGGGGTGGTGGCGAGCAGGGTGGAGAGCGAAGGCGGGGATCAGGGGGAGTTGGTGAGTCAGGTGGGCGGGTTCGGAGCGAGTGAGGGGAGGCTTTCGTTTGAAGGGGCTGGAGGGTTTGGGTCTTCTGGGGTTGGAAGTGAGAGGGAGAGTGAGAAATTTGAGAGGCTGGTGGATAGGACTATCAATGCCGCTATTGTGCTTGCAGCTGGTTCTTTTGCTCTCACTAAGTTGATCACCGTCGACCAGGATTACTGGCATGGCTGGACTCTATATGAGATCCTCAGATATGCACCTCAACACAACTGGAGTGCTTATGAGGACGCTCTCAAGACTAACCCAGTTTTAGCCAAAATGGTGATTAGTGGTGTGGTGTACTCTGTAGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTCTATTTGAGTTTGACCGTACACGAATGCTCAGGTCAGGTCTTGTTGGATTTACTCTCCATGGTTCCCTCTCTCACTACTATTACCAGTTTTGCGAGGAGCTTATTCCCTTCCAAGACTGGTGGGTGGTTCCTGCCAAAGTAGCCTTCGACCAAACTGTATGGGCAGCAATTTGGAACAGCATTTACTTTACAGTAGTGGGATTTTTGCGTTTTGAATCTCCCATCAGTATTTTTAGTGAACTGACAGCGACATTTTGGCCAATGCTAACAGCAGGGTGGAAGCTTTGGCCATTTGCGCATCTTGTTACCTATGGTGTGATCCCTGTTGAACAACGGCTCTTATGGGTGGACTGTGTAGAGTTAGTCTGGGTGACTATACTCTCAACTTACTCAAATGAAAAATCAGAAGCAAGGATTTCTGAGGCACCAGCTGAAGATATTTCCAGTTCGTCGAACACAAGTCCTCTTGAGGAGTAA

Protein Analysis

380

Amino Acids

42.24

Weight (kDa)

