pycom03g21590

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013426
Physical Location & Seq
Reverse (-)
21870957 .. 21872796
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1515 bp
ATGTCGATTCCCATTTTCTTCTTCTACGGTACTCCAACCCCTCTCTCTCTCTTGCAATTTTCTGGTAATTCCCAATCCCTCTGCTTTCCCAATTTTTCCTCCATGAATTTCTTCAAATCCGTATTCTCCGACGACCCAGATCCCCCATACCCCGAATCCGAATCCGAATCCCCAACGACTCAACCCAATCCCAACCCTACCGGCAACAGCGGCGGATGGAATTTCGGCGATCTGATCAAAACCCTAGCGACCAAATCCGAGTCGGTGATTGAGACCTACCGCCGCGACCTGCAGGAATTCGGGTCGGGTCTAAAGAAAGAGATCGAGGTGGCTCAGGGGTCGTTGGGGGCGGTGGGGCACGTCATCGATGAGTTCGGGAACACAGTGCTGAAAGGGACGGCCGAGATCATCGCTCAGGGCAAGGACGCGATCCTTGCCGACGACGAATCGGATTCCTCGGATGCCAAAGATCAAAGCTTTAGTTCTCAGCAGGGCTTGAATTCGAAACGGTACAGTAGGTTTGACGCTCAGGTGCGTGCGATTCAGGGTGACCCTAGCACTTACTGCGAGGAGCCTGAGGATTTGGATGATTACGAAAAATGGAAATCTGGGTTTGATCTAGAGGAGAAAGGTGACGAAATCGAGAGGCTTTTCAAAGAAAACGGAGCTATGGAGGGGATTTACAAAAGGGTTGTTTTGAATAGCGTTGATCACGAAAGCTTTTGGTGTAGTTACTTTTATAGGGTTTATAAGCTGAGGCAGGCTGAGGAAGTGAGAGTGAATCTCGTTAAGCGGGCAATTTCGGTCGAGGAGGATGAGGAGTTAAGTTGGGATGTTGATGATGATGAGTCTGATGACAATGTGAGCAATGTGGTGTCGAAAGAGAATTCGGGGAAAAGTACTGAAGTGGCTGCTGAAGGTTCTGGTAAAGATGGGAGAGTTGAGAACTTGAGGGTTGGGAATGAGGTTGGAGAGAAGAGTTCCAATAATGTGGGAGAGGGGAGCAGTGCTAGTGAAGAGACTAATGTGGTGTCGAAGAAGGGCGATTTAGCAGCGAATAGCGAATTGGTCAGCAAAGATTCTGAGCAAAAGATTGTTATGGAAGAGAGCAGCCATGTTGGGGAATCTCAAGTTGTTGATCAGAAGAAGGGTAGTGCTGTGGAGTTGAGTGGCGAAAAGGAGTCCAAAAAGAAAATGCAGGTAGAAGGGGATTCCGGGAAGAAAGATTTACCATTGAAATTGGAGGAGAAAGCGGCAGTGGAAGGGAAGAAGAATGGGGCTGCTGAATCCGGTAAAGGCATTGAAACGCCGGAGGCAGGAGACCTTGGGTGGGATGAGATTGAGGATCTTAGCAGCATTGATGATAAAAAAGTTAGCCATGGTGGTGGAAGCGGAAGTCCTACTGATAAAGCCGAGCTCCGAAAGCGGCTCAGTACTGCAGCTGAAGAAGAAGAAGAAGATTTAAGCTGGGATATTGAGGAGGATGATGATGATGATGTACCAGCTAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

505

Amino Acids

55.12

Weight (kDa)