5.16

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 289 - 349 1.9e-16 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
Acc16I TGCGCA 1 cut(s) 960
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 1087
AccBSI CCGCTC 1 cut(s) 77
AccI GTMKAC 2 cut(s) 186, 486
AciI CCGC 5 cut(s) 6, 75, 279, 312, 435
AclWI GGATC 3 cut(s) 291, 517, 976
AcoI YGGCCR 3 cut(s) 3, 920, 950
AcsI RAATTY 2 cut(s) 175, 401
AcuI CTGAAG 1 cut(s) 1116
AfaI GTAC 3 cut(s) 232, 620, 682
AgsI TTSAA 5 cut(s) 175, 347, 653, 878, 992
AjnI CCWGG 1 cut(s) 489
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 7 cut(s) 23, 33, 222, 452, 763, 946, 1094
AluI AGCT 7 cut(s) 23, 33, 222, 452, 763, 946, 1094
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 3 cut(s) 291, 517, 976
AoxI GGCC 3 cut(s) 3, 920, 950
ApeKI GCWGC 3 cut(s) 23, 449, 827
ApoI RAATTY 2 cut(s) 175, 401
AspLEI GCGC 1 cut(s) 961
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 4 cut(s) 310, 472, 613, 1045
AvaII GGWCC 1 cut(s) 235
BalI TGGCCA 2 cut(s) 922, 952
BanI GGYRCC 1 cut(s) 1087
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 10, 461, 839
BccI CCATC 2 cut(s) 98, 893
BceAI ACGGC 1 cut(s) 1013
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 1 cut(s) 491
BclI TGATCA 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 624
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 6 cut(s) 6, 24, 75, 435, 450, 828
BlsI GCNGC 6 cut(s) 7, 25, 76, 436, 451, 829
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 3 cut(s) 727, 792, 1089
BmrFI CCNGG 1 cut(s) 491
BmrI ACTGGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 970
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 2 cut(s) 375, 571
Bpu10I CCTNAGC 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 721
BsaWI WCCGGW 2 cut(s) 101, 211
Bse1I ACTGG 7 cut(s) 503, 554, 584, 638, 748, 785, 1107
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 1 cut(s) 721
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 4 cut(s) 41, 541, 706, 1074
BseNI ACTGG 7 cut(s) 503, 554, 584, 638, 748, 785, 1107
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 3 cut(s) 10, 461, 839
Bsh1285I CGRYCG 2 cut(s) 190, 229
BshFI GGCC 3 cut(s) 5, 922, 952
BshNI GGYRCC 1 cut(s) 1087
BsiEI CGRYCG 2 cut(s) 190, 229
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 102, 212
BsiWI CGTACG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 3 cut(s) 5, 922, 952
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 283, 477, 522, 981
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 5 cut(s) 6, 75, 279, 312, 435
BspANI GGCC 3 cut(s) 5, 922, 952
BspCNI CTCAG 4 cut(s) 40, 540, 705, 1075
BspLI GGNNCC 3 cut(s) 727, 792, 1089
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 291, 517, 976
BspT107I GGYRCC 1 cut(s) 1087
BsrBI CCGCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 7 cut(s) 503, 554, 584, 638, 748, 785, 1107
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 4 cut(s) 283, 477, 522, 981
BssT1I CCWWGG 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 7 cut(s) 230, 484, 645, 680, 820, 856, 1016
Bst6I CTCTTC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 259, 447
BstDEI CTNAG 5 cut(s) 27, 471, 527, 692, 1083
BstDSI CCRYGG 1 cut(s) 721
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 4 cut(s) 286, 480, 525, 984
BstMBI GATC 4 cut(s) 283, 477, 522, 981
BstMCI CGRYCG 2 cut(s) 190, 229
BstMWI GCNNNNNNNGC 2 cut(s) 803, 958
BstNI CCWGG 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 3 cut(s) 10, 461, 839
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuRI GGCC 3 cut(s) 5, 922, 952
BtgI CCRYGG 1 cut(s) 721
BtgZI GCGATG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 650
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 259, 447
CfoI GCGC 1 cut(s) 961
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 575
Csp6I GTAC 3 cut(s) 231, 619, 681
CspCI CAANNNNNGTGG 2 cut(s) 764, 799
CviAII CATG 2 cut(s) 503, 722
CviQI GTAC 3 cut(s) 231, 619, 681
DdeI CTNAG 5 cut(s) 27, 471, 527, 692, 1083
DpnI GATC 4 cut(s) 285, 479, 524, 983
DpnII GATC 4 cut(s) 283, 477, 522, 981
EaeI YGGCCR 3 cut(s) 3, 920, 950
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 1116
EcoICRI GAGCTC 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 2 cut(s) 506, 725
FaqI GGGAC 1 cut(s) 644
FatI CATG 2 cut(s) 502, 721
FauI CCCGC 2 cut(s) 272, 305
FbaI TGATCA 1 cut(s) 477
FblI GTMKAC 2 cut(s) 186, 486
Fnu4HI GCNGC 6 cut(s) 6, 24, 75, 435, 450, 828
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 6 cut(s) 6, 24, 75, 435, 450, 828
FspI TGCGCA 1 cut(s) 960
GlaI GCGC 1 cut(s) 960
GluI GCNGC 6 cut(s) 6, 24, 75, 435, 450, 828
GsuI CTGGAG 2 cut(s) 375, 571
HaeIII GGCC 3 cut(s) 5, 922, 952
HapII CCGG 2 cut(s) 102, 212
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 961
Hin1II CATG 2 cut(s) 506, 725
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HincII GTYRAC 2 cut(s) 187, 487
HindII GTYRAC 2 cut(s) 187, 487
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 4 cut(s) 208, 301, 511, 878
HpaII CCGG 2 cut(s) 102, 212
HphI GGTGA 4 cut(s) 310, 472, 613, 1045
Hpy166II GTNNAC 6 cut(s) 187, 487, 619, 683, 902, 1012
Hpy188I TCNGA 7 cut(s) 30, 219, 226, 320, 530, 1069, 1084
Hpy188III TCNNGA 4 cut(s) 94, 142, 574, 1130
Hpy8I GTNNAC 6 cut(s) 187, 487, 619, 683, 902, 1012
Hpy99I CGWCG 2 cut(s) 488, 1117
HpyAV CCTTC 6 cut(s) 239, 269, 341, 647, 781, 817
HpyCH4III ACNGT 7 cut(s) 230, 484, 645, 680, 820, 856, 1016
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 449, 536, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 958
HpyF3I CTNAG 5 cut(s) 27, 471, 527, 692, 1083
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 506, 725
HspAI GCGC 1 cut(s) 959
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 4 cut(s) 283, 477, 522, 981
LmnI GCTCC 3 cut(s) 227, 320, 760
Lsp1109I GCAGC 3 cut(s) 10, 461, 839
LweI GCATC 1 cut(s) 970
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 967, 1033
MalI GATC 4 cut(s) 285, 479, 524, 983
MbiI CCGCTC 1 cut(s) 77
MboI GATC 4 cut(s) 283, 477, 522, 981
MboII GAAGA 3 cut(s) 206, 360, 1109
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 1 cut(s) 224
MlsI TGGCCA 2 cut(s) 922, 952
MluCI AATT 3 cut(s) 175, 401, 831
MluNI TGGCCA 2 cut(s) 922, 952
MlyI GAGTC 2 cut(s) 310, 505
MmeI TCCRAC 3 cut(s) 249, 358, 688
Mox20I TGGCCA 2 cut(s) 922, 952
MscI TGGCCA 2 cut(s) 922, 952
Msp20I TGGCCA 2 cut(s) 922, 952
MspA1I CMGCKG 2 cut(s) 452, 1094
MspI CCGG 2 cut(s) 102, 212
MspR9I CCNGG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 2 cut(s) 803, 958
NcoI CCATGG 1 cut(s) 721
NdeII GATC 4 cut(s) 283, 477, 522, 981
NlaIII CATG 2 cut(s) 506, 725
NlaIV GGNNCC 3 cut(s) 727, 792, 1089
NmuCI GTSAC 1 cut(s) 1033
NsbI TGCGCA 1 cut(s) 960
PaqCI CACCTGC 1 cut(s) 153
PctI GAATGC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 208, 878
Pfl23II CGTACG 1 cut(s) 230
PkrI GCNGC 6 cut(s) 7, 25, 76, 436, 451, 829
PleI GAGTC 2 cut(s) 309, 505
PpsI GAGTC 2 cut(s) 309, 505
Ppu21I YACGTR 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspLI CGTACG 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 727, 792, 1089
PspPI GGNCC 1 cut(s) 235
PsrI GAACNNNNNNTAC 2 cut(s) 830, 862
PsuI RGATCY 1 cut(s) 522
PvuII CAGCTG 2 cut(s) 452, 1094
RsaI GTAC 3 cut(s) 232, 620, 682
RsaNI GTAC 3 cut(s) 231, 619, 681
SacI GAGCTC 1 cut(s) 224
SalI GTCGAC 2 cut(s) 185, 485
SatI GCNGC 6 cut(s) 6, 24, 75, 435, 450, 828
Sau3AI GATC 4 cut(s) 283, 477, 522, 981
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 310, 505
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 1 cut(s) 970
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 235
SmlI CTYRAG 2 cut(s) 572, 1130
SmoI CTYRAG 2 cut(s) 572, 1130
Sse9I AATT 3 cut(s) 175, 401, 831
SsiI CCGC 5 cut(s) 6, 75, 279, 312, 435
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 7 cut(s) 230, 484, 645, 680, 820, 856, 1016
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 186, 486, 810, 1115
TaqII GACCGA 1 cut(s) 204
TasI AATT 3 cut(s) 175, 401, 831
TatI WGTACW 1 cut(s) 618
TauI GCSGC 3 cut(s) 8, 77, 437
TfiI GAWTC 2 cut(s) 208, 878
TscAI CASTG 1 cut(s) 650
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 3 cut(s) 23, 449, 827
Tsp45I GTSAC 1 cut(s) 1033
TspDTI ATGAA 1 cut(s) 1074
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 2 cut(s) 175, 401
XmiI GTMKAC 2 cut(s) 186, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.