4.39

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 201 - 257 4.9e-13 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013426)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03350
fragaria_vesca FvH4_2g24111
malus_domestica MD03G1271200.v1.1
prunus_persica Prupe.8G247300_v2.0.a1
pyrus_communis pycom03g21590 pycom11g25850
rosa_chinensis RchiOBHm_Chr6g0291911
rosa_laevigata RLG00000012079
rosa_multiflora Rmu_co8044656.1_g000001 Rmu_sc0016851.1_g000001 Rmu_sc0030145.1_g000001
rosa_roxburghii Rroxscaffold_7G00175630
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335300 Rh6BG342700 Rh6CG348900 Rh6DG335600
rosa_wichuraiana Rw6G029180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
Acc36I ACCTGC 2 cut(s) 297, 1189
AccII CGCG 2 cut(s) 285, 428
AciI CCGC 9 cut(s) 210, 213, 280, 283, 350, 793, 1253, 1392, 1426
AclWI GGATC 3 cut(s) 134, 424, 1353
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 5 cut(s) 106, 220, 296, 499, 886
AcuI CTGAAG 3 cut(s) 924, 936, 1464
AfaI GTAC 5 cut(s) 31, 512, 901, 1435, 1500
AfiI CCNNNNNNNGG 3 cut(s) 1120, 1316, 1330
AgsI TTSAA 6 cut(s) 115, 499, 655, 700, 1237, 1304
AjiI CACGTC 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 1049, 1081
AluBI AGCT 8 cut(s) 477, 668, 720, 754, 1417, 1442, 1467, 1505
AluI AGCT 8 cut(s) 477, 668, 720, 754, 1417, 1442, 1467, 1505
Alw21I GWGCWC 1 cut(s) 1419
Alw26I GTCTC 3 cut(s) 266, 1013, 1314
AlwI GGATC 3 cut(s) 134, 424, 1353
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 6 cut(s) 911, 1052, 1110, 1280, 1353, 1439
ApoI RAATTY 5 cut(s) 106, 220, 296, 499, 886
Asp700I GAANNNNTTC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 1216
AsuHPI GGTGA 3 cut(s) 277, 560, 644
AsuII TTCGAA 1 cut(s) 503
AxyI CCTNAGG 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 1419
Bbv12I GWGCWC 1 cut(s) 1419
BbvCI CCTCAGC 2 cut(s) 755, 765
BbvI GCAGC 6 cut(s) 898, 1064, 1122, 1267, 1365, 1451
BccI CCATC 2 cut(s) 210, 926
BceAI ACGGC 1 cut(s) 414
BclI TGATCA 3 cut(s) 234, 709, 1138
BcnI CCSGG 1 cut(s) 1216
BcoDI GTCTC 3 cut(s) 266, 1013, 1314
BfaI CTAG 4 cut(s) 245, 555, 620, 1011
BfmI CTRYAG 2 cut(s) 290, 1437
BfuAI ACCTGC 2 cut(s) 297, 1189
BmcAI AGTACT 2 cut(s) 901, 1435
Bme1390I CCNGG 1 cut(s) 1216
BmgBI CACGTC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 573
BmrFI CCNGG 1 cut(s) 1216
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 768, 800
Bpu10I CCTNAGC 5 cut(s) 333, 414, 528, 755, 765
Bpu14I TTCGAA 1 cut(s) 503
BpuEI CTTGAG 2 cut(s) 970, 1113
BpuMI CCSGG 1 cut(s) 1216
Bsa29I ATCGAT 1 cut(s) 366
BsaI GGTCTC 2 cut(s) 266, 1314
BsaJI CCNNGG 3 cut(s) 456, 1324, 1378
BsaWI WCCGGW 1 cut(s) 1289
Bsc4I CCNNNNNNNGG 3 cut(s) 1120, 1316, 1330
Bse118I RCCGGY 1 cut(s) 200
Bse21I CCTNAGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 874
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 456, 1324, 1378
BseGI GGATG 7 cut(s) 221, 466, 592, 820, 838, 1339, 1489
BseLI CCNNNNNNNGG 3 cut(s) 1120, 1316, 1330
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 9 cut(s) 347, 428, 500, 542, 567, 746, 756, 1074, 1444
BseRI GAGGAG 6 cut(s) 584, 638, 824, 833, 1259, 1493
BseSI GKGCMC 1 cut(s) 360
BseX3I CGGCCG 1 cut(s) 399
BseXI GCAGC 6 cut(s) 898, 1064, 1122, 1267, 1365, 1451
BseYI CCCAGC 1 cut(s) 1467
Bsh1236I CGCG 2 cut(s) 285, 428
Bsh1285I CGRYCG 2 cut(s) 402, 807
BshFI GGCC 1 cut(s) 401
BshVI ATCGAT 1 cut(s) 366
BsiEI CGRYCG 2 cut(s) 402, 807
BsiHKAI GWGCWC 1 cut(s) 1419
BsiSI CCGG 4 cut(s) 201, 1215, 1290, 1310
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 3 cut(s) 1120, 1316, 1330
BsmAI GTCTC 3 cut(s) 266, 1013, 1314
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 2 cut(s) 266, 1314
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 360, 1419
Bsp19I CCATGG 1 cut(s) 1378
BspACI CCGC 9 cut(s) 210, 213, 280, 283, 350, 793, 1253, 1392, 1426
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 9 cut(s) 346, 427, 499, 541, 568, 747, 757, 1075, 1443
BspDI ATCGAT 1 cut(s) 366
BspFNI CGCG 2 cut(s) 285, 428
BspLI GGNNCC 1 cut(s) 573
BspMAI CTGCAG 2 cut(s) 294, 1441
BspMI ACCTGC 2 cut(s) 297, 1189
BspPI GGATC 3 cut(s) 134, 424, 1353
BspT104I TTCGAA 1 cut(s) 503
BspTNI GGTCTC 2 cut(s) 266, 1314
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 456, 1324, 1378
BssT1I CCWWGG 2 cut(s) 1324, 1378
Bst4CI ACNGT 4 cut(s) 29, 385, 510, 515
Bst6I CTCTTC 3 cut(s) 971, 1011, 1098
BstAPI GCANNNNNTGC 1 cut(s) 564
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 537, 762, 795
BstDSI CCRYGG 1 cut(s) 1378
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 7 cut(s) 221, 466, 592, 820, 838, 1339, 1489
BstFNI CGCG 2 cut(s) 285, 428
BstMAI GTCTC 3 cut(s) 266, 1013, 1314
BstMCI CGRYCG 2 cut(s) 402, 807
BstMWI GCNNNNNNNGC 4 cut(s) 210, 434, 564, 1423
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 1214
BstSFI CTRYAG 2 cut(s) 290, 1437
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 2 cut(s) 285, 428
BstV1I GCAGC 6 cut(s) 898, 1064, 1122, 1267, 1365, 1451
BstX2I RGATCY 2 cut(s) 139, 1345
BstXI CCANNNNNNTGG 2 cut(s) 991, 1385
BstYI RGATCY 2 cut(s) 139, 1345
BstZI CGGCCG 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 576
BsuRI GGCC 1 cut(s) 401
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 1378
BtgZI GCGATG 1 cut(s) 394
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 7 cut(s) 221, 466, 592, 820, 838, 1339, 1489
BtsI GCAGTG 2 cut(s) 1012, 1263
BtsIMutI CAGTG 3 cut(s) 390, 1012, 1263
BveI ACCTGC 2 cut(s) 297, 1189
Cac8I GCNNGC 3 cut(s) 537, 762, 795
Cfr10I RCCGGY 1 cut(s) 200
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 2 cut(s) 434, 533
Csp6I GTAC 5 cut(s) 30, 511, 900, 1434, 1499
CviAII CATG 3 cut(s) 103, 1115, 1379
CviQI GTAC 5 cut(s) 30, 511, 900, 1434, 1499
EaeI YGGCCR 1 cut(s) 399
EagI CGGCCG 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 971, 1011, 1098
EarI CTCTTC 3 cut(s) 971, 1011, 1098
EciI GGCGGA 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 1417
EclXI CGGCCG 1 cut(s) 399
Eco130I CCWWGG 2 cut(s) 1324, 1378
Eco24I GRGCYC 1 cut(s) 1419
Eco31I GGTCTC 2 cut(s) 266, 1314
Eco52I CGGCCG 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 1417
Eco57I CTGAAG 3 cut(s) 924, 936, 1464
Eco81I CCTNAGG 1 cut(s) 576
Eco91I GGTNACC 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 1417
EcoO65I GGTNACC 1 cut(s) 548
EcoRI GAATTC 3 cut(s) 296, 499, 886
EcoT14I CCWWGG 2 cut(s) 1324, 1378
EcoT38I GRGCYC 1 cut(s) 1419
ErhI CCWWGG 2 cut(s) 1324, 1378
FaeI CATG 3 cut(s) 106, 1118, 1382
FaiI YATR 8 cut(s) 104, 148, 671, 741, 750, 1100, 1116, 1380
FaqI GGGAC 1 cut(s) 409
FatI CATG 3 cut(s) 102, 1114, 1378
FauI CCCGC 1 cut(s) 786
FbaI TGATCA 3 cut(s) 234, 709, 1138
FokI GGATG 7 cut(s) 228, 473, 599, 827, 845, 1346, 1496
FriOI GRGCYC 1 cut(s) 1419
FspBI CTAG 4 cut(s) 245, 555, 620, 1011
GsaI CCCAGC 1 cut(s) 1471
HaeIII GGCC 1 cut(s) 401
HapII CCGG 4 cut(s) 201, 1215, 1290, 1310
HgaI GACGC 2 cut(s) 434, 533
Hin1II CATG 3 cut(s) 106, 1118, 1382
HindIII AAGCTT 2 cut(s) 475, 718
HpaII CCGG 4 cut(s) 201, 1215, 1290, 1310
HphI GGTGA 3 cut(s) 277, 560, 644
Hpy188III TCNNGA 4 cut(s) 376, 620, 643, 713
Hpy99I CGWCG 3 cut(s) 134, 443, 446
HpyAV CCTTC 5 cut(s) 911, 1033, 1141, 1199, 1256
HpyCH4III ACNGT 4 cut(s) 29, 385, 510, 515
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 55, 292, 1198, 1439
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 434, 564, 1423
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 106, 1118, 1382
Ksp22I TGATCA 3 cut(s) 234, 709, 1138
LmnI GCTCC 4 cut(s) 571, 665, 1002, 1422
Lsp1109I GCAGC 6 cut(s) 898, 1064, 1122, 1267, 1365, 1451
LweI GCATC 1 cut(s) 451
MaeI CTAG 4 cut(s) 245, 555, 620, 1011
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 3 cut(s) 548, 632, 731
MflI RGATCY 2 cut(s) 139, 1345
MhlI GDGCHC 2 cut(s) 360, 1419
MlyI GAGTC 4 cut(s) 172, 269, 857, 1190
MmeI TCCRAC 3 cut(s) 59, 153, 949
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 3 cut(s) 789, 824, 1463
MslI CAYNNNNRTG 1 cut(s) 1383
MspA1I CMGCKG 2 cut(s) 210, 1442
MspI CCGG 4 cut(s) 201, 1215, 1290, 1310
MspR9I CCNGG 1 cut(s) 1216
MvnI CGCG 2 cut(s) 285, 428
MwoI GCNNNNNNNGC 4 cut(s) 210, 434, 564, 1423
NciI CCSGG 1 cut(s) 1216
NcoI CCATGG 1 cut(s) 1378
NlaIII CATG 3 cut(s) 106, 1118, 1382
NlaIV GGNNCC 1 cut(s) 573
NmeAIII GCCGAG 2 cut(s) 427, 1438
NmuCI GTSAC 2 cut(s) 548, 632
NspV TTCGAA 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 1214
PleI GAGTC 4 cut(s) 172, 268, 856, 1189
PpsI GAGTC 4 cut(s) 172, 268, 856, 1189
PsiI TTATAA 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 1419
PspEI GGTNACC 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 1467
PspN4I GGNNCC 1 cut(s) 573
PstI CTGCAG 2 cut(s) 294, 1441
PsuI RGATCY 2 cut(s) 139, 1345
PvuII CAGCTG 1 cut(s) 1442
RsaI GTAC 5 cut(s) 31, 512, 901, 1435, 1500
RsaNI GTAC 5 cut(s) 30, 511, 900, 1434, 1499
RseI CAYNNNNRTG 1 cut(s) 1383
SacI GAGCTC 1 cut(s) 1419
SaqAI TTAA 3 cut(s) 789, 824, 1463
SbfI CCTGCAGG 1 cut(s) 294
ScaI AGTACT 2 cut(s) 901, 1435
SchI GAGTC 4 cut(s) 172, 269, 857, 1190
ScrFI CCNGG 1 cut(s) 1216
SdaI CCTGCAGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 360, 1419
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 2 cut(s) 290, 1437
SfuI TTCGAA 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 1383
SmlI CTYRAG 2 cut(s) 949, 1128
SmoI CTYRAG 2 cut(s) 949, 1128
Sse8387I CCTGCAGG 1 cut(s) 294
SsiI CCGC 9 cut(s) 210, 213, 280, 283, 350, 793, 1253, 1392, 1426
SspMI CTAG 4 cut(s) 245, 555, 620, 1011
SstI GAGCTC 1 cut(s) 1419
StyD4I CCNGG 1 cut(s) 1214
StyI CCWWGG 2 cut(s) 1324, 1378
TaaI ACNGT 4 cut(s) 29, 385, 510, 515
TaiI ACGT 1 cut(s) 363
TaqI TCGA 8 cut(s) 5, 324, 366, 503, 642, 807, 878, 1034
TaqII GACCGA 1 cut(s) 793
TatI WGTACW 2 cut(s) 899, 1433
TauI GCSGC 4 cut(s) 213, 285, 1256, 1429
Tru1I TTAA 3 cut(s) 789, 824, 1463
Tru9I TTAA 3 cut(s) 789, 824, 1463
TscAI CASTG 3 cut(s) 390, 1012, 1263
TseFI GTSAC 2 cut(s) 548, 632
TseI GCWGC 6 cut(s) 911, 1052, 1110, 1280, 1353, 1439
Tsp45I GTSAC 2 cut(s) 548, 632
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 2 cut(s) 109, 678
TspRI CASTG 3 cut(s) 390, 1012, 1263
XapI RAATTY 5 cut(s) 106, 220, 296, 499, 886
XbaI TCTAGA 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 4 cut(s) 245, 555, 620, 1011
ZrmI AGTACT 2 cut(s) 901, 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